DN617286

Overview
NameDN617286
Unique NameDN617286
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length496
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4014 contig Csv1_Contig4014:1028..1523. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617286 vs. ExPASy Swiss-Prot
Match: TRXB_PNEJI (Thioredoxin reductase OS=Pneumocystis jiroveci GN=TRR1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.929e-17
Identity = 42/68 (61.76%), Postives = 51/68 (75.00%), Query Frame = -2
Query:  292 HEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE 495
            HEPAT  + GQ++   +GYIITK G   T++ G FAAGDVQDKK+RQAVT+AG+GCMA L AE  L E
Sbjct:  248 HEPATALVRGQVECDDNGYIITKNGGPETNIKGFFAAGDVQDKKWRQAVTSAGSGCMAGLAAERLLAE 315          
BLAST of DN617286 vs. ExPASy Swiss-Prot
Match: TRXB_STRCL (Thioredoxin reductase OS=Streptomyces clavuligerus GN=trxB PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 6.524e-17
Identity = 41/77 (53.25%), Postives = 52/77 (67.53%), Query Frame = -2
Query:  265 HEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSQEDKSE 495
            H+P T+   GQLDL  +GY+     +T T++ GVFAAGDV D  YRQA+TAAGTGC AAL+AE YL  +   E  +E
Sbjct:  241 HDPRTELFKGQLDLDDEGYLKVASPSTRTNLTGVFAAGDVVDHTYRQAITAAGTGCSAALDAERYLAALADSEQIAE 317          
BLAST of DN617286 vs. ExPASy Swiss-Prot
Match: TRXB_RICTY (Thioredoxin reductase OS=Rickettsia typhi GN=trxB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.524e-17
Identity = 41/68 (60.29%), Postives = 50/68 (73.53%), Query Frame = -2
Query:  292 HEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE 495
            H P T   +GQ+ +  D YIIT+ G+T TSV GVFAAGDVQDK YRQA+TAA +GCMAALE   +L +
Sbjct:  243 HTPNTTLFNGQIAIDDDNYIITQTGSTRTSVEGVFAAGDVQDKIYRQAITAAASGCMAALEVAKFLNK 310          
BLAST of DN617286 vs. ExPASy Swiss-Prot
Match: TRXB_RICPR (Thioredoxin reductase OS=Rickettsia prowazekii GN=trxB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.479e-16
Identity = 40/68 (58.82%), Postives = 49/68 (72.06%), Query Frame = -2
Query:  292 HEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE 495
            H P T    GQ+ +  D YI+T+ G+T T+V GVFAAGDVQDK YRQAVTAA +GCMAALE   +L +
Sbjct:  243 HAPNTALFKGQIAIDDDNYIVTQSGSTRTNVEGVFAAGDVQDKIYRQAVTAAASGCMAALEVAKFLNK 310          
BLAST of DN617286 vs. ExPASy Swiss-Prot
Match: TRXB_VIBCH (Thioredoxin reductase OS=Vibrio cholerae GN=trxB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.523e-16
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = -2
Query:  286 HEPATKFLDGQLDLHSDGYIITKPG----TTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIG 495
            H+P ++  +GQL++  +GYI+ K G     T TS+ GVFAAGDV D  YRQA+T+AGTGCMAAL+AE YL   G
Sbjct:  245 HQPNSQIFEGQLEM-KNGYIVVKSGLEGNATQTSIEGVFAAGDVMDHNYRQAITSAGTGCMAALDAERYLDSQG 317          
BLAST of DN617286 vs. ExPASy Swiss-Prot
Match: TRXB_STRCO (Thioredoxin reductase OS=Streptomyces coelicolor GN=trxB PE=3 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 5.523e-16
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = -2
Query:  265 HEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSQEDKSE 495
            H+P T+   GQLDL  +GY+     +T T++ GVF AGDV D  YRQA+TAAGTGC AA++AE +L  + S EDK+E
Sbjct:  241 HDPRTELFKGQLDLDPEGYLKVDAPSTRTNLTGVFGAGDVVDHTYRQAITAAGTGCSAAVDAEPFLAAL-SDEDKAE 316          
BLAST of DN617286 vs. ExPASy Swiss-Prot
Match: TRXB_HAEIN (Thioredoxin reductase OS=Haemophilus influenzae GN=trxB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.213e-16
Identity = 43/70 (61.43%), Postives = 51/70 (72.86%), Query Frame = -2
Query:  298 HEPATKFLDGQLDLHSDGYIITKPG----TTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYL 495
            H P T+   GQL+L++ GYI+ K G     T TSV GVFAAGDV D  YRQA+T+AGTGCMAAL+AE YL
Sbjct:  245 HSPNTEIFQGQLELNN-GYIVVKSGLDGNATATSVEGVFAAGDVMDHNYRQAITSAGTGCMAALDAERYL 313          
BLAST of DN617286 vs. ExPASy Swiss-Prot
Match: TRXB_MYCTU (Thioredoxin reductase OS=Mycobacterium tuberculosis GN=trxB PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 2.099e-15
Identity = 37/68 (54.41%), Postives = 51/68 (75.00%), Query Frame = -2
Query:  292 HEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE 495
            HEP +  +   +D+  DGY++ +  TT TS+PGVFAAGD+ D+ YRQAVTAAG+GC AA++AE +L E
Sbjct:  250 HEPRSGLVREAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTYRQAVTAAGSGCAAAIDAERWLAE 317          
BLAST of DN617286 vs. ExPASy Swiss-Prot
Match: TRXB_MYCLE (Bifunctional thioredoxin reductase/thioredoxin OS=Mycobacterium leprae GN=trxB/A PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.741e-15
Identity = 36/68 (52.94%), Postives = 50/68 (73.53%), Query Frame = -2
Query:  292 HEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE 495
            HEP +  +   +D+  DGY++ K  TT TS+ GVFAAGD+ D+ YRQA+TAAG+GC AA++AE +L E
Sbjct:  247 HEPRSSLVSDVVDIDPDGYVLVKGRTTSTSMDGVFAAGDLVDRTYRQAITAAGSGCAAAIDAERWLAE 314          
BLAST of DN617286 vs. ExPASy Swiss-Prot
Match: TRXB_ECOLI (Thioredoxin reductase OS=Escherichia coli (strain K12) GN=trxB PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 2.741e-15
Identity = 42/70 (60.00%), Postives = 50/70 (71.43%), Query Frame = -2
Query:  298 HEPATKFLDGQLDLHSDGYIITKPG----TTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYL 495
            H P T   +GQL+L + GYI  + G     T TS+PGVFAAGDV D  YRQA+T+AGTGCMAAL+AE YL
Sbjct:  246 HSPNTAIFEGQLELEN-GYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYL 314          
The following BLAST results are available for this feature:
BLAST of DN617286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
TRXB_PNEJI2.929e-1761.76Thioredoxin reductase OS=Pneumocystis jiroveci GN=... [more]
TRXB_STRCL6.524e-1753.25Thioredoxin reductase OS=Streptomyces clavuligerus... [more]
TRXB_RICTY6.524e-1760.29Thioredoxin reductase OS=Rickettsia typhi GN=trxB ... [more]
TRXB_RICPR2.479e-1658.82Thioredoxin reductase OS=Rickettsia prowazekii GN=... [more]
TRXB_VIBCH5.523e-1655.41Thioredoxin reductase OS=Vibrio cholerae GN=trxB P... [more]
TRXB_STRCO5.523e-1653.25Thioredoxin reductase OS=Streptomyces coelicolor G... [more]
TRXB_HAEIN7.213e-1661.43Thioredoxin reductase OS=Haemophilus influenzae GN... [more]
TRXB_MYCTU2.099e-1554.41Thioredoxin reductase OS=Mycobacterium tuberculosi... [more]
TRXB_MYCLE2.741e-1552.94Bifunctional thioredoxin reductase/thioredoxin OS=... [more]
TRXB_ECOLI2.741e-1560.00Thioredoxin reductase OS=Escherichia coli (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617286 ID=DN617286; Name=DN617286; organism=Citrus sinensis; type=EST; length=496bp
TAATATATGTCTTAAAAAATTCCATCCAACAATTACATTCTAAAATGCAG
CACTAATACCAACTTAAAACAAATTCCTTATCCAATTAGTTTTTCCAACC
AACTATTGGAAGCCAATAAATAAATCACTAAGACAGTACTGATTCATCAC
TTGAATTGGTCGAGAAAAAGCCTTCTTCATTCAGAGGTAGATTTAGATCA
AGTTTGCATGTAGACTATTCTGCTTTCATCATATCCCAGCCCTGCCATTA
TCCTACAGTGAAGATTCACTCTTATCCTCCTGAGATCCTATCTCTTGCAA
GTAATGCTCAGCTTCCAAGGCTGCCATGCACCCAGTGCCGGCGGCGGTAA
CAGCCTGCCTGTACTTCTTATCCTGAACATCTCCAGCAGCAAACACTCCA
GGGACACTAGTGTGTGTAGTCCCAGGTTTGGTAATAATATAACCATCAGA
ATGCAGGTCCAACTGACCATCCAAAAACTTAGTAGCAGGCTCGTGT
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