DN135279

Overview
NameDN135279
Unique NameDN135279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_YEAST (Cytochrome c oxidase subunit 2 OS=Saccharomyces cerevisiae GN=COX2 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.075e-29
Identity = 71/161 (44.10%), Postives = 93/161 (57.76%), Query Frame = 3
Query:  174 LLEWLFLTIAPCDAAEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQR-IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLL 653
            LL     T    D   P+   FQD+ATP  +G                          +    Y KNPI  + I HG TIE++WTIFP++IL+ IA PSF LLY  DE V+ PA+TIKAIG+QWYW YEYSD+ +   +++ F+SY+IP++ LE GQLRLL
Sbjct:    4 LLRLQLTTFIMNDVPTPYACYFQDSATPNQEGILELHDNIMFYLLVILGLVSWMLYTIV--MTYSKNPIAYKYIKHGQTIEVIWTIFPAVILLIIAFPSFILLYLCDE-VISPAMTIKAIGYQWYWKYEYSDFINDSGETVEFESYVIPDELLEEGQLRLL 161          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_LACTH (Cytochrome c oxidase subunit 2 OS=Lachancea thermotolerans GN=COX2 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.768e-28
Identity = 70/149 (46.98%), Postives = 88/149 (59.06%), Query Frame = 3
Query:  210 DAAEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIV-HGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLL 653
            D   P+   FQD+ATP  +G                               Y KNPI  + + HG TIEI+WTIFP++IL+ IA PSF LLY  DEV+  PA+TIKAIG QWYW YEYSD+ +   +++ F+SY+IPED LE GQLRLL
Sbjct:   16 DVPTPYNTYFQDSATPNQEGILELHDNIMFYLLVILGLVSWLLFTITRT--YSKNPIAYKYIKHGQTIEIIWTIFPAVILLIIAFPSFILLYLCDEVI-SPAMTIKAIGLQWYWKYEYSDFINDSGETVEFESYVIPEDLLEDGQLRLL 161          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_SACKL (Cytochrome c oxidase subunit 2 OS=Saccharomyces kluyveri GN=COX2 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.309e-28
Identity = 69/149 (46.31%), Postives = 89/149 (59.73%), Query Frame = 3
Query:  210 DAAEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIV-HGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLL 653
            D   P+ + FQD+ATP  +G                               Y KNPI  + + HG TIEI+WTIFP+++L+ IA PSF LLY  DEV+  PA+TIKAIG QWYW YEYSD+ +   +++ F+SY+IPED LE GQLRLL
Sbjct:   16 DVPTPYGVYFQDSATPNQEGILELHDNIMFYLLVILGLVSWLLFTITRT--YSKNPIAYKYIKHGQTIEIIWTIFPAVVLLIIAFPSFILLYLCDEVI-SPAMTIKAIGLQWYWKYEYSDFINESGETVEFESYVIPEDLLEDGQLRLL 161          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_SCHPO (Cytochrome c oxidase subunit 2 OS=Schizosaccharomyces pombe GN=cox2 PE=3 SV=4)

HSP 1 Score: 124.79 bits (312), Expect = 3.938e-28
Identity = 62/159 (38.99%), Postives = 92/159 (57.86%), Query Frame = 3
Query:  186 LFLTIAPCDAAEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIV-HGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            LF      DA   W L FQD A+P   G                        +A+  ++Y  +PI  +   HG+ +E +WT+ P++IL+ +A+PSF LLY +DEV   P++T+KAIG QW+WTYE +D+ +++ + + FDSYM+PE+DLE G LR L V
Sbjct:    2 LFFNSILNDAPSSWALYFQDGASPSYLGVTHLNDYLMFYLTFIFIGVIYAICKAVIEYNYNSHPIAAKYTTHGSIVEFIWTLIPALILILVALPSFKLLYLLDEVQ-KPSMTVKAIGRQWFWTYELNDFVTNENEPVSFDSYMVPEEDLEEGSLRQLEV 159          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_PICCA (Cytochrome c oxidase subunit 2 OS=Pichia canadensis GN=COX2 PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.143e-28
Identity = 68/149 (45.64%), Postives = 89/149 (59.73%), Query Frame = 3
Query:  210 DAAEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQR-IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLL 653
            D   PW + FQD+ATP  +G                          +      KNP+P + +VHG TIEI+WTI P+++L+ IA PSF LLY  DEV+  PA+TIKAIG QWYW YEYSD+ +   +++ F+SY+IPED LE GQL LL
Sbjct:   12 DVPTPWGVYFQDSATPNHEGIIELHDNIMFYLVLILCLVSWLLFSIVKDG--SKNPLPHKYLVHGQTIEIIWTILPALVLLVIAFPSFILLYLCDEVI-SPAMTIKAIGLQWYWKYEYSDFINDSGETIEFESYVIPEDLLEDGQLPLL 157          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_YARLI (Cytochrome c oxidase subunit 2 OS=Yarrowia lipolytica GN=COX2 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.773e-28
Identity = 68/150 (45.33%), Postives = 87/150 (58.00%), Query Frame = 3
Query:  210 DAAEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            D   P+ L FQD+ATP   G                          + +F    +   + + HGTT+EI+WTIFP +IL+FIA PSF LLY  DEV+ DPA+TIKAI  QWYWTYEYSD+     + + FDSY++P D LE GQLR+L V
Sbjct:    7 DVPVPYGLYFQDSATPTFDGIIELHDIVMFYIVVTIVLVSYLLFVIIKNFS-NDHISYKYLTHGTTLEIVWTIFPVVILLFIAFPSFILLYLCDEVI-DPAMTIKAIASQWYWTYEYSDFIGETGEIVQFDSYIVPTDMLENGQLRMLDV 154          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_DEKBR (Cytochrome c oxidase subunit 2 OS=Dekkera bruxellensis GN=COX2 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.773e-28
Identity = 67/150 (44.67%), Postives = 87/150 (58.00%), Query Frame = 3
Query:  210 DAAEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            D   PW + FQD+ATP M+G                          L  +++   P  + + HG  IEI+WT FP++IL+ IA PSF LLY  DEV+  PA+TIKA+G QWYW YEYSD+     +++ F+SYMIPED LE GQLR L V
Sbjct:   10 DVPTPWGMFFQDSATPNMEGMMELHNNVMFYLCMMLGFVSYMLYNMLTTYNHSVLPY-KYLYHGQFIEIVWTTFPAMILLIIAFPSFILLYICDEVIA-PAMTIKAMGLQWYWKYEYSDFIDDKGETIEFESYMIPEDLLEEGQLRQLDV 157          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_ASHGO (Cytochrome c oxidase subunit 2 OS=Ashbya gossypii GN=COX2 PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.954e-27
Identity = 68/154 (44.16%), Postives = 90/154 (58.44%), Query Frame = 3
Query:  195 TIAPCDAAEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQR-IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLL 653
            TI   D   P+ + FQD+ TP  +G                       +  +    YK NPI  + I HG  IEI+WTI P+IIL+ IA PSF LLY  DE V+ PA+TIK IG QWYW YEYSD+ + + +++ ++SYMIPE+ LE GQLR+L
Sbjct:    8 TIINNDVPTPYNMYFQDSTTPHQEGILELHDNIMFYMLTVLGLVSWMMIIII--KDYKNNPITYKYIKHGQMIEIIWTILPAIILLMIAFPSFILLYLCDE-VISPAMTIKVIGLQWYWKYEYSDFINDNGETIEYESYMIPEELLEEGQLRML 158          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_DEBHA (Cytochrome c oxidase subunit 2 OS=Debaryomyces hansenii GN=COX2 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.161e-26
Identity = 62/149 (41.61%), Postives = 87/149 (58.39%), Query Frame = 3
Query:  210 DAAEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIV-HGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLL 653
            D   PW + FQDAATP  +G                          +    YK N    + + HG T+EI+WT+FP+++L+ +A PSF LLY  DEV+  PA+T+K +G QWYW YEYSD+ S   +++ ++SY++PED LE GQLRLL
Sbjct:    5 DVPTPWGMRFQDAATPNAEGMHELYDHMMYYLALMLGLVSYMLYVMMKD--YKNNTFAYKYIKHGQTLEIMWTMFPAVMLLLMAFPSFMLLYLCDEVLT-PAMTVKVVGLQWYWKYEYSDFVSETGETVEYESYVMPEDMLEEGQLRLL 150          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_SACEX (Cytochrome c oxidase subunit 2 OS=Saccharomyces exiguus GN=COX2 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.686e-26
Identity = 64/149 (42.95%), Postives = 88/149 (59.06%), Query Frame = 3
Query:  210 DAAEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIV-HGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLL 653
            D   P+   FQD+ATP  +G                          +    Y +NP+  + + HG TIEI+W IFP++IL+ IA PSF LLY  DEV+  PA+TIKAIG+QWYW YEY D+ + + +++ F+SY+IP+  LE GQLRLL
Sbjct:   14 DVPTPYGFYFQDSATPNQEGILELHDNIMFYLVVILGLVSWMLFTIVRT--YSRNPMAYKYIKHGQTIEIIWKIFPAVILLTIAFPSFILLYLCDEVI-SPAMTIKAIGYQWYWKYEYFDFINDNGETIEFESYVIPDSLLEEGQLRLL 159          
The following BLAST results are available for this feature:
BLAST of DN135279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
COX2_YEAST6.075e-2944.10Cytochrome c oxidase subunit 2 OS=Saccharomyces ce... [more]
COX2_LACTH1.768e-2846.98Cytochrome c oxidase subunit 2 OS=Lachancea thermo... [more]
COX2_SACKL2.309e-2846.31Cytochrome c oxidase subunit 2 OS=Saccharomyces kl... [more]
COX2_SCHPO3.938e-2838.99Cytochrome c oxidase subunit 2 OS=Schizosaccharomy... [more]
COX2_PICCA5.143e-2845.64Cytochrome c oxidase subunit 2 OS=Pichia canadensi... [more]
COX2_YARLI8.773e-2845.33Cytochrome c oxidase subunit 2 OS=Yarrowia lipolyt... [more]
COX2_DEKBR8.773e-2844.67Cytochrome c oxidase subunit 2 OS=Dekkera bruxelle... [more]
COX2_ASHGO1.954e-2744.16Cytochrome c oxidase subunit 2 OS=Ashbya gossypii ... [more]
COX2_DEBHA2.161e-2641.61Cytochrome c oxidase subunit 2 OS=Debaryomyces han... [more]
COX2_SACEX3.686e-2642.95Cytochrome c oxidase subunit 2 OS=Saccharomyces ex... [more]

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Properties
Property NameValue
Genbank descriptionwca08h12 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135279 ID=DN135279; Name=DN135279; organism=Citrus sinensis; type=EST; length=660bp
CCGGGGGCAAGNNAAGCTGACTGAGTGTTCATTAATGCCCAAAACTCCCT
NGCCTTTCTTGGTTGGACCAAGGCGATTTCTGTCTTCCTGATTTGGGATA
GTAAGAGTCAGTCTCTCTTTTTTGGGGGGGAGCAGAGCAGTCAAAGAATG
AAGCAAAGCAAATGATTGTTCGTTTACTAGAATGGTTATTCCTTACAATT
GCTCCTTGTGATGCAGCGGAACCGTGGCAATTAGGATTTCAAGACGCAGC
AACACCTATGATGCAAGGAATAATAGACTTACATCACGATATCTTCTTCT
TTCTCATTCTGATTTTGGTTTTCGTATTATGGATCTTGGTTCGTGCTTTA
TGGCATTTCCATTATAAAAAAAATCCAATCCCGCAAAGGATTGTTCATGG
AACTACTATCGAGATTCTTTGGACCATCTTTCCTAGTATCATCTTGATGT
TCATTGCTATACCATCATTTGCTCTGTTATACTCAATGGACGAGGTAGTA
GTAGATCCAGCCATCACTATCAAAGCTATTGGGCATCAATGGTATTGGAC
TTATGAGTATTCAGACTATAACAGTTCCGATGAACAGTCACTCATTTTTG
ACAGTTATATGATTCCAGAGGATGATCTAGAATTGGGTCAATTACGTTTA
TTANNNGTGG
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