DN135275

Overview
NameDN135275
Unique NameDN135275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN135275_ssr626 microsatellite DN135275_ssr626:626..643. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:246..930. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135275 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  237 DWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 497
            D KE P A+ F  D+PGL            R+L ISGER +E+ E + K+ R+ER  GKF+R+F LPDNA ++++ A   +GVLTVT
Sbjct:   56 DVKELPGAYAFVVDMPGLGTGDIKVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVLTVT 141          
BLAST of DN135275 vs. ExPASy Swiss-Prot
Match: HS177_ARATH (17.7 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = 3
Query:  186 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 497
            N PS A  R+    A    D  E P A+VF  D+PG++            +L +SG+R ++ +E    K+ R+ER  GKF+R+F+LPDNA +E++ A+  +GVL VT
Sbjct:   30 NNPSRAYMRDAKAMAATPADVIEHPDAYVFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGKFMRKFQLPDNADLEKISAACNDGVLKVT 136          
BLAST of DN135275 vs. ExPASy Swiss-Prot
Match: HS178_ORYSJ (17.8 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.8 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.564e-13
Identity = 43/111 (38.74%), Postives = 63/111 (56.76%), Query Frame = 3
Query:  222 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQI--------------SGERSKEQEEKND--KWHRVERSSGK---FLRRFRLPDNAKVEQVKASMENGVLTVT 497
            A   +DW+ETP AHVF+ DLPGL           G IL++              +G+ S E+EE+ND  +WH  ER++G+    + +FRLP++A  ++  A M +GVLTVT
Sbjct:   25 ARPPMDWRETPVAHVFEMDLPGLAKDQVAVEVVDGHILRVRAGGEHEDANNAAKAGKASGEEEEENDGVRWHCRERAAGRRRAAVTQFRLPEDAAADEASARMADGVLTVT 135          
BLAST of DN135275 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.462e-12
Identity = 44/119 (36.97%), Postives = 59/119 (49.58%), Query Frame = 3
Query:  156 FDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGER-----SKEQE-EKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 494
            F G     L   P      S  A A +DW ETP +HV + ++PGL           G +L + G        KE+E EK+  WH  ER   +F R   LP   +VEQ++AS++NGVLTV
Sbjct:    6 FGGPFRRILYGRPFPPDWASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVLTV 124          
BLAST of DN135275 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 39/107 (36.45%), Postives = 59/107 (55.14%), Query Frame = 3
Query:  186 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 497
            N PS    R+    A    D  E P A+ F  D+PG++            +L +SGER +E +E    K+ R+ER  GKF+R+F+LP+NA ++++ A   +GVL VT
Sbjct:   29 NNPSRVYMRDAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVT 135          
The following BLAST results are available for this feature:
BLAST of DN135275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP21_MAIZE5.026e-1345.9817.5 kDa class II heat shock protein OS=Zea mays P... [more]
HS177_ARATH5.026e-1338.3217.7 kDa class II heat shock protein OS=Arabidopsi... [more]
HS178_ORYSJ6.564e-1338.7417.8 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP16_ORYSJ1.462e-1236.9716.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]
HS176_ARATH7.257e-1236.4517.6 kDa class II heat shock protein OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionwca08h08 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135275 ID=DN135275; Name=DN135275; organism=Citrus sinensis; type=EST; length=684bp
CGGCCGGGATCTTCGAATTGATTGATCAAACACTTCTGAAGTTGTTGAGC
ATTTAATTAGCGCCCCAGTTTGCCATAATGTCACTCATTCCAAGCATCTT
CGGTGGCCGAAGAACCAACGTGTTCGATCCATTTTCATTAGATGTATGGG
ATCCTTTCGACGGGTTCTTGTCCTCTGCCCTTACCAACGCGCCGTCTTCG
GCTAGGGAAACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAGAGAC
TCCTCAGGCTCATGTATTCAAGGCTGATCTTCCAGGGCTGAGGAAAGAAG
AAGTGAAAGTTGAGGTTGAAGAGGGCAGGATTCTGCAGATAAGCGGGGAG
AGGAGCAAGGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCGAGAG
GAGCAGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGCTAAGG
TGGAGCAGGTTAAGGCCAGCATGGAGAATGGTGTGCTCACAGTGACCGTT
CCTAAACAGGAGGAGAAGAAACCTGAAGTTAAGGCCATTGAGATCTCTGG
CTAAGTGATAAGTGTAAATGTTTTCAAGATTGTGTCTTTGGTTTGCTAAT
AAATTTGGTACGAAAGCAAAGCCCTTGTGTGTGTGTGTGTGTGCTTGCAA
GAGCTTCCCTTCCCCCCCTGTTTAATTCGATGTG
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