DN617287

Overview
NameDN617287
Unique NameDN617287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4014 contig Csv1_Contig4014:187..906. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: DHNA_BACSU (NADH dehydrogenase OS=Bacillus subtilis GN=ahpF PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.597e-12
Identity = 49/165 (29.70%), Postives = 82/165 (49.70%), Query Frame = 3
Query:  228 GGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            GGQ+  T  +ENF    +   G  L          +   +     +K   K   F++  ++ +VL + TVI++TGA  + +  PG   F N+G++ C  CDG  P+F  K +AVIGGG+S +E A  L    + V ++      +A +++Q R  + P + V+ N
Sbjct:  242 GGQVLDTMSIENFISV-KATEGPKLAASLEEHVKEYDIDVMNLQRAKRLEKKDLFELELENGAVLKSKTVILSTGARWRNVNVPGEQEFKNKGVAYCPHCDG--PLFEGKDVAVIGGGNSGIEAAIDLAGIVNHVTVLEFAPELKADEVLQKRLYSLPNVTVVKN 403          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: AHPF_ECOLI (Alkyl hydroperoxide reductase subunit F OS=Escherichia coli (strain K12) GN=ahpF PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.597e-12
Identity = 58/206 (28.16%), Postives = 100/206 (48.54%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIF-TETVSKV---DFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            V I+GSGP             ++     G M      GGQ+  T D+EN+   P+   G  L    +     +   +  +++ SK+     +    ++ T S +VL A ++IVATGA  + +  PG D +  +G++ C  CDG  P+F+ K +AVIGGG+S +E A  L      V ++      +A +++Q++  +   +D+I N
Sbjct:  215 VLIVGSGPAGAAAAIYSARKGIRT----GLMGERF--GGQILDTVDIENYISVPK-TEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCDG--PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKNVDIILN 411          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: AHPF_SALTY (Alkyl hydroperoxide reductase subunit F OS=Salmonella typhimurium GN=ahpF PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.085e-12
Identity = 57/206 (27.67%), Postives = 100/206 (48.54%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIF-TETVSKV---DFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            V I+GSGP             ++     G M      GGQ+  T D+EN+   P+   G  L    +     +   +  +++ SK+     +    ++ T S +VL A ++I+ATGA  + +  PG D +  +G++ C  CDG  P+F+ K +AVIGGG+S +E A  L      V ++      +A +++Q++  +   +D+I N
Sbjct:  215 VLIVGSGPAGAAAAVYSARKGIRT----GLMGERF--GGQVLDTVDIENYISVPK-TEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDG--PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKVRSLKNVDIILN 411          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: AHPF_XANCH (Alkyl hydroperoxide reductase subunit F OS=Xanthomonas campestris pv. phaseoli GN=ahpF PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.068e-12
Identity = 52/166 (31.33%), Postives = 83/166 (50.00%), Query Frame = 3
Query:  228 GGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLR-FGTQIFT----ETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQN--RALTNPKI 704
            GGQ+  T  +ENF   P+    G  M     Q +R +   I      E +              +  S+ + TVI++TGA  +++  PG D + N+G++ C  CDG  P+F+ K +AVIGGG+S +E A  L    + V ++   D  RA +++Q   R+L N +I
Sbjct:  246 GGQVLDTMSIENFISVPE--TEGPKMAAALEQHVRQYDVDIMNLQRAEQLIPAGADGLIEIKLANGASLKSKTVILSTGARWRQMNVPGEDQYKNKGVAYCPHCDG--PLFKGKRVAVIGGGNSGVEAAIDLAGIVAHVTLVEFDDKLRADEVLQRKLRSLHNVRI 407          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: AHPF_PSEPU (Alkyl hydroperoxide reductase subunit F OS=Pseudomonas putida GN=ahpF PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.352e-11
Identity = 38/100 (38.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:  414 SVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVI 713
            S+ A TVI+ATGA  +++  PG   +  RG++ C  CDG  P+F+ K +AVIGGG+S +E A  L    ++V +I      RA  ++Q +  + P ++VI
Sbjct:  310 SLKAKTVILATGARWREMNVPGEQEYRGRGVAYCPHCDG--PLFKGKRVAVIGGGNSGVEAAIDLAGIVAQVTLIEFDSQLRADAVLQRKLRSLPNVNVI 407          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: AHPF_PSEPK (Alkyl hydroperoxide reductase subunit F OS=Pseudomonas putida (strain KT2440) GN=ahpF PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.352e-11
Identity = 38/100 (38.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:  414 SVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVI 713
            S+ A TVI+ATGA  +++  PG   +  RG++ C  CDG  P+F+ K +AVIGGG+S +E A  L    ++V +I      RA  ++Q +  + P ++VI
Sbjct:  310 SLKAKTVILATGARWREMNVPGEQEYRGRGVAYCPHCDG--PLFKGKRVAVIGGGNSGVEAAIDLAGIVAQVTLIEFDSQLRADAVLQRKLRSLPNVNVI 407          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: FENR1_GRAFK (Ferredoxin--NADP reductase 1 OS=Gramella forsetii (strain KT0803) GN=GFO_0125 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 59/198 (29.80%), Postives = 91/198 (45.96%), Query Frame = 3
Query:  105 LKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTT---SDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIF----TETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVA----KKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRAS 665
            +KT + IIG+GP            +LK  L +        PGGQ +       + + PGFP+ +L GDL+D    Q   F          ET+ K +  S  F V T   +     V+V  G +     +K   P    + N+G+ A  + D    ++RDK + + GGGDSA++ + FL    S+V ++HRR  FR +
Sbjct:    2 IKTDILIIGAGPTGLFAVFEAGLLKLKCHLIDALPQ----PGGQCSEIYPKKPIYDIPGFPE-VLAGDLVDNLMEQIKPFEPGFTLGERAETIDKQEDGS--FIVTTSQGAKHHAPVVVIAGGLGSFEPRKPPIPSIKEYENKGV-AYIIRD--PEVYRDKKVVIAGGGDSALDWSIFLADVASEVSLVHRRKDFRGA 189          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: DHNA_BACYN (NADH dehydrogenase OS=Bacillus sp. (strain YN-1) GN=ahpF PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 49/168 (29.17%), Postives = 85/168 (50.60%), Query Frame = 3
Query:  228 GGQLTTTSDVENFPG--FPQGI-LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            GGQ+  T  +ENF    + +G  L   L +  +   +        + + K D      ++  ++ +VL + +VI++TGA  + +  PG   F N+G++ C  CDG  P+F  K +AVIGGG+S +E A  L    + V ++      +A +++Q R  + P + VI N
Sbjct:  242 GGQIMDTLSIENFISQKYTEGPKLAASLEEHVKEYDIDVMKLQRAKRLEKKDL----IEIELENGAVLKSKSVILSTGARWRNVGVPGEQEFKNKGVAYCPHCDG--PLFEGKDVAVIGGGNSGVEAAIDLAGIVNHVTVLEFMPELKADEVLQERLNSLPNVTVIKN 403          
The following BLAST results are available for this feature:
BLAST of DN617287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
DHNA_BACSU1.597e-1229.70NADH dehydrogenase OS=Bacillus subtilis GN=ahpF PE... [more]
AHPF_ECOLI1.597e-1228.16Alkyl hydroperoxide reductase subunit F OS=Escheri... [more]
AHPF_SALTY2.085e-1227.67Alkyl hydroperoxide reductase subunit F OS=Salmone... [more]
AHPF_XANCH6.068e-1231.33Alkyl hydroperoxide reductase subunit F OS=Xanthom... [more]
AHPF_PSEPU1.352e-1138.00Alkyl hydroperoxide reductase subunit F OS=Pseudom... [more]
AHPF_PSEPK1.352e-1138.00Alkyl hydroperoxide reductase subunit F OS=Pseudom... [more]
FENR1_GRAFK3.011e-1129.80Ferredoxin--NADP reductase 1 OS=Gramella forsetii ... [more]
DHNA_BACYN6.708e-1129.17NADH dehydrogenase OS=Bacillus sp. (strain YN-1) G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01A03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617287 ID=DN617287; Name=DN617287; organism=Citrus sinensis; type=EST; length=720bp
GAACCTTTTTTGGAATTGTAACTACTTCCTCCGCCGCGGCCGCCGCTTCT
TTTTCCGCAACCACCGCTCCCAAGATCAGCAACGCCATGGACGAAATACA
AACCCTCAAGACCAAAGTCTGCATCATTGGCAGCGGCCCCGCCGCCCACA
CTGCCGCCATCTATGCCGCCCGAGCCGAGCTCAAACCCATTCTCTTCGAG
GGCTGGATGGCCAATGATATTGCGCCTGGTGGCCAACTCACCACCACCTC
CGACGTCGAGAATTTCCCCGGTTTTCCCCAGGGCATTCTCGGGGGCGACT
TGATGGATCGCTGCCGCAACCAGTCTCTCCGTTTCGGCACCCAGATTTTT
ACCGAGACCGTTTCCAAAGTCGACTTCAAATCCCGCCCTTTTAAAGTTTT
TACAGATTCCAAATCCGTTCTTGCTGATACTGTTATTGTCGCCACCGGCG
CCGTTGCCAAAAAGTTGCAATTCCCCGGTTCAGATGCGTTCTGGAACCGT
GGCATATCGGCCTGCGCAGTGTGTGATGGAGCCGCTCCGATATTTCGGGA
CAAACCCTTGGCCGTGATTGGTGGCGGGGATTCAGCCATGGAAGAAGCCA
ACTTTTTGACAAAGTACGGATCAAAAGTTTATATAATTCATAGGAGGGAT
AGTTTTAGAGCTTCGAAGATTATGCAAAACAGGGCACTTACGAACCCTAA
GATTGATGTGATTTGGAATT
back to top