DN617282

Overview
NameDN617282
Unique NameDN617282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7791 contig Csv1_Contig7791:171..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_HELZE (Elongation factor 1-alpha (Fragment) OS=Heliothis zea PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.249e-25
Identity = 48/77 (62.34%), Postives = 63/77 (81.82%), Query Frame = -3
Query:  330 GQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 560
            GQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  337 GQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_HELVI (Elongation factor 1-alpha (Fragment) OS=Heliothis virescens PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.249e-25
Identity = 48/77 (62.34%), Postives = 63/77 (81.82%), Query Frame = -3
Query:  330 GQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 560
            GQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  337 GQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_HELGL (Elongation factor 1-alpha (Fragment) OS=Helicoverpa gelotopoeon PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.249e-25
Identity = 48/77 (62.34%), Postives = 63/77 (81.82%), Query Frame = -3
Query:  330 GQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 560
            GQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  337 GQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_HELDI (Elongation factor 1-alpha (Fragment) OS=Heliocheilus discalis PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.249e-25
Identity = 48/77 (62.34%), Postives = 63/77 (81.82%), Query Frame = -3
Query:  330 GQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 560
            GQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  337 GQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_HELAM (Elongation factor 1-alpha (Fragment) OS=Helicoverpa armigera PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.249e-25
Identity = 48/77 (62.34%), Postives = 63/77 (81.82%), Query Frame = -3
Query:  330 GQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 560
            GQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  337 GQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_HELAL (Elongation factor 1-alpha (Fragment) OS=Heliocheilus albipunctella PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.249e-25
Identity = 48/77 (62.34%), Postives = 63/77 (81.82%), Query Frame = -3
Query:  330 GQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 560
            GQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  337 GQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_ANIIF (Elongation factor 1-alpha (Fragment) OS=Anicla infecta PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.249e-25
Identity = 48/77 (62.34%), Postives = 63/77 (81.82%), Query Frame = -3
Query:  330 GQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 560
            GQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  337 GQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_ADIBE (Elongation factor 1-alpha (Fragment) OS=Adisura bella PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.249e-25
Identity = 48/77 (62.34%), Postives = 63/77 (81.82%), Query Frame = -3
Query:  330 GQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 560
            GQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  337 GQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_SULSO (Elongation factor 1-alpha OS=Sulfolobus solfataricus GN=tuf PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 1.744e-23
Identity = 48/90 (53.33%), Postives = 69/90 (76.67%), Query Frame = -3
Query:  285 IGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 554
            + NGY PV+  HT+ +A + SELV+K+D R+G+E EK P+FLK GD  +VK  P KP+ VE ++++PPLGRFA+RDM +TV VG+I +V+
Sbjct:  339 LANGYTPVIHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDVK 428          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAE (Elongation factor 1-alpha OS=Pyrobaculum aerophilum GN=tuf PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.628e-23
Identity = 48/90 (53.33%), Postives = 70/90 (77.78%), Query Frame = -3
Query:  285 IGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 554
            IG GYAPV+  HT+ + V+ +ELV+K+D R+G+ +E++P+F+K GD  +VK+ P KP+V E FSD+PPLGRFA+RDM +T+A G I  V+
Sbjct:  348 IGPGYAPVMHIHTATVPVQITELVSKLDPRTGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSDFPPLGRFALRDMGRTIAAGQILEVK 437          
The following BLAST results are available for this feature:
BLAST of DN617282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
EF1A_HELZE9.249e-2562.34Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELVI9.249e-2562.34Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELGL9.249e-2562.34Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELDI9.249e-2562.34Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]
EF1A_HELAM9.249e-2562.34Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELAL9.249e-2562.34Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]
EF1A_ANIIF9.249e-2562.34Elongation factor 1-alpha (Fragment) OS=Anicla inf... [more]
EF1A_ADIBE9.249e-2562.34Elongation factor 1-alpha (Fragment) OS=Adisura be... [more]
EF1A_SULSO1.744e-2353.33Elongation factor 1-alpha OS=Sulfolobus solfataric... [more]
EF1A_PYRAE6.628e-2353.33Elongation factor 1-alpha OS=Pyrobaculum aerophilu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A01_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617282 ID=DN617282; Name=DN617282; organism=Citrus sinensis; type=EST; length=583bp
ATATATCGAGCACCGACTAAATTTTCAAAATCGAGCACTAACGGCTAATC
TTGAAACAAAATGTTTGACATCCAAAAACTGGTTTATCAACTTACCAAAA
AAAAACTCTGATATAAAACCAAATTCAGAGAATTAAAATGAAGTCCCGTA
AAACAAACTAAAACACGACAAAAATAGCATAAACAGAGAAAATAAAAGCT
AACTATAGCAGATAGATCCCAAAAAACTCCTCACTTCTTCTTGGCTGCAG
ACTTGGTGACCTTGGCACCTGTTGGATCCTTCTTTTCAACATTCTTAATC
ACACCAACAGCAACAGTCTGACGCATGTCCCTAACGGCAAAACGACCAAG
AGGTGGGTAGTCAGAGAAGGTTTCAACAACCATGGGCTTGGTGGGAATCA
TCTTAACCATTCCAGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCTCA
AGCTCCTTGCCTGATCGCCTATCAATCTTCGTCACGAGCTCAGAAAACTT
GACGGCAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTC
CAATCTGGCCCAGGGTGGTTCATGATGATGACC
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