DN135279

Overview
NameDN135279
Unique NameDN135279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_ASCSU (Cytochrome c oxidase subunit 2 OS=Ascaris suum GN=COII PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.897e-14
Identity = 39/83 (46.99%), Postives = 55/83 (66.27%), Query Frame = 3 
Query:  411 EILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            E+L ++FP++IL+   +PS +LLY    + +D ++T+K  GHQWYW+YE+SD        L FDSYM   D LELG+ RLL V
Sbjct:   64 ELLCSVFPTLILVMQMVPSLSLLYYYGLMNLDSSLTVKVTGHQWYWSYEFSDI-----PGLEFDSYMKSLDQLELGEPRLLEV 141
[Close]
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_APIFL (Cytochrome c oxidase subunit 2 OS=Apis florea GN=COII PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.897e-14
Identity = 40/82 (48.78%), Postives = 55/82 (67.07%), Query Frame = 3 
Query:  408 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLL 653
            IEI+W I P +IL+ I  PS  +LY +DE+V +P  +IK+IGHQWYW+YEY ++N+ +     F SYM+   D  L Q RLL
Sbjct:   61 IEIIWMIVPIVILLIICFPSLKILYLIDEIV-NPFFSIKSIGHQWYWSYEYPEFNNIE-----FYSYMLNYSD--LNQFRLL 134
The following BLAST results are available for this feature:
BLAST of DN135279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
COX2_ASCSU1.897e-1446.99Cytochrome c oxidase subunit 2 OS=Ascaris suum GN=... [more]
COX2_APIFL1.897e-1448.78Cytochrome c oxidase subunit 2 OS=Apis florea GN=C... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionwca08h12 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135279 ID=DN135279; Name=DN135279; organism=Citrus sinensis; type=EST; length=660bp
CCGGGGGCAAGNNAAGCTGACTGAGTGTTCATTAATGCCCAAAACTCCCT
NGCCTTTCTTGGTTGGACCAAGGCGATTTCTGTCTTCCTGATTTGGGATA
GTAAGAGTCAGTCTCTCTTTTTTGGGGGGGAGCAGAGCAGTCAAAGAATG
AAGCAAAGCAAATGATTGTTCGTTTACTAGAATGGTTATTCCTTACAATT
GCTCCTTGTGATGCAGCGGAACCGTGGCAATTAGGATTTCAAGACGCAGC
AACACCTATGATGCAAGGAATAATAGACTTACATCACGATATCTTCTTCT
TTCTCATTCTGATTTTGGTTTTCGTATTATGGATCTTGGTTCGTGCTTTA
TGGCATTTCCATTATAAAAAAAATCCAATCCCGCAAAGGATTGTTCATGG
AACTACTATCGAGATTCTTTGGACCATCTTTCCTAGTATCATCTTGATGT
TCATTGCTATACCATCATTTGCTCTGTTATACTCAATGGACGAGGTAGTA
GTAGATCCAGCCATCACTATCAAAGCTATTGGGCATCAATGGTATTGGAC
TTATGAGTATTCAGACTATAACAGTTCCGATGAACAGTCACTCATTTTTG
ACAGTTATATGATTCCAGAGGATGATCTAGAATTGGGTCAATTACGTTTA
TTANNNGTGG
back to top