DN617286

Overview
NameDN617286
Unique NameDN617286
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length496
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4014 contig Csv1_Contig4014:1028..1523. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617286 vs. ExPASy Swiss-Prot
Match: TRXB_DEBHA (Thioredoxin reductase OS=Debaryomyces hansenii GN=TRR1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.827e-20
Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = -2
Query:  292 HEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE 495
            H PAT+    QL+     YI+TKPGT  TS+PGVFAAGDVQDK+YRQA+T+AGTGCMAAL+ E +L E
Sbjct:  250 HIPATQIFAKQLETDDQNYILTKPGTAETSIPGVFAAGDVQDKRYRQAITSAGTGCMAALDCEKFLSE 317          
BLAST of DN617286 vs. ExPASy Swiss-Prot
Match: TRXB_RICCN (Thioredoxin reductase OS=Rickettsia conorii GN=trxB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.234e-20
Identity = 48/68 (70.59%), Postives = 52/68 (76.47%), Query Frame = -2
Query:  292 HEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE 495
            H P T    GQ+ +  D YIITK GTT TSV GVFAAGDVQDK YRQAVTAAGTGCMAALEAE +L +
Sbjct:  243 HAPNTGLFTGQIVMDDDNYIITKSGTTRTSVEGVFAAGDVQDKIYRQAVTAAGTGCMAALEAEKFLNK 310          
BLAST of DN617286 vs. ExPASy Swiss-Prot
Match: TRXB_YARLI (Thioredoxin reductase OS=Yarrowia lipolytica GN=TRR1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.405e-19
Identity = 43/68 (63.24%), Postives = 54/68 (79.41%), Query Frame = -2
Query:  292 HEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE 495
            H PAT  + GQ++   +GY++T PGT +TSV GVFAAGDVQDK+YRQA+T+AGTGCMAAL+ E  L E
Sbjct:  250 HIPATSIVKGQVETDEEGYVVTVPGTANTSVKGVFAAGDVQDKRYRQAITSAGTGCMAALDCEKLLAE 317          
BLAST of DN617286 vs. ExPASy Swiss-Prot
Match: TRXB1_YEAST (Thioredoxin reductase 1 OS=Saccharomyces cerevisiae GN=TRR1 PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 1.405e-19
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = -2
Query:  289 HEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEI 495
            H PATK + GQ+D    GYI T PG++ TSVPG FAAGDVQD KYRQA+T+AG+GCMAAL+AE YL  +
Sbjct:  250 HTPATKIVAGQVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKYRQAITSAGSGCMAALDAEKYLTSL 318          
BLAST of DN617286 vs. ExPASy Swiss-Prot
Match: TRXB_DICDI (Thioredoxin reductase OS=Dictyostelium discoideum GN=trrA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.337e-19
Identity = 43/69 (62.32%), Postives = 53/69 (76.81%), Query Frame = -2
Query:  289 HEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEI 495
            H P + FL+GQL+    GYIIT+PG+T T+V GVFA GDVQDK YRQA+TAAG GCMAAL+ E +L  +
Sbjct:  251 HTPNSAFLNGQLNTDETGYIITQPGSTKTNVEGVFACGDVQDKVYRQAITAAGNGCMAALDCERFLSSL 319          
BLAST of DN617286 vs. ExPASy Swiss-Prot
Match: TRXB_RICFE (Thioredoxin reductase OS=Rickettsia felis GN=trxB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.971e-19
Identity = 46/68 (67.65%), Postives = 51/68 (75.00%), Query Frame = -2
Query:  292 HEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE 495
            H P T    GQ+ +  D YIITK GTT TSV GVFAAGDVQDK YRQAVTAAG+GCMAALE E +L +
Sbjct:  243 HAPNTGLFTGQIAMDDDNYIITKSGTTKTSVEGVFAAGDVQDKIYRQAVTAAGSGCMAALEVEKFLNK 310          
BLAST of DN617286 vs. ExPASy Swiss-Prot
Match: TRXB_RICBR (Thioredoxin reductase OS=Rickettsia bellii (strain RML369-C) GN=trxB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.028e-18
Identity = 43/68 (63.24%), Postives = 53/68 (77.94%), Query Frame = -2
Query:  292 HEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE 495
            H+P T     Q+ + +D YIIT PG+T T++ GVFAAGDVQDK YRQA+TAAGTGCMAALEAE +L +
Sbjct:  243 HKPNTALFAEQVTMDNDNYIITTPGSTKTNIEGVFAAGDVQDKIYRQAITAAGTGCMAALEAEKFLNK 310          
BLAST of DN617286 vs. ExPASy Swiss-Prot
Match: TRXB2_YEAST (Thioredoxin reductase 2, mitochondrial OS=Saccharomyces cerevisiae GN=TRR2 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.028e-18
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = -2
Query:  298 HEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYL 495
            H PAT  + GQ+D    GYI T PG++ TSVPG FAAGDVQD +YRQAVT+AG+GC+AAL+AE YL
Sbjct:  273 HSPATDIVKGQVDEEETGYIKTVPGSSLTSVPGFFAAGDVQDSRYRQAVTSAGSGCIAALDAERYL 338          
BLAST of DN617286 vs. ExPASy Swiss-Prot
Match: TRXB_PNECA (Thioredoxin reductase OS=Pneumocystis carinii GN=TRR1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.707e-18
Identity = 43/68 (63.24%), Postives = 51/68 (75.00%), Query Frame = -2
Query:  292 HEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE 495
            HEPAT  + GQ++   DGYIITK G   T++ G FAAGDVQDKK+RQAVT+AG+GCMA L AE  L E
Sbjct:  248 HEPATTLVRGQVECDKDGYIITKNGGPETNIKGFFAAGDVQDKKWRQAVTSAGSGCMAGLAAERLLAE 315          
BLAST of DN617286 vs. ExPASy Swiss-Prot
Match: TRXB_SCHPO (Thioredoxin reductase OS=Schizosaccharomyces pombe GN=trr1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.929e-17
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = -2
Query:  289 HEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEI 495
            H PATK +  Q++L   GYI T  GT  TS+PG FAAGDVQDK +RQA+T+AG+GC AAL A HYL+E+
Sbjct:  250 HIPATKLVAEQIELDEAGYIKTINGTPRTSIPGFFAAGDVQDKVFRQAITSAGSGCQAALLAMHYLEEL 318          
The following BLAST results are available for this feature:
BLAST of DN617286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
TRXB_DEBHA4.827e-2064.71Thioredoxin reductase OS=Debaryomyces hansenii GN=... [more]
TRXB_RICCN8.234e-2070.59Thioredoxin reductase OS=Rickettsia conorii GN=trx... [more]
TRXB_YARLI1.405e-1963.24Thioredoxin reductase OS=Yarrowia lipolytica GN=TR... [more]
TRXB1_YEAST1.405e-1965.22Thioredoxin reductase 1 OS=Saccharomyces cerevisia... [more]
TRXB_DICDI5.337e-1962.32Thioredoxin reductase OS=Dictyostelium discoideum ... [more]
TRXB_RICFE6.971e-1967.65Thioredoxin reductase OS=Rickettsia felis GN=trxB ... [more]
TRXB_RICBR2.028e-1863.24Thioredoxin reductase OS=Rickettsia bellii (strain... [more]
TRXB2_YEAST2.028e-1865.15Thioredoxin reductase 2, mitochondrial OS=Saccharo... [more]
TRXB_PNECA7.707e-1863.24Thioredoxin reductase OS=Pneumocystis carinii GN=T... [more]
TRXB_SCHPO2.929e-1760.87Thioredoxin reductase OS=Schizosaccharomyces pombe... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617286 ID=DN617286; Name=DN617286; organism=Citrus sinensis; type=EST; length=496bp
TAATATATGTCTTAAAAAATTCCATCCAACAATTACATTCTAAAATGCAG
CACTAATACCAACTTAAAACAAATTCCTTATCCAATTAGTTTTTCCAACC
AACTATTGGAAGCCAATAAATAAATCACTAAGACAGTACTGATTCATCAC
TTGAATTGGTCGAGAAAAAGCCTTCTTCATTCAGAGGTAGATTTAGATCA
AGTTTGCATGTAGACTATTCTGCTTTCATCATATCCCAGCCCTGCCATTA
TCCTACAGTGAAGATTCACTCTTATCCTCCTGAGATCCTATCTCTTGCAA
GTAATGCTCAGCTTCCAAGGCTGCCATGCACCCAGTGCCGGCGGCGGTAA
CAGCCTGCCTGTACTTCTTATCCTGAACATCTCCAGCAGCAAACACTCCA
GGGACACTAGTGTGTGTAGTCCCAGGTTTGGTAATAATATAACCATCAGA
ATGCAGGTCCAACTGACCATCCAAAAACTTAGTAGCAGGCTCGTGT
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