DN135279

Overview
NameDN135279
Unique NameDN135279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_BREAN (Cytochrome c oxidase subunit 2 OS=Brettanomyces anomalus GN=COX2 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.686e-26
Identity = 64/151 (42.38%), Postives = 87/151 (57.62%), Query Frame = 3
Query:  210 DAAEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQR-IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            D   PW + FQD+ATP M+G                          L   H  K+ +P + + HG  +E++WT  P+++L+ +A PSF LLY  DEV+  PA+TIKA+G QWYW YEYSD+     +++ F+SYMIPED LE GQLR L V
Sbjct:    9 DVPTPWGMFFQDSATPNMEGMMELHNNVMFYLCMMLGFVSYMLYNML---HNNKSVLPYKYLYHGQFMEMVWTTIPAMMLLMMAFPSFILLYMCDEVMA-PAMTIKAMGLQWYWKYEYSDFMDDKGETMEFESYMIPEDLLEEGQLRQLDV 155          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_EENNA (Cytochrome c oxidase subunit 2 OS=Eeniella nana GN=COX2 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.072e-25
Identity = 63/151 (41.72%), Postives = 88/151 (58.28%), Query Frame = 3
Query:  210 DAAEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIV-HGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            D   PW + FQD+ATP M+G                          +    Y K+ +  + + HG  +E++WT FP+++L+ +A PSF LLY  DEV+  PA+TIKA+G QWYW YEYSD+     +++ F+SYMIPED LE GQLR+L V
Sbjct:   12 DVPTPWAMYFQDSATPNMEGMMELHNNVLFYLCVMLGFVTYMLYNVMTV--YNKSAMAYKYMNHGQFMEMMWTTFPAMMLLMMAFPSFMLLYMCDEVMA-PAMTIKAMGLQWYWKYEYSDFMVEKGETMEFESYMIPEDLLEDGQLRMLDV 159          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_CANAL (Cytochrome c oxidase subunit 2 OS=Candida albicans GN=COX2 PE=3 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.072e-25
Identity = 66/149 (44.30%), Postives = 84/149 (56.38%), Query Frame = 3
Query:  210 DAAEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIV-HGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLL 653
            D   PW +  QD+ATP  +G                          +    YK N    + V HG  IEI+WTIFP++IL+ IA PSF LLY  DEV+  PA+TIK IG QWYW YEYSD+  S  +++ F+SY+IP+D LE G LRLL
Sbjct:    5 DVPTPWGIRLQDSATPNAEGIHELYDHIMFYLCLILGLVSYILYVIIKD--YKDNRFAYKYVRHGQVIEIIWTIFPAVILLLIAFPSFILLYLCDEVLT-PAMTIKVIGLQWYWKYEYSDFVDSIGETIEFESYVIPDDMLEPGALRLL 150          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_BRENA (Cytochrome c oxidase subunit 2 OS=Brettanomyces naardenensis GN=COX2 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.401e-25
Identity = 63/151 (41.72%), Postives = 87/151 (57.62%), Query Frame = 3
Query:  210 DAAEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIV-HGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            D   PW + FQD+ATP M+G                               Y K+ +  + + HG  IE++WT FP+++L+ +A PSF LLY  DEV+  PA+TIKA+G QWYW YEYSD+     +++ F+SY+IPED LE GQLR+L V
Sbjct:   13 DVPTPWAMYFQDSATPNMEGIMELHNNVVFYLIIMLCFVTYMLYNI--STVYNKSAVAYKYMNHGQFIEMVWTTFPAVMLLIMAFPSFMLLYICDEVMA-PAMTIKAMGLQWYWKYEYSDFMDEKGETIEFESYIIPEDLLEDGQLRMLDV 160          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_BRECS (Cytochrome c oxidase subunit 2 OS=Brettanomyces custersianus GN=COX2 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.075e-25
Identity = 63/151 (41.72%), Postives = 86/151 (56.95%), Query Frame = 3
Query:  210 DAAEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVH-GTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            D   PW + FQD+ATP M+G                          L    Y K+ +P + ++ G  +E++WT  P+++L+ IA PSF LLY  DEV+  PA+TIKA+G QWYW YEYSD+      ++ F+SYMIPED L+ GQLR L V
Sbjct:   12 DVPTPWAMFFQDSATPNMEGMLELHNNVVFYLCMMLGFVTFMLYNMLTT--YNKSVMPYKYLNQGQFMEMMWTTLPAVMLLMIAFPSFILLYMCDEVMA-PAMTIKAMGLQWYWKYEYSDFMDEKGDTMEFESYMIPEDLLDEGQLRQLDV 159          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX1_ACACA (Cytochrome c oxidase subunit 1+2 OS=Acanthamoeba castellanii GN=COX1/2 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.022e-24
Identity = 74/219 (33.79%), Postives = 95/219 (43.38%), Query Frame = 3
Query:  210 DAAEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKK--NPIPQ---------------------------RIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYS-----------DYNSSD-------------------------------EQSLIFDSYMIPEDDLELGQLRLL 653
            D    W++GFQD  TP+  G                       +     F+Y    N +P+                            I HGTTIEI+WTI P+ IL+FIA+PSFALLY+MDE ++DP +T+K IGHQWYW+YEYS           DY+S D                               E ++ FDSYMI E +L LG LRLL
Sbjct:  559 DHTNSWKIGFQDPTTPIAYGIIKLHDHILFFLAVILFVVGYLLLSTYKKFYYGSLNNDLPESKRISLFDTLINTYKENLSFNVTNRTYNINHGTTIEIIWTILPAFILLFIAVPSFALLYAMDE-IIDPVLTVKVIGHQWYWSYEYSDYSVVYSNRMLDYDSIDRFAAMEMMYKGMGYLKDRSLLSYLYIPMVIPETTIKFDSYMIHEAELNLGDLRLL 776          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_DROYA (Cytochrome c oxidase subunit 2 OS=Drosophila yakuba GN=mt:CoII PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.641e-24
Identity = 59/143 (41.26%), Postives = 87/143 (60.84%), Query Frame = 3
Query:  231 LGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            LG QD+A+P+M+                        V  L    +  N + + ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE + +P++T+K+IGHQWYW+YEYSD+N+ +     FDSYMIP ++L +   RLL V
Sbjct:    7 LGLQDSASPLME-----QLIFFHDHALLILVMITVLVGYLMFMLFFNNYVNRFLLHGQLIEMIWTILPAIILLFIALPSLRLLYLLDE-INEPSVTLKSIGHQWYWSYEYSDFNNIE-----FDSYMIPTNELAIDGFRLLDV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_ANOQU (Cytochrome c oxidase subunit 2 OS=Anopheles quadrimaculatus GN=COXII PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.641e-24
Identity = 53/90 (58.89%), Postives = 69/90 (76.67%), Query Frame = 3
Query:  390 IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            ++HG TIEI+WT+ P+IILMFIA+PS  LLY MDE+   P+IT+K++GHQWYW+YEYSD+      +L FDSYMIP ++LE    RLL V
Sbjct:   55 LLHGQTIEIIWTVLPAIILMFIALPSLRLLYLMDEINT-PSITLKSVGHQWYWSYEYSDF-----LNLEFDSYMIPTNELETNGFRLLDV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_SIMVI (Cytochrome c oxidase subunit 2 OS=Simulium vittatum GN=COII PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.450e-24
Identity = 52/90 (57.78%), Postives = 68/90 (75.56%), Query Frame = 3
Query:  390 IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            ++HG TIEI+WTI P+I+LMFIA+PS  +LY +DE +  PAIT+K IGHQWYW+YEYSD+      +L FDSYM+P ++LE    RLL V
Sbjct:   55 LLHGQTIEIIWTILPAIVLMFIALPSLRILYLLDE-INSPAITLKTIGHQWYWSYEYSDF-----MNLEFDSYMVPTNELETNGFRLLDV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_CROLA (Cytochrome c oxidase subunit 2 OS=Crossostoma lacustre GN=mt-co2 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.450e-24
Identity = 62/146 (42.47%), Postives = 82/146 (56.16%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLL 653
            A P QLGFQDAA+P+M+                        +  +             I+    IEI+WT+ P++IL+ IA+PS  +LY MDE+  DP +TIKA+GHQWYW+YEY+DY     ++L FDSYMIP  DL  GQ RLL
Sbjct:    2 AHPTQLGFQDAASPVMEELLHFHDHALMIVFLISALVLYVIITTV-----STKLTNMYILDSQEIEIVWTVLPALILILIALPSLRILYLMDEIN-DPHLTIKAMGHQWYWSYEYTDY-----ENLSFDSYMIPTQDLTPGQFRLL 136          
The following BLAST results are available for this feature:
BLAST of DN135279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
COX2_BREAN3.686e-2642.38Cytochrome c oxidase subunit 2 OS=Brettanomyces an... [more]
COX2_EENNA1.072e-2541.72Cytochrome c oxidase subunit 2 OS=Eeniella nana GN... [more]
COX2_CANAL1.072e-2544.30Cytochrome c oxidase subunit 2 OS=Candida albicans... [more]
COX2_BRENA1.401e-2541.72Cytochrome c oxidase subunit 2 OS=Brettanomyces na... [more]
COX2_BRECS4.075e-2541.72Cytochrome c oxidase subunit 2 OS=Brettanomyces cu... [more]
COX1_ACACA2.022e-2433.79Cytochrome c oxidase subunit 1+2 OS=Acanthamoeba c... [more]
COX2_DROYA2.641e-2441.26Cytochrome c oxidase subunit 2 OS=Drosophila yakub... [more]
COX2_ANOQU2.641e-2458.89Cytochrome c oxidase subunit 2 OS=Anopheles quadri... [more]
COX2_SIMVI3.450e-2457.78Cytochrome c oxidase subunit 2 OS=Simulium vittatu... [more]
COX2_CROLA3.450e-2442.47Cytochrome c oxidase subunit 2 OS=Crossostoma lacu... [more]

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Properties
Property NameValue
Genbank descriptionwca08h12 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135279 ID=DN135279; Name=DN135279; organism=Citrus sinensis; type=EST; length=660bp
CCGGGGGCAAGNNAAGCTGACTGAGTGTTCATTAATGCCCAAAACTCCCT
NGCCTTTCTTGGTTGGACCAAGGCGATTTCTGTCTTCCTGATTTGGGATA
GTAAGAGTCAGTCTCTCTTTTTTGGGGGGGAGCAGAGCAGTCAAAGAATG
AAGCAAAGCAAATGATTGTTCGTTTACTAGAATGGTTATTCCTTACAATT
GCTCCTTGTGATGCAGCGGAACCGTGGCAATTAGGATTTCAAGACGCAGC
AACACCTATGATGCAAGGAATAATAGACTTACATCACGATATCTTCTTCT
TTCTCATTCTGATTTTGGTTTTCGTATTATGGATCTTGGTTCGTGCTTTA
TGGCATTTCCATTATAAAAAAAATCCAATCCCGCAAAGGATTGTTCATGG
AACTACTATCGAGATTCTTTGGACCATCTTTCCTAGTATCATCTTGATGT
TCATTGCTATACCATCATTTGCTCTGTTATACTCAATGGACGAGGTAGTA
GTAGATCCAGCCATCACTATCAAAGCTATTGGGCATCAATGGTATTGGAC
TTATGAGTATTCAGACTATAACAGTTCCGATGAACAGTCACTCATTTTTG
ACAGTTATATGATTCCAGAGGATGATCTAGAATTGGGTCAATTACGTTTA
TTANNNGTGG
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