DN617290

Overview
NameDN617290
Unique NameDN617290
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7350 contig Csv1_Contig7350:71..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617290 vs. ExPASy Swiss-Prot
Match: BCP_SHIFL (Putative peroxiredoxin bcp OS=Shigella flexneri GN=bcp PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.442e-21
Identity = 49/99 (49.49%), Postives = 68/99 (68.69%), Query Frame = 2
Query:  242 GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV 538
            G   P F+L DQ+G  V+L+ F+G+ V+VYFYP   TPGCT QAC  RD+ ++ KKAG +V+GIS D       FA+K  L +TLLSDE ++V +++GV
Sbjct:    7 GDIAPKFSLPDQDGEQVNLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVDVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVCEQFGV 105          
BLAST of DN617290 vs. ExPASy Swiss-Prot
Match: BCP_ECOLI (Putative peroxiredoxin bcp OS=Escherichia coli (strain K12) GN=bcp PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.442e-21
Identity = 49/99 (49.49%), Postives = 68/99 (68.69%), Query Frame = 2
Query:  242 GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV 538
            G   P F+L DQ+G  V+L+ F+G+ V+VYFYP   TPGCT QAC  RD+ ++ KKAG +V+GIS D       FA+K  L +TLLSDE ++V +++GV
Sbjct:    7 GDIAPKFSLPDQDGEQVNLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVDVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVCEQFGV 105          
BLAST of DN617290 vs. ExPASy Swiss-Prot
Match: BCP_ECOL6 (Putative peroxiredoxin bcp OS=Escherichia coli O6 GN=bcp PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.442e-21
Identity = 49/99 (49.49%), Postives = 68/99 (68.69%), Query Frame = 2
Query:  242 GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV 538
            G   P F+L DQ+G  V+L+ F+G+ V+VYFYP   TPGCT QAC  RD+ ++ KKAG +V+GIS D       FA+K  L +TLLSDE ++V +++GV
Sbjct:    7 GDIAPKFSLPDQDGEQVNLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVDVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVCEQFGV 105          
BLAST of DN617290 vs. ExPASy Swiss-Prot
Match: BCP_ECO57 (Putative peroxiredoxin bcp OS=Escherichia coli O157:H7 GN=bcp PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.442e-21
Identity = 49/99 (49.49%), Postives = 68/99 (68.69%), Query Frame = 2
Query:  242 GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV 538
            G   P F+L DQ+G  V+L+ F+G+ V+VYFYP   TPGCT QAC  RD+ ++ KKAG +V+GIS D       FA+K  L +TLLSDE ++V +++GV
Sbjct:    7 GDIAPKFSLPDQDGEQVNLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVDVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVCEQFGV 105          
BLAST of DN617290 vs. ExPASy Swiss-Prot
Match: BCP_HAEIN (Putative peroxiredoxin bcp OS=Haemophilus influenzae GN=bcp PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.546e-18
Identity = 47/102 (46.08%), Postives = 64/102 (62.75%), Query Frame = 2
Query:  233 VSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV 538
            +S G   P+FTL +Q+ + VSLS F+GK V++YFYP   TPGCT QAC  RDS  +    G  V+GIS D       F +K  L +TLLSD  ++V +++GV
Sbjct:    4 LSVGNQAPAFTLLNQQEKFVSLSDFRGKKVLIYFYPKALTPGCTTQACGLRDSKSELDVLGLVVLGISPDAPKKLAQFIEKKELNFTLLSDPDHQVAEQFGV 105          
BLAST of DN617290 vs. ExPASy Swiss-Prot
Match: BCP_BUCAP (Putative peroxiredoxin bcp OS=Buchnera aphidicola subsp. Schizaphis graminum GN=bcp PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.342e-18
Identity = 47/99 (47.47%), Postives = 62/99 (62.63%), Query Frame = 2
Query:  242 GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGV 538
            G   P F L +   +++ LS F GK V+VYFYP   TPGCT QAC  RD+ E FK    EV+GIS D+++    F +K  L +TLLSD+ N V K++GV
Sbjct:    7 GDIAPKFILPNCIDKSIKLSDFLGKKVLVYFYPKAMTPGCTVQACNIRDNLELFKSKKVEVLGISPDNTNKLLTFVEKKMLNFTLLSDKQNIVSKKFGV 105          
BLAST of DN617290 vs. ExPASy Swiss-Prot
Match: PRX_SCHPO (Peroxiredoxin C1773.02c OS=Schizosaccharomyces pombe GN=SPBC1773.02c PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.815e-17
Identity = 45/116 (38.79%), Postives = 64/116 (55.17%), Query Frame = 2
Query:  218 SISAKVSKGQAPPSFTLKDQEGRNVSLSKFKG-KPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKVRKEWGVPADFFGSL 562
            S+ + +  G   P  TL D++G ++ L      K +V++ YP   TPGCTKQ C FRD+Y K + +  EV+G+S D S + KAF  K   PY LLSD   ++ K+ G      G L
Sbjct:   41 SVDSTIQVGDVIPDITLPDEDGTSIRLRDITANKGLVIFAYPKASTPGCTKQGCGFRDNYPKIQASDYEVLGLSFDTSKAQKAFKDKQNFPYHLLSDPKGELIKKLGAEKPGGGKL 156          
BLAST of DN617290 vs. ExPASy Swiss-Prot
Match: BCP_HELPJ (Putative peroxiredoxin bcp OS=Helicobacter pylori J99 GN=bcp PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.383e-16
Identity = 43/97 (44.33%), Postives = 57/97 (58.76%), Query Frame = 2
Query:  230 KVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNKV 520
            K+  GQ  P F LK+ +G  +SL     K VV+YFYP D TPGCT +A  F   + +F+K  A V+G+S D+S SH+ F  +  L   LL DE  KV
Sbjct:    3 KLEVGQLAPDFRLKNSDGVEISLKDLLHKKVVLYFYPKDNTPGCTLEAKDFSALFSEFEKKNAVVVGVSPDNSQSHQKFISQCSLNVILLCDEDKKV 99          
BLAST of DN617290 vs. ExPASy Swiss-Prot
Match: BCP_HELPY (Putative peroxiredoxin bcp OS=Helicobacter pylori GN=bcp PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.183e-15
Identity = 42/96 (43.75%), Postives = 56/96 (58.33%), Query Frame = 2
Query:  230 KVSKGQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSDEGNK 517
            K+  GQ  P F LK+ +G  +SL     K VV+YFYP D TPGCT +A  F   + +F+K  A V+GIS D++ SH+ F  +  L   LL DE  K
Sbjct:    3 KLEVGQLAPDFRLKNSDGVEISLKDLLHKKVVLYFYPKDNTPGCTLEAKDFSALFSEFEKKNAVVVGISPDNAQSHQKFISQCSLNVILLCDEDKK 98          
BLAST of DN617290 vs. ExPASy Swiss-Prot
Match: DOT5_YEAST (Peroxiredoxin DOT5 OS=Saccharomyces cerevisiae GN=DOT5 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.804e-14
Identity = 40/90 (44.44%), Postives = 54/90 (60.00%), Query Frame = 2
Query:  242 GQAPPSFTLKDQEGRNVSLSKF--KGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPYTLLSD 505
            G   P  +L +++  ++SL K     + VV + YP   TPGCT+QAC FRD+Y++ KK  A V G+S D  +S K F  K  LPY LLSD
Sbjct:   66 GDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGCTRQACGFRDNYQELKKYAA-VFGLSADSVTSQKKFQSKQNLPYHLLSD 154          
The following BLAST results are available for this feature:
BLAST of DN617290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
BCP_SHIFL1.442e-2149.49Putative peroxiredoxin bcp OS=Shigella flexneri GN... [more]
BCP_ECOLI1.442e-2149.49Putative peroxiredoxin bcp OS=Escherichia coli (st... [more]
BCP_ECOL61.442e-2149.49Putative peroxiredoxin bcp OS=Escherichia coli O6 ... [more]
BCP_ECO571.442e-2149.49Putative peroxiredoxin bcp OS=Escherichia coli O15... [more]
BCP_HAEIN2.546e-1846.08Putative peroxiredoxin bcp OS=Haemophilus influenz... [more]
BCP_BUCAP4.342e-1847.47Putative peroxiredoxin bcp OS=Buchnera aphidicola ... [more]
PRX_SCHPO2.815e-1738.79Peroxiredoxin C1773.02c OS=Schizosaccharomyces pom... [more]
BCP_HELPJ2.383e-1644.33Putative peroxiredoxin bcp OS=Helicobacter pylori ... [more]
BCP_HELPY1.183e-1543.75Putative peroxiredoxin bcp OS=Helicobacter pylori ... [more]
DOT5_YEAST3.804e-1444.44Peroxiredoxin DOT5 OS=Saccharomyces cerevisiae GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A05_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617290 ID=DN617290; Name=DN617290; organism=Citrus sinensis; type=EST; length=624bp
TCATCAAGGAGCCTTATCTCTTCCACTCAAATGGGCTGCTTCACTGAATC
TCCCAAAGCACACTCTCCCACCTTTTCTCCCCACTCAAACTCCCAGAACC
CCACCTTCCCAAAGCCTCGCAATTCCCTCCAAATCATCATCACAGTCTCA
ATTTTATGGCCTCGGGTTCTCTTTTTCTTCCAACTTGCCAATCCCATCTT
CCACATCTTTCAAGACTTCCATTTCTGCCAAGGTGAGCAAAGGACAGGCG
CCTCCTTCCTTCACATTGAAAGATCAAGAGGGCAGGAATGTGAGCCTATC
CAAGTTTAAAGGGAAGCCCGTGGTTGTTTATTTTTACCCTGCTGATGAGA
CACCTGGCTGCACCAAACAGGCATGCGCTTTTAGGGATTCTTATGAGAAA
TTTAAGAAAGCAGGAGCTGAGGTTATTGGGATTAGTGGTGATGATTCATC
GTCACACAAGGCATTTGCAAAAAAGTATAGGCTTCCATATACATTGCTGA
GCGACGAGGGTAACAAGGTGAGGAAAGAATGGGGGGTTCCAGCAGACTTC
TTTGGATCATTGCCTGGGAGACAGACTTACGTTCTTGACAAGAATGAAGT
GGTTCAGCTCATCTACAACAACCA
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