DN617282

Overview
NameDN617282
Unique NameDN617282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7791 contig Csv1_Contig7791:171..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_CANAL (Elongation factor 1-alpha OS=Candida albicans GN=TEF1 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.244e-37
Identity = 73/95 (76.84%), Postives = 84/95 (88.42%), Query Frame = -3
Query:  276 GQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 560
            GQI  GY+PVLDCHT+HIA KF  LV KIDRR+GK+LE+ PKF+K+GDA +VKM+PTKPM VE F+DYPPLGRFAVRDMRQTVAVGVIK+VEK D
Sbjct:  349 GQISAGYSPVLDCHTAHIACKFDTLVEKIDRRTGKKLEENPKFVKSGDAAIVKMVPTKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVEKSD 443          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_AJECG (Elongation factor 1-alpha OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=TEF PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.244e-37
Identity = 72/95 (75.79%), Postives = 84/95 (88.42%), Query Frame = -3
Query:  276 GQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 560
            GQ+G GYAPVLDCHT+HIA KFSEL+ KIDRR+GK +E  PKF+K+GDA +VKM+P+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIK+V K D
Sbjct:  350 GQVGAGYAPVLDCHTAHIACKFSELIEKIDRRTGKSVENNPKFIKSGDAAIVKMVPSKPMCVEPFTDYPPLGRFAVRDMRQTVAVGVIKSVIKSD 444          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_ABSGL (Elongation factor 1-alpha OS=Absidia glauca GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.625e-37
Identity = 74/95 (77.89%), Postives = 85/95 (89.47%), Query Frame = -3
Query:  276 GQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 560
            GQIG GYAPVLDCHT+HIA KF+EL+ KIDRRSGK+LE  PKF+K+GD+ +VKMIP+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK VEK D
Sbjct:  349 GQIGAGYAPVLDCHTAHIACKFAELLEKIDRRSGKKLEDAPKFVKSGDSAIVKMIPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVD 443          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A2_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis GN=eef1ao PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.625e-37
Identity = 75/94 (79.79%), Postives = 84/94 (89.36%), Query Frame = -3
Query:  279 GQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 560
            GQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE +PKFLK+GDA +V+MIP KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  351 GQISAGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKGVDKK 444          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_YARLI (Elongation factor 1-alpha OS=Yarrowia lipolytica GN=TEF PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 2.772e-37
Identity = 71/95 (74.74%), Postives = 84/95 (88.42%), Query Frame = -3
Query:  276 GQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 560
            GQIG GYAPVLDCHT+HIA KF  L+ KIDRR+GK++E  PKF+K+GDA +VKM+P+KPM VE F++YPPLGRFAVRDMRQTVAVGVIK+VEK D
Sbjct:  350 GQIGAGYAPVLDCHTAHIACKFDTLIEKIDRRTGKKMEDSPKFIKSGDAAIVKMVPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKSVEKSD 444          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_PODAN (Elongation factor 1-alpha OS=Podospora anserina GN=TEF PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.620e-37
Identity = 71/93 (76.34%), Postives = 84/93 (90.32%), Query Frame = -3
Query:  282 GQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 560
            GQ+G GYAPVLDCHT+HIA KFSEL+ KIDRR+GK +E+ PKF+K+GDA +VKM+P+KPM VE F++YPPLGRFAVRDMRQTVAVGVIK VEK
Sbjct:  350 GQVGAGYAPVLDCHTAHIACKFSELLQKIDRRTGKAVEESPKFIKSGDAAIVKMVPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKKVEK 442          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A2_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-2 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.620e-37
Identity = 72/95 (75.79%), Postives = 84/95 (88.42%), Query Frame = -3
Query:  276 GQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 560
            GQI  GYAPVLDCHT+HIA KFSEL+ KIDRRSGK++E  PKF+K+GD+ +VKM+P+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK VEK D
Sbjct:  349 GQISAGYAPVLDCHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVD 443          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A1_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.620e-37
Identity = 72/95 (75.79%), Postives = 84/95 (88.42%), Query Frame = -3
Query:  276 GQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 560
            GQI  GYAPVLDCHT+HIA KFSEL+ KIDRRSGK++E  PKF+K+GD+ +VKM+P+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK VEK D
Sbjct:  349 GQISAGYAPVLDCHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVD 443          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_ORYLA (Elongation factor 1-alpha OS=Oryzias latipes GN=eef1a PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.728e-37
Identity = 73/95 (76.84%), Postives = 84/95 (88.42%), Query Frame = -3
Query:  276 GQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 560
            GQI  GYAPVLDCHT+HIA KF+EL+ KIDRRSGK+LE  PKF+K+GDA +VK+IP KPMVVE FS+YPPLGRFAVRDMRQTVAVGVIK V+ K+
Sbjct:  351 GQINQGYAPVLDCHTAHIACKFNELIEKIDRRSGKKLEDNPKFVKSGDAAIVKLIPQKPMVVEPFSNYPPLGRFAVRDMRQTVAVGVIKAVDTKE 445          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_PODCU (Elongation factor 1-alpha OS=Podospora curvicolla GN=TEF PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.175e-37
Identity = 71/93 (76.34%), Postives = 84/93 (90.32%), Query Frame = -3
Query:  282 GQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 560
            GQ+G GYAPVLDCHT+HIA KF+EL+ KIDRR+GK +E+ PKF+K+GDA +VKMIP+KPM VE F++YPPLGRFAVRDMRQTVAVGVIK VEK
Sbjct:  350 GQVGAGYAPVLDCHTAHIACKFAELLQKIDRRTGKAVEESPKFIKSGDAAIVKMIPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKKVEK 442          
The following BLAST results are available for this feature:
BLAST of DN617282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
EF1A_CANAL1.244e-3776.84Elongation factor 1-alpha OS=Candida albicans GN=T... [more]
EF1A_AJECG1.244e-3775.79Elongation factor 1-alpha OS=Ajellomyces capsulata... [more]
EF1A_ABSGL1.625e-3777.89Elongation factor 1-alpha OS=Absidia glauca GN=TEF... [more]
EF1A2_XENLA1.625e-3779.79Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A_YARLI2.772e-3774.74Elongation factor 1-alpha OS=Yarrowia lipolytica G... [more]
EF1A_PODAN3.620e-3776.34Elongation factor 1-alpha OS=Podospora anserina GN... [more]
EF1A2_RHIRA3.620e-3775.79Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A1_RHIRA3.620e-3775.79Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A_ORYLA4.728e-3776.84Elongation factor 1-alpha OS=Oryzias latipes GN=ee... [more]
EF1A_PODCU6.175e-3776.34Elongation factor 1-alpha OS=Podospora curvicolla ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A01_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617282 ID=DN617282; Name=DN617282; organism=Citrus sinensis; type=EST; length=583bp
ATATATCGAGCACCGACTAAATTTTCAAAATCGAGCACTAACGGCTAATC
TTGAAACAAAATGTTTGACATCCAAAAACTGGTTTATCAACTTACCAAAA
AAAAACTCTGATATAAAACCAAATTCAGAGAATTAAAATGAAGTCCCGTA
AAACAAACTAAAACACGACAAAAATAGCATAAACAGAGAAAATAAAAGCT
AACTATAGCAGATAGATCCCAAAAAACTCCTCACTTCTTCTTGGCTGCAG
ACTTGGTGACCTTGGCACCTGTTGGATCCTTCTTTTCAACATTCTTAATC
ACACCAACAGCAACAGTCTGACGCATGTCCCTAACGGCAAAACGACCAAG
AGGTGGGTAGTCAGAGAAGGTTTCAACAACCATGGGCTTGGTGGGAATCA
TCTTAACCATTCCAGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCTCA
AGCTCCTTGCCTGATCGCCTATCAATCTTCGTCACGAGCTCAGAAAACTT
GACGGCAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTC
CAATCTGGCCCAGGGTGGTTCATGATGATGACC
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