DN135279

Overview
NameDN135279
Unique NameDN135279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_EQUAS (Cytochrome c oxidase subunit 2 OS=Equus asinus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.311e-23
Identity = 60/153 (39.22%), Postives = 87/153 (56.86%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLGFQDA +P+M+                               +   + +  ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  +P++T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL+ G+LRLL V
Sbjct:    2 AYPFQLGFQDATSPIMEELLHFHDHTLMIVFLISSLV----------LYIISSMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-NPSLTVKTMGHQWYWSYEYTDY-----EDLTFDSYMIPTSDLKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_AEDAE (Cytochrome c oxidase subunit 2 OS=Aedes aegypti GN=COII PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.311e-23
Identity = 54/90 (60.00%), Postives = 67/90 (74.44%), Query Frame = 3
Query:  390 IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            ++HG TIEI+WTI P+IILMFIA PS  LLY MDE +  P IT+K IGHQWYW+YEYS++      +L FDSYMIP ++L+L   RLL V
Sbjct:   55 LLHGQTIEIIWTILPAIILMFIAFPSLRLLYLMDE-INSPLITLKVIGHQWYWSYEYSNF-----LNLEFDSYMIPTNELDLNGFRLLDV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_DUGDU (Cytochrome c oxidase subunit 2 OS=Dugong dugon GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.712e-23
Identity = 60/151 (39.74%), Postives = 85/151 (56.29%), Query Frame = 3
Query:  222 PWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            P QLG QDA +P+M+                               +   + +  ++ H +T     +E +WTI P++IL+ IA+PS  +LY MDE+  DP++T+K +GHQWYW+YEY+DY     + L FDSYMIP +DLE GQLRLL V
Sbjct:    4 PLQLGLQDATSPIMEELTHFHDHTLMIVFLISSLV----------LYIISSMLTTKLTHTSTMDAQEVETIWTILPAMILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLTFDSYMIPTNDLEPGQLRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_DIDMA (Cytochrome c oxidase subunit 2 OS=Didelphis marsupialis virginiana GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.712e-23
Identity = 60/151 (39.74%), Postives = 85/151 (56.29%), Query Frame = 3
Query:  222 PWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            P QLGFQDA +P+M+                        +  L            ++ H +T     +E +WTI P++IL+ IA+PS  +LY MDE+  +P +T+KA+GHQWYW+YE++DY     ++L+FDSYMIP  DL  GQLRLL V
Sbjct:    4 PMQLGFQDATSPIMEELMYFHDHTLMIVFLISSLVLYIIILML----------TTKLTHTSTMDAQEVETIWTILPAVILILIALPSLRILYMMDEIY-NPYLTVKAMGHQWYWSYEFTDY-----ENLMFDSYMIPTKDLSPGQLRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_DANRE (Cytochrome c oxidase subunit 2 OS=Danio rerio GN=mt-co2 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.712e-23
Identity = 61/146 (41.78%), Postives = 82/146 (56.16%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLL 653
            A P QLGFQDAA+P+M+                        +  +           + I+    IEI+WT+ P+IIL+ IA+PS  +LY MDE+  DP +TIKA+GHQWYW+YEY+DY     ++L FDSYM+P  DL  G  RLL
Sbjct:    2 AHPAQLGFQDAASPVMEELLCFHDHALMIVFLISTLVLYIIIAMV-----STKLTNKFILDSQEIEIVWTVLPAIILILIALPSLRILYLMDEIN-DPHVTIKAVGHQWYWSYEYTDY-----ENLEFDSYMVPTQDLTPGGFRLL 136          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_PIG (Cytochrome c oxidase subunit 2 OS=Sus scrofa GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.920e-23
Identity = 61/153 (39.87%), Postives = 85/153 (55.56%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLGFQDA +P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  +PA+T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL+ G++RLL V
Sbjct:    2 AYPFQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLTFDSYMIPTSDLKPGEMRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_MACRO (Cytochrome c oxidase subunit 2 OS=Macropus robustus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.920e-23
Identity = 61/151 (40.40%), Postives = 83/151 (54.97%), Query Frame = 3
Query:  222 PWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            P QLGFQDA +P+M+                        +  L            ++ H +T     +E +WTI P++IL+ IA+PS  +LY MDE+  +P +TIKA+GHQWYW+YEY+DY     + L FDSYMIP  +L  GQLRLL V
Sbjct:    4 PMQLGFQDATSPIMEELTYFHDHTLMIVFLISSLVLYIIILML----------TTKLTHTSTMDAQEVETIWTILPAVILVLIALPSLRILYMMDEIY-NPYLTIKAMGHQWYWSYEYTDY-----EDLTFDSYMIPTQELTPGQLRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_DROSU (Cytochrome c oxidase subunit 2 OS=Drosophila subobscura GN=mt:CoII PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.920e-23
Identity = 58/143 (40.56%), Postives = 85/143 (59.44%), Query Frame = 3
Query:  231 LGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            LG QD+A+P+M+                        V   ++ +     + + ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE+  +P+IT+K+IGHQWYW+YEYSD+N  +     FDSYMIP ++L     RLL V
Sbjct:    7 LGLQDSASPLMEQLIFFHDHALLILVMITVLVGYLMVMLFFNSY-----VNRFLLHGQLIEMIWTILPAIILLFIAMPSLRLLYLLDEIN-EPSITLKSIGHQWYWSYEYSDFNDIE-----FDSYMIPTNELSNDGFRLLDV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_DROPS (Cytochrome c oxidase subunit 2 OS=Drosophila pseudoobscura pseudoobscura GN=mt:CoII PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.920e-23
Identity = 59/143 (41.26%), Postives = 86/143 (60.14%), Query Frame = 3
Query:  231 LGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            LG QD+A+P+M+                        V  L    +  + + + ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE+  +P+IT+K+IGHQWYW+YEYSD+N+ +     FDSYMIP ++L     RLL V
Sbjct:    7 LGLQDSASPLME-----QLIFFHDHALLILVMITVLVGYLMFMLFFNSYVNRFLLHGQLIEMIWTILPAIILLFIAMPSLRLLYLLDEIN-EPSITLKSIGHQWYWSYEYSDFNNVE-----FDSYMIPTNELSNDGFRLLDV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_DROPE (Cytochrome c oxidase subunit 2 OS=Drosophila persimilis GN=mt:CoII PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.920e-23
Identity = 59/143 (41.26%), Postives = 86/143 (60.14%), Query Frame = 3
Query:  231 LGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            LG QD+A+P+M+                        V  L    +  + + + ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE+  +P+IT+K+IGHQWYW+YEYSD+N+ +     FDSYMIP ++L     RLL V
Sbjct:    7 LGLQDSASPLME-----QLIFFHDHALLILVMITVLVGYLMFMLFFNSYVNRFLLHGQLIEMIWTILPAIILLFIAMPSLRLLYLLDEIN-EPSITLKSIGHQWYWSYEYSDFNNVE-----FDSYMIPTNELSNDGFRLLDV 138          
The following BLAST results are available for this feature:
BLAST of DN135279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
COX2_EQUAS1.311e-2339.22Cytochrome c oxidase subunit 2 OS=Equus asinus GN=... [more]
COX2_AEDAE1.311e-2360.00Cytochrome c oxidase subunit 2 OS=Aedes aegypti GN... [more]
COX2_DUGDU1.712e-2339.74Cytochrome c oxidase subunit 2 OS=Dugong dugon GN=... [more]
COX2_DIDMA1.712e-2339.74Cytochrome c oxidase subunit 2 OS=Didelphis marsup... [more]
COX2_DANRE1.712e-2341.78Cytochrome c oxidase subunit 2 OS=Danio rerio GN=m... [more]
COX2_PIG2.920e-2339.87Cytochrome c oxidase subunit 2 OS=Sus scrofa GN=MT... [more]
COX2_MACRO2.920e-2340.40Cytochrome c oxidase subunit 2 OS=Macropus robustu... [more]
COX2_DROSU2.920e-2340.56Cytochrome c oxidase subunit 2 OS=Drosophila subob... [more]
COX2_DROPS2.920e-2341.26Cytochrome c oxidase subunit 2 OS=Drosophila pseud... [more]
COX2_DROPE2.920e-2341.26Cytochrome c oxidase subunit 2 OS=Drosophila persi... [more]

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Properties
Property NameValue
Genbank descriptionwca08h12 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135279 ID=DN135279; Name=DN135279; organism=Citrus sinensis; type=EST; length=660bp
CCGGGGGCAAGNNAAGCTGACTGAGTGTTCATTAATGCCCAAAACTCCCT
NGCCTTTCTTGGTTGGACCAAGGCGATTTCTGTCTTCCTGATTTGGGATA
GTAAGAGTCAGTCTCTCTTTTTTGGGGGGGAGCAGAGCAGTCAAAGAATG
AAGCAAAGCAAATGATTGTTCGTTTACTAGAATGGTTATTCCTTACAATT
GCTCCTTGTGATGCAGCGGAACCGTGGCAATTAGGATTTCAAGACGCAGC
AACACCTATGATGCAAGGAATAATAGACTTACATCACGATATCTTCTTCT
TTCTCATTCTGATTTTGGTTTTCGTATTATGGATCTTGGTTCGTGCTTTA
TGGCATTTCCATTATAAAAAAAATCCAATCCCGCAAAGGATTGTTCATGG
AACTACTATCGAGATTCTTTGGACCATCTTTCCTAGTATCATCTTGATGT
TCATTGCTATACCATCATTTGCTCTGTTATACTCAATGGACGAGGTAGTA
GTAGATCCAGCCATCACTATCAAAGCTATTGGGCATCAATGGTATTGGAC
TTATGAGTATTCAGACTATAACAGTTCCGATGAACAGTCACTCATTTTTG
ACAGTTATATGATTCCAGAGGATGATCTAGAATTGGGTCAATTACGTTTA
TTANNNGTGG
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