DN617299

Overview
NameDN617299
Unique NameDN617299
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11071 contig Csv1_Contig11071:367..962. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617299 vs. ExPASy Swiss-Prot
Match: CAMT1_DICDI (Probable caffeoyl-CoA O-methyltransferase 1 OS=Dictyostelium discoideum GN=omt5 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.766e-17
Identity = 50/132 (37.88%), Postives = 77/132 (58.33%), Query Frame = -2
Query:  200 EHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKNNYINYHKRLIELVKVGGVIGYDNTLWGGSVVAQPDAELDEHILYLRDFVQELNKALAVDPRIEICQLSIADGVTLCRRI 595
            ++ +  L    KAGV HKI+ +  PA   L +LI D+    T+DFVF+DADK  Y  Y++  ++L++ GG+I  DN L  G  VA P+A ++ +++ +R     LN  +  D R+    L IADG+TL  +I
Sbjct:  104 DYTQHALKFWAKAGVDHKINLKIQPASKTLQELI-DQGEENTYDFVFIDADKTGYDTYYELSLKLIRKGGIIAIDNVLQHGR-VADPNANVEPNLVAIR----ALNDKILADKRVTKTMLPIADGITLVTKI 229          
BLAST of DN617299 vs. ExPASy Swiss-Prot
Match: CMTD1_HUMAN (Catechol-O-methyltransferase domain-containing protein 1 OS=Homo sapiens GN=COMTD1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.132e-15
Identity = 47/129 (36.43%), Postives = 72/129 (55.81%), Query Frame = -2
Query:  200 EKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKNNYINYHKRLIELVKVGGVIGYDNTLWGGSVVAQPDAELDEHILYLRDFVQELNKALAVDPRIEICQLSIADGVTLCRRI 586
            E G P+ ++A   HKID R  PAL  LD+L+   +  GTFD   VDADK N   Y++R ++L++ GG++     LW G V+  P  ++        + V+ LN+ +  D R+ I  L + DG+TL  +I
Sbjct:  141 ELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEA-GTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDV------AAECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI 262          
BLAST of DN617299 vs. ExPASy Swiss-Prot
Match: CMTD1_MOUSE (Catechol-O-methyltransferase domain-containing protein 1 OS=Mus musculus GN=Comtd1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.125e-12
Identity = 48/128 (37.50%), Postives = 71/128 (55.47%), Query Frame = -2
Query:  200 GLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKNNYINYHKRLIELVKVGGVIGYDNTLWGGSVV-AQPDAELDEHILYLRDFVQELNKALAVDPRIEICQLSIADGVTLCRRI 580
            G P+ ++A V  KID R  PAL  LD+L+   +  GTFD   VDADK N   Y++R ++L++ GGV+     LW G V+  QP  +  E        V+ LN+ +  D R+ I  L + DG++L  +I
Sbjct:  143 GRPMWKQAEVEQKIDLRLQPALQTLDELLAAGEA-GTFDIAVVDADKENCTAYYERCLQLLRPGGVLAVLRVLWRGEVLQPQPRNKTVE-------CVRNLNERILRDARVYISLLPLDDGLSLAFKI 262          
The following BLAST results are available for this feature:
BLAST of DN617299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
CAMT1_DICDI5.766e-1737.88Probable caffeoyl-CoA O-methyltransferase 1 OS=Dic... [more]
CMTD1_HUMAN4.132e-1536.43Catechol-O-methyltransferase domain-containing pro... [more]
CMTD1_MOUSE1.125e-1237.50Catechol-O-methyltransferase domain-containing pro... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01A10_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617299 ID=DN617299; Name=DN617299; organism=Citrus sinensis; type=EST; length=596bp
AATTTTATTTTATTAAGTGGCCTTGACAATAAAATATAACATTTATTTTT
TAAAAAGTTATTAACTTAAGAAAGACAATAATACATTTTTCCAAACACTC
ATAAGTCTAATTTATTTGTGGATTCTACGGTCATAACCACACATAGTTTA
AAAGTTACGACACAACCAGCCTCATGAGTGAAAATTGAGAGGATCAGCCA
ATGCGGCGACATAATGTAACCCCATCAGCAATGGAGAGCTGGCAAATCTC
AATCCTTGGATCAACGGCCAGGGCCTTGTTGAGTTCCTGCACAAAATCCC
TCAAGTATAAGATATGCTCATCCAGTTCGGCATCAGGTTGTGCCACCACG
GATCCACCCCACAAGGTGTTGTCGTAGCCAATCACTCCCCCAACCTTCAC
AAGCTCAATAAGCCTCTTGTGGTAATTAATGTAGTTATTCTTGTCAGCAT
CAACAAAGACGAAGTCGAATGTCCCATGATATTTTTCGTCTTGGATCAAT
TGATCAAGAAGAGGAAGAGCAGGGCCTTCTCTGAAGTCAATCTTGTGAGC
AACACCAGCTTTTTGAATTATAGGGAGACCCTTCTCGTAGTGTTCC
back to top