DN617287

Overview
NameDN617287
Unique NameDN617287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4014 contig Csv1_Contig4014:187..906. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_HELPY (Thioredoxin reductase OS=Helicobacter pylori GN=trxB PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.698e-30
Identity = 76/199 (38.19%), Postives = 108/199 (54.27%), Query Frame = 3
Query:  123 IIGSGPXXXXXXXXXXXXELK-PILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVI 713
            IIG GP             +K  +LFE  M     PGGQ+T +S++EN+PG  + + G D M   + Q  RFG +     V +V  K   F +   D K+  A +VI+ATG   K+    G   +W +G+S CA CDG    +++K +AV+GGGD+A+EEA +L     KVY+IHRRD FR + I    A  N KI+ +
Sbjct:    6 IIGGGPAGLSAGLYATRGGVKNAVLFEKGM-----PGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEMTAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGF--FYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRCAPITLEHAKNNDKIEFL 197          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_HELPJ (Thioredoxin reductase OS=Helicobacter pylori J99 GN=trxB PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.218e-30
Identity = 75/199 (37.69%), Postives = 108/199 (54.27%), Query Frame = 3
Query:  123 IIGSGPXXXXXXXXXXXXELK-PILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVI 713
            IIG GP             +K  +LFE  M     PGGQ+T +S++EN+PG  + + G D M   + Q  RFG +     + +V  K   F +   D K+  A +VI+ATG   K+    G   +W +G+S CA CDG    +++K +AV+GGGD+A+EEA +L     KVY+IHRRD FR + I    A  N KI+ +
Sbjct:    6 IIGGGPAGLSAGLYATRGGVKNAVLFEKGM-----PGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEMTAIQRVSKKGSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGF--FYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRCAPITLEHAKNNSKIEFL 197          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_TREPA (Thioredoxin reductase OS=Treponema pallidum GN=trxB PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.896e-30
Identity = 74/201 (36.82%), Postives = 109/201 (54.23%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            V I+G+G              L+ ++ E       A GGQ      +EN+PG+   I G +  +  + Q++ FG QI  E V+ +  +   F + T + +  A +VI+ATGA  +K+  PG   F  RG+S CA CDG  P FR+K + VIGGGD+A +E+  L++   +V +IHRRD+ RA K +  R L NP I V WN
Sbjct:    7 VIIVGAGAAGLSAAQYACRANLRTLVIESK-----AHGGQALLIDSLENYPGYATPISGFEYAENMKKQAVAFGAQIAYEEVTTIGKRDSVFHITTGTGAYTAMSVILATGAEHRKMGIPGESEFLGRGVSYCATCDG--PFFRNKHVVVIGGGDAACDESLVLSRLTDRVTMIHRRDTLRAQKAIAERTLKNPHIAVQWN 200          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_CLOLI (Thioredoxin reductase OS=Clostridium litorale GN=trxB PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.453e-30
Identity = 79/202 (39.11%), Postives = 105/202 (51.98%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            + IIGSGP            ++K +L EG        GGQ+  T +V N+PG      G  L+ R   Q   FG +   + +  VDF  +  KV   +K    A  VIVATGA  K    PG      +G+S CA CD  A  F D  + VIGGGD+A+EEA FLTK+  KV I+HRR   RA+K +Q +A  N K++ +WN
Sbjct:    7 IAIIGSGPAGLAAALYGARAKMKTLLLEGMKV-----GGQIVITHEVANYPGSVPEATGPSLIGRMEEQVEEFGAERVMDNIVDVDFTDK-IKVLKGAKGEYKAKAVIVATGASPKLAGCPGEKELTGKGVSYCATCD--ADFFEDMEVFVIGGGDTAVEEAMFLTKFARKVTIVHRRAELRAAKSIQEKAFKNEKLNFMWN 200          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_MYCPN (Thioredoxin reductase OS=Mycoplasma pneumoniae GN=trxB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.805e-25
Identity = 68/197 (34.52%), Postives = 107/197 (54.31%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKI 704
            V I+G+GP             L   + EG       PGG++  T+ VEN+PG+ + I G DL     N  +      F   + K+D  +  F ++ D K+V+ A TVI ATG + +KL     D F+ +GIS CA+CDG+  +++D+ + V+GGG+SA++EA +L      V++IHRR+ FRA +   N+    P +
Sbjct:   18 VAIVGAGPAGIAAGIYGKRANLNLAIIEG-----STPGGKVVKTNIVENYPGY-KSITGPDLGLEMYNHLIDLEPTFFYANLIKLDKAADTFILYLDDKTVVFAKTVIYATGMLERKLGVAKEDHFYGKGISYCAICDGS--LYKDQVVGVVGGGNSAIQEALYLASMAKTVHLIHRREGFRADETALNKLRNLPNV 206          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_MYCGE (Thioredoxin reductase OS=Mycoplasma genitalium GN=trxB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.910e-24
Identity = 65/185 (35.14%), Postives = 103/185 (55.68%), Query Frame = 3
Query:  123 IIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKS-VLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIM 674
            I+G+GP             L   + EG       PGG++  T+ VEN+PGF + I G +L     N  L F   +F   + K+D  +  F ++ D+K+ V + TVI ATG   +KL     D F+ +GIS CA+CD A  +++ K + V+GGG+SA++EA +L+     V++IHRR+ FR+  ++
Sbjct:   20 IVGAGPAGIASAIYGKRANLNLAIIEG-----NTPGGKIVKTNIVENYPGF-KTITGPELGLEMYNHLLAFEPVVFYNNLIKIDHLNDTFILYLDNKTTVFSKTVIYATGMEERKLGIEKEDYFYGKGISYCAICDAA--LYKGKTVGVVGGGNSAIQEAIYLSSIAKTVHLIHRREVFRSDALL 196          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_UREPA (Thioredoxin reductase OS=Ureaplasma parvum GN=trxB PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 64/199 (32.16%), Postives = 104/199 (52.26%), Query Frame = 3
Query:  123 IIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            IIG+GP             L  I+ E        PGG++  TS+VEN+ G    I G +L  +   Q L     I  E   ++  K +  K+   +++++  TVI+ATG   ++L   G   F N+GIS CA+CDG  P++++K ++VIG G+SA+EEA +L     +V++I  +  F+A + +   A   P I + +N
Sbjct:   10 IIGAGPAGLAAAVYAKRSGLNVIIVEKQF-----PGGKIALTSNVENYLGI-NSIPGPELAYKMYEQVLNLNVSIIYEAADEISLKEKYKKIKLTTQTLITKTVIIATGTENRRLNILGELEFENKGISYCAICDG--PLYKNKAVSVIGSGNSAVEEAIYLATIAKEVHLIANKPQFKAEQQLVQIANNTPNIKIYYN 200          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_MYCPU (Thioredoxin reductase OS=Mycoplasma pulmonis GN=trxB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.223e-22
Identity = 70/204 (34.31%), Postives = 106/204 (51.96%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI-FTETVSKVDFKSRPFK-VFTDSKSVLADTVIVATGAVAKK-LQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            V IIG+GP             L  +  +     + APGG+L   S +EN+PG    + G DL  R    +  FG +  + + V  ++ K    + V  D K + A +VI+A+G V++K  +    D F NRG+S C +CDG  P++   P  +IGGG+SA+EE  FL+   SKVY+I R   F A K + N   +   I+V++N
Sbjct:    9 VAIIGAGPGALTAAIYTSRGNLDTVFID-----NAAPGGKLIYASKIENWPG-DTIVKGTDLAIRFFEHAQAFGAKYEYGKVVDLINIKDDLKELVLEDGKKIQAKSVIIASGMVSRKPREILNYDEFENRGVSYCVICDG--PMYGHNPAIIIGGGNSAVEEGTFLSSIASKVYVIVRDSDFIAEKALVNDLKSRKNIEVLFN 204          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_AQUAE (Thioredoxin reductase OS=Aquifex aeolicus GN=trxB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.903e-22
Identity = 62/175 (35.43%), Postives = 92/175 (52.57%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYII 638
            V IIG+GP              K ++     A+     G L  T  +EN+PG P  + G +L+   R Q+  FG +     V   D  S P KV+T D +     T+IVA+GA+ +  +F G + F  RG+S C VCD A   F+D+P+AVIG  D A+EEA F+ ++ +KV+ +
Sbjct:   15 VIIIGAGPAGTTAAIYTARAGWKTLVLYRAEAD-----GALGVTQKIENYPGVPGPLSGYELLKIMREQAKSFGAEFVRGKVIATDLNSDPKKVYTIDGREFRGKTIIVASGAMERANKFKGEEEFLGRGVSYCGVCDAA--FFKDQPVAVIGDDDYAIEEAEFIARFANKVFFV 182          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: R34K_CLOPA (34.2 kDa protein in rubredoxin operon OS=Clostridium pasteurianum PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 63/200 (31.50%), Postives = 98/200 (49.00%), Query Frame = 3
Query:  123 IIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFT-ETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            IIG+GP            +L  ++ E  +      GGQ+  T  VENFPGF   I G DL D+    +   G  I     + K+        + T+        +I+ATGA +++L  P  +    + I  C +CDGA  +++ K L V+GGG+SA+E A FLTKY   + I+H+ D  +A K  Q+    +  + +IW+
Sbjct:   11 IIGAGPAGLTAAIYAIRAKLNTLVLENELV-----GGQIRETYTVENFPGF-NVISGADLADKMEEHAASIGVNIDQFSNIEKIKLSDDEKIIETEDVIYKVKALIIATGAKSRRLPIPEEEKLHGKVIHYCELCDGA--LYQGKDLVVVGGGNSAVEAAIFLTKYARNITIVHQFDYLQAQKYSQDELFKHKNVKIIWD 202          
The following BLAST results are available for this feature:
BLAST of DN617287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
TRXB_HELPY1.698e-3038.19Thioredoxin reductase OS=Helicobacter pylori GN=tr... [more]
TRXB_HELPJ2.218e-3037.69Thioredoxin reductase OS=Helicobacter pylori J99 G... [more]
TRXB_TREPA2.896e-3036.82Thioredoxin reductase OS=Treponema pallidum GN=trx... [more]
TRXB_CLOLI6.453e-3039.11Thioredoxin reductase OS=Clostridium litorale GN=t... [more]
TRXB_MYCPN2.805e-2534.52Thioredoxin reductase OS=Mycoplasma pneumoniae GN=... [more]
TRXB_MYCGE6.910e-2435.14Thioredoxin reductase OS=Mycoplasma genitalium GN=... [more]
TRXB_UREPA9.978e-2332.16Thioredoxin reductase OS=Ureaplasma parvum GN=trxB... [more]
TRXB_MYCPU2.223e-2234.31Thioredoxin reductase OS=Mycoplasma pulmonis GN=tr... [more]
TRXB_AQUAE2.903e-2235.43Thioredoxin reductase OS=Aquifex aeolicus GN=trxB ... [more]
R34K_CLOPA4.952e-2231.5034.2 kDa protein in rubredoxin operon OS=Clostridi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617287 ID=DN617287; Name=DN617287; organism=Citrus sinensis; type=EST; length=720bp
GAACCTTTTTTGGAATTGTAACTACTTCCTCCGCCGCGGCCGCCGCTTCT
TTTTCCGCAACCACCGCTCCCAAGATCAGCAACGCCATGGACGAAATACA
AACCCTCAAGACCAAAGTCTGCATCATTGGCAGCGGCCCCGCCGCCCACA
CTGCCGCCATCTATGCCGCCCGAGCCGAGCTCAAACCCATTCTCTTCGAG
GGCTGGATGGCCAATGATATTGCGCCTGGTGGCCAACTCACCACCACCTC
CGACGTCGAGAATTTCCCCGGTTTTCCCCAGGGCATTCTCGGGGGCGACT
TGATGGATCGCTGCCGCAACCAGTCTCTCCGTTTCGGCACCCAGATTTTT
ACCGAGACCGTTTCCAAAGTCGACTTCAAATCCCGCCCTTTTAAAGTTTT
TACAGATTCCAAATCCGTTCTTGCTGATACTGTTATTGTCGCCACCGGCG
CCGTTGCCAAAAAGTTGCAATTCCCCGGTTCAGATGCGTTCTGGAACCGT
GGCATATCGGCCTGCGCAGTGTGTGATGGAGCCGCTCCGATATTTCGGGA
CAAACCCTTGGCCGTGATTGGTGGCGGGGATTCAGCCATGGAAGAAGCCA
ACTTTTTGACAAAGTACGGATCAAAAGTTTATATAATTCATAGGAGGGAT
AGTTTTAGAGCTTCGAAGATTATGCAAAACAGGGCACTTACGAACCCTAA
GATTGATGTGATTTGGAATT
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