DN135275

Overview
NameDN135275
Unique NameDN135275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN135275_ssr626 microsatellite DN135275_ssr626:626..643. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:246..930. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135275 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.022e-46
Identity = 93/148 (62.84%), Postives = 112/148 (75.68%), Query Frame = 3
Query:  108 RRTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 551
            RR+NVFDPF+ D WDPFDG   S +    +S R+T+ FANAR+DWKETP++HVFKADLPG++          G +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKASMENGVLTVT            AIEISG
Sbjct:    5 RRSNVFDPFA-DFWDPFDGVFRSLVP--ATSDRDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPEVKAIEISG 149          
BLAST of DN135275 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.640e-46
Identity = 95/145 (65.52%), Postives = 116/145 (80.00%), Query Frame = 3
Query:   78 MSLIPSIF--GGRRTNVFDPFSLD-VWDPFDGFLSSALTNAPSS--ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 497
            MSLIP+ +   GRR+N+FDPFSLD +WDPF G L S L+  P S  A ET+ FANARIDWKETP+AHVFKADLPG++          G +L+ISG+R++E+EEKND WHRVERSSG+F+R+FRLP+NAKV+QVKA MENGVLTVT
Sbjct:    1 MSLIPNNWFNTGRRSNIFDPFSLDEIWDPFFG-LPSTLSTVPRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVLTVT 144          
BLAST of DN135275 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.003e-45
Identity = 94/155 (60.65%), Postives = 109/155 (70.32%), Query Frame = 3
Query:  108 RRTNVFDPFSLDVWDPFDGF-------LSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 551
            RR N FDPFSLD+WDP DGF        SS+ +  P +  + + FA ARIDWKETP+ HVFKAD+PGL+          G ILQISGERS+EQEEK+DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT            +I+ISG
Sbjct:    5 RRGNAFDPFSLDLWDPVDGFPFGSGGSSSSSGSLFPRANSDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQISG 159          
BLAST of DN135275 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.310e-45
Identity = 97/161 (60.25%), Postives = 118/161 (73.29%), Query Frame = 3
Query:   78 MSLIPSIFGGRRTN-VFDPFSLDVWDPFD--GFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 551
            MSLIP IFG RR++ +FDPFS+DV+DPF   GF S+       ++ E+S FAN RIDWKETP+ HVFK DLPGL+           R+LQISGER+ E+E+KNDKWHR+ERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT            +IEISG
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPST-------NSGESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVKKPEVKSIEISG 154          
BLAST of DN135275 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.813e-45
Identity = 92/159 (57.86%), Postives = 112/159 (70.44%), Query Frame = 3
Query:   78 MSLIPSIFGG-RRTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 551
            MS+IPS F   RR+N+FDPFSLDVWDPF    SS+L+      RE S   NAR+DW+ETP+AHVFKADLPGL+            +L+ISGER  E+E+KND WHRVERSSG+F RRFRLP+N K++QVKA+MENGVLTVT            +I+ISG
Sbjct:    1 MSMIPSFFNNNRRSNIFDPFSLDVWDPFKELTSSSLS------RENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKAETKKADVKSIQISG 153          
BLAST of DN135275 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.661e-43
Identity = 90/149 (60.40%), Postives = 110/149 (73.83%), Query Frame = 3
Query:  108 RRTNVFDPFSLDVW-DPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 551
            RR+NVFDPF+ D+W DPFD F S     +  S+ ET+ FANAR+DWKETP+AHVFK DLPG++          G +L +SGERS+E+E+KNDKWHRVERSSGKF+RRFRLP++AKVE+VKA +ENGVLTVT            AIEISG
Sbjct:    5 RRSNVFDPFA-DLWADPFDTFRSIVPAISGGSS-ETAAFANARVDWKETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 151          
BLAST of DN135275 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.356e-42
Identity = 86/142 (60.56%), Postives = 105/142 (73.94%), Query Frame = 3
Query:  126 DPFSLDVWDPFDGF-LSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEIS 548
            DPFSLDVWDPF  F  +++  +A S  +E S F + RIDWKETP+AHVFKADLPGL+           R+LQISGER+ E+E+KND+WHRVERSSGKF+RRFRLP+NAK++QVKA+MENGVLTVT            +IEIS
Sbjct:    1 DPFSLDVWDPFKDFPFTNSALSASSFPQENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEIKKPEVKSIEIS 142          
BLAST of DN135275 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.946e-42
Identity = 89/149 (59.73%), Postives = 108/149 (72.48%), Query Frame = 3
Query:  108 RRTNVFDPFSLDVW-DPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 551
            RRTNVFDPF+ D+W DPFD F  S +        ET+ FANAR+DWKETP+AHVFKADLPG++          G +L +SGER+KE+E+KNDKWHRVERSSGKF+RRFRL ++AKVE+VKA +ENGVLTVT            AI+ISG
Sbjct:    5 RRTNVFDPFA-DLWADPFDTF-RSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151          
BLAST of DN135275 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.718e-41
Identity = 85/142 (59.86%), Postives = 101/142 (71.13%), Query Frame = 3
Query:   78 MSLIPSIFGGRR--TNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 497
            MSLIPS FG  R   ++FDPFSLDVWDPF       L    S + ETS   NAR+DWKET +AHVFKADLPG++            +L+ISGER  E+EEK D WHRVERSSG+F R+F+LP+N K++QVKASMENGVLTVT
Sbjct:    1 MSLIPSFFGNNRRSNSIFDPFSLDVWDPF-----KELQFPSSLSGETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVLTVT 137          
BLAST of DN135275 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.658e-40
Identity = 87/143 (60.84%), Postives = 101/143 (70.63%), Query Frame = 3
Query:   78 MSLIPSIFGGRR---TNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 497
            MSLIPS FG  R    N+FDPFSLDVWDPF           PSS+  +S  ANAR+DWKET +AHVFKADLPG++            +L+ISGER  E+EEK D WHRVERSSG F R+FRLP+N K++QVKASMENGVLTVT
Sbjct:    1 MSLIPSFFGNNRRINNNIFDPFSLDVWDPFKEL------QFPSSS--SSAIANARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVLTVT 135          
The following BLAST results are available for this feature:
BLAST of DN135275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS16C_ORYSJ2.022e-4662.8416.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HSP11_CHERU2.640e-4665.5218.3 kDa class I heat shock protein OS=Chenopodium... [more]
HS177_ORYSJ1.003e-4560.6517.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_SOLLC1.310e-4560.2517.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HS17B_ARATH3.813e-4557.8617.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HS16A_WHEAT4.661e-4360.4016.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HSP11_MEDSA1.356e-4260.5618.1 kDa class I heat shock protein (Fragment) OS=... [more]
HS16B_WHEAT3.946e-4259.7316.9 kDa class I heat shock protein 2 OS=Triticum ... [more]
HS178_ARATH9.718e-4159.8617.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17A_ARATH1.658e-4060.8417.6 kDa class I heat shock protein 1 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionwca08h08 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135275 ID=DN135275; Name=DN135275; organism=Citrus sinensis; type=EST; length=684bp
CGGCCGGGATCTTCGAATTGATTGATCAAACACTTCTGAAGTTGTTGAGC
ATTTAATTAGCGCCCCAGTTTGCCATAATGTCACTCATTCCAAGCATCTT
CGGTGGCCGAAGAACCAACGTGTTCGATCCATTTTCATTAGATGTATGGG
ATCCTTTCGACGGGTTCTTGTCCTCTGCCCTTACCAACGCGCCGTCTTCG
GCTAGGGAAACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAGAGAC
TCCTCAGGCTCATGTATTCAAGGCTGATCTTCCAGGGCTGAGGAAAGAAG
AAGTGAAAGTTGAGGTTGAAGAGGGCAGGATTCTGCAGATAAGCGGGGAG
AGGAGCAAGGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCGAGAG
GAGCAGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGCTAAGG
TGGAGCAGGTTAAGGCCAGCATGGAGAATGGTGTGCTCACAGTGACCGTT
CCTAAACAGGAGGAGAAGAAACCTGAAGTTAAGGCCATTGAGATCTCTGG
CTAAGTGATAAGTGTAAATGTTTTCAAGATTGTGTCTTTGGTTTGCTAAT
AAATTTGGTACGAAAGCAAAGCCCTTGTGTGTGTGTGTGTGTGCTTGCAA
GAGCTTCCCTTCCCCCCCTGTTTAATTCGATGTG
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