DN135274

Overview
NameDN135274
Unique NameDN135274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13572 contig Csv1_Contig13572:1203..1903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYTC2_HUMAN (Probable threonyl-tRNA synthetase 2, cytoplasmic OS=Homo sapiens GN=TARSL2 PE=1 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 1.725e-80
Identity = 138/225 (61.33%), Postives = 172/225 (76.44%), Query Frame = 2
Query:   26 RSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            RS+RE+P+R ADFGVLHRNE SG L+GLTRVRRFQQDDAHIFC   QI++E++G L+F+   Y  FGF+++L LSTRPE +LG++  W +AE  L  +L +FG+PW++N GDGAFYGPKIDI + DA+ R  QCAT+QLDFQLP RFNL Y ++D    +RPV+IHRAILGSVERM AIL E+Y GKWPFWLSPRQ +V PV    + YALQV    +  G+  D
Sbjct:  504 RSWREMPIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTVEQIEEEIKGCLQFLQSVYSTFGFSFQLNLSTRPENFLGEIEMWNEAEKQLQNSLMDFGEPWKMNPGDGAFYGPKIDIKIKDAIGRYHQCATIQLDFQLPIRFNLTYVSKDGDDKKRPVIIHRAILGSVERMIAILSENYGGKWPFWLSPRQVMVIPVGPTCEKYALQVSSEFFEEGFMAD 728          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYTC2_MOUSE (Probable threonyl-tRNA synthetase 2, cytoplasmic OS=Mus musculus GN=Tarsl2 PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 3.842e-80
Identity = 140/225 (62.22%), Postives = 170/225 (75.56%), Query Frame = 2
Query:   26 RSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            RS+RE+P+R ADFGVLHRNE SG L+GLTRVRRFQQDDAHIFC   QI++E++G L F+   Y  FGF+++L LSTRPE +LG++  W++AE  L  +L EFGKPW+IN GDGAFYGPKIDI + DA+ R  QCAT+QLDFQLP RFNL Y ++D     RPV+IHRAILGSVERM AIL E+Y GKWP WLSPRQ +V PV    + YALQV    +  G+  D
Sbjct:  492 RSWREMPVRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCMVEQIEEEIKGCLHFLQSVYSTFGFSFQLNLSTRPEHFLGEIEIWDEAERQLQNSLVEFGKPWKINPGDGAFYGPKIDIKIKDAIGRYHQCATIQLDFQLPIRFNLTYVSKDGDDKNRPVIIHRAILGSVERMIAILSENYGGKWPLWLSPRQVMVIPVGPACENYALQVSKECFEEGFMAD 716          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYTC_SCHPO (Threonyl-tRNA synthetase, cytoplasmic OS=Schizosaccharomyces pombe GN=ths1 PE=2 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 1.907e-79
Identity = 147/236 (62.29%), Postives = 175/236 (74.15%), Query Frame = 2
Query:   26 RSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRP-EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEA----------KTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            RSYR+LP R+ADFGVLHRNE SGAL+GLTRVRRFQQDDAHIFC   Q++ E+ G  +F+   Y  FGFT+ L+LSTRP EKYLGDLATW+KAEA L  AL+  G  W++N GDGAFYGPKIDI+V DALKR+ QCAT+QLDFQLP+RF L + A   A          K  RPVM+HRAILGS+ERM AIL EHY GKWPFW+SPRQ  + PVS  +  YA +V + +  A  +VD
Sbjct:  393 RSYRDLPWRVADFGVLHRNEFSGALSGLTRVRRFQQDDAHIFCTPDQVRSEIEGCFDFLKEVYGTFGFTFHLELSTRPEEKYLGDLATWDKAEAQLKAALDASGYKWELNAGDGAFYGPKIDITVFDALKRQHQCATIQLDFQLPERFQLEFHAPASAEEAKESGNNNKYTRPVMVHRAILGSLERMIAILTEHYAGKWPFWMSPRQVCIIPVSAAAYNYADKVHNILSEADIFVD 628          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYTC2_BOVIN (Probable threonyl-tRNA synthetase 2, cytoplasmic OS=Bos taurus GN=TARSL2 PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.367e-77
Identity = 135/212 (63.68%), Postives = 167/212 (78.77%), Query Frame = 2
Query:   26 RSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQ 661
            RS+RE+P+RLADFGVLHRNE SGAL+GLT VRRFQQDDAHIFC   Q+++E++G L+F+   Y  FGF+++L LSTRPE +LG +  W++AE  L  +L EFGKPW+IN G+GAFYGPKID+ + DAL R  QCAT+QLDFQLP RFNL Y ++D    + PV+IH+AILGSVERM AIL E+Y GKWPFWLSPRQ +V PV    + YALQ
Sbjct:  502 RSWREMPIRLADFGVLHRNEPSGALSGLTCVRRFQQDDAHIFCTVGQLEEEIKGCLQFLQSVYSTFGFSFQLNLSTRPENFLGKIELWDEAEKQLQNSLMEFGKPWKINPGEGAFYGPKIDLEIKDALGRYHQCATIQLDFQLPIRFNLTYVSKDGDDKKNPVIIHQAILGSVERMIAILSENYGGKWPFWLSPRQVMVIPVGPTCEKYALQ 713          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYTC2_DICDI (Probable threonyl-tRNA synthetase 2, cytoplasmic OS=Dictyostelium discoideum GN=thrS2 PE=3 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.045e-77
Identity = 142/246 (57.72%), Postives = 172/246 (69.92%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEF-GKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSA------------------EDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            + RSY+ELP+R+ADFGVLHRNE  G+L+GLTRVRRFQQDDAHIFC    I++E++  L+F+ Y Y IF FT+ L+LSTRP+ YLG+L+ WEKAE +L++ L EF G  W IN GDGAFYGPKIDI + DA  +  QCAT+QLDFQLP RFNL YS                    +     RPVMIHRA+ GSVERM AIL+EH  GKWPFWLSPRQ IV PVS     +A +++  I  AGY VD
Sbjct:  383 RARSYKELPMRIADFGVLHRNETHGSLSGLTRVRRFQQDDAHIFCTPDMIREEIKQCLDFMKYVYTIFNFTFHLELSTRPDSYLGELSVWEKAETSLSQVLTEFCGDKWTINHGDGAFYGPKIDIHLKDANGKNHQCATIQLDFQLPIRFNLEYSGGLNNNNNNNNNNEEINDNNNNNSLNRPVMIHRALFGSVERMMAILMEHTAGKWPFWLSPRQCIVIPVSNKFNQFAQEIQSKINLAGYDVD 628          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYTC_ENCCU (Probable threonyl-tRNA synthetase, cytoplasmic OS=Encephalitozoon cuniculi GN=ECU07_1570 PE=3 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.729e-72
Identity = 131/218 (60.09%), Postives = 168/218 (77.06%), Query Frame = 2
Query:   29 SYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYR 682
            S+R+LPLRLADFGVLHRNE SG LTGLTRVRRFQQDDAHIFC + Q+K+E++G LEF+ + Y +FGF +EL LSTRPEKYLG +  W++AE AL +A++E   P++IN GDGAFYGPKIDI++ DAL R+ QCAT+QLDFQLP RF L Y  + + +   PV+IHRAILGS+ERM AI+LE +  + PFW+SPRQ  +  V+  +  Y  +VR  + R
Sbjct:  343 SFRDLPLRLADFGVLHRNELSGTLTGLTRVRRFQQDDAHIFCTKDQVKEEIKGCLEFLSFVYGVFGFRFELVLSTRPEKYLGSVDEWDRAEKALADAMDESNMPFKINAGDGAFYGPKIDITLHDALGRRIQCATIQLDFQLPQRFELKY-RDSDGQCRTPVIIHRAILGSIERMIAIILESFGKRLPFWISPRQIAI--VNMGNPDYVGKVRSVLAR 557          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYTM_HUMAN (Threonyl-tRNA synthetase, mitochondrial OS=Homo sapiens GN=TARS2 PE=1 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.708e-70
Identity = 127/225 (56.44%), Postives = 158/225 (70.22%), Query Frame = 2
Query:   26 RSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            RS+RELPLRLADFG LHR EASG L GLTR+R FQQDDAHIFC   Q++ E++  L+F+   Y + GF++ L LSTRP  +LGD   W++AE  L +AL EFG+PW +N GDGAFYGPKID+ + DAL R  QC T+QLDFQLP RF+L Y  +  A  ERPV+IHRA+LGSVER+  +L E   GKWP WLSP Q +V PV    + YA + +  +  AG   D
Sbjct:  421 RSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTTDQLEAEIQSCLDFLRSVYAVLGFSFRLALSTRPSGFLGDPCLWDQAEQVLKQALKEFGEPWDLNSGDGAFYGPKIDVHLHDALGRPHQCGTIQLDFQLPLRFDLQYKGQAGA-LERPVLIHRAVLGSVERLLGVLAESCGGKWPLWLSPFQVVVIPVGSEQEEYAKEAQQSLRAAGLVSD 644          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYTM_RAT (Threonyl-tRNA synthetase, mitochondrial OS=Rattus norvegicus GN=Tars2 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.149e-70
Identity = 129/225 (57.33%), Postives = 161/225 (71.56%), Query Frame = 2
Query:   26 RSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            RS+RELP+RLADFGVLHR EASG+L GLTR+ RFQQDDAHIFC  SQ++ E+RG L+F+   Y + GF++ L LSTRP  +LG+   W++AE  L +AL EFG+PW +N GDGAFYGPKID+ + DAL R  QC T+QLDFQLP RF+L Y     A  E PV+IHRA+LGSVER+  +L E   G+WP WLSP Q +V PV    + YA QV+  +  AG   D
Sbjct:  426 RSWRELPVRLADFGVLHRAEASGSLGGLTRLWRFQQDDAHIFCAPSQLEAEIRGCLDFLRSVYSVLGFSFHLALSTRPPGFLGEPHLWDQAEKVLQQALEEFGEPWNLNPGDGAFYGPKIDVHLHDALGRPHQCGTIQLDFQLPLRFDLQYKGPAGA-PECPVLIHRAVLGSVERLLGVLAESCGGRWPLWLSPFQVVVIPVRTEQEDYARQVQQCLQAAGLVSD 649          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYTM_MOUSE (Threonyl-tRNA synthetase, mitochondrial OS=Mus musculus GN=Tars2 PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.583e-68
Identity = 125/225 (55.56%), Postives = 158/225 (70.22%), Query Frame = 2
Query:   26 RSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            RS+RELP+RLADFG LHR EASG+L GLTR+ RFQQDDAHIFC   Q++ E++G L+F+   Y + GF++ L LSTRP  +LG+   W++AE  L +AL +FG+PW +N GDGAFYGPKID+ + DAL R  QC T+QLDFQLP RF+L Y        E PV+IHRA+LGSVER+  +L E   GKWP WLSP Q +V PV    + YA QV+  +  AG   D
Sbjct:  426 RSWRELPVRLADFGALHRAEASGSLGGLTRLWRFQQDDAHIFCAPHQLEAEIQGCLDFLRCVYSVLGFSFHLALSTRPPGFLGEPRLWDQAEQVLQQALEKFGEPWDLNPGDGAFYGPKIDVHLHDALGRPHQCGTIQLDFQLPLRFDLQYKG-PAGTPECPVLIHRAVLGSVERLLGVLAESCGGKWPLWLSPLQVVVIPVRTEQEEYARQVQQCLQAAGLVSD 649          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_PELPD (Threonyl-tRNA synthetase OS=Pelobacter propionicus (strain DSM 2379) GN=thrS PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.187e-67
Identity = 123/225 (54.67%), Postives = 160/225 (71.11%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYV 697
            +RSYR+LPLR  + G +HR+E +G L GL RVR F QDDAHI C   Q+  E++GVL+F+     IFGF YE++LSTRPEK +GD A WE A  AL  AL + G+ ++INEGDGAFYGPKIDI + DAL R++QCAT+Q DF LP+RF+L Y A D  K +RPVM+HR +LG++ER   +L+EHY G +P WLSP QA++  V+    PYA  V +H+  AG  V
Sbjct:  346 LRSYRDLPLRYFELGTVHRHERAGVLHGLLRVRGFTQDDAHILCAPEQLDGEIKGVLKFVSDVMAIFGFEYEMELSTRPEKSIGDDAAWELATEALLSALKDTGRSFEINEGDGAFYGPKIDIKLKDALDRRWQCATIQCDFTLPERFDLQYVAADGEK-KRPVMVHRVVLGAIERFIGVLIEHYAGNFPLWLSPVQAMLVTVTDNHIPYAQGVLEHLREAGIRV 569          
The following BLAST results are available for this feature:
BLAST of DN135274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYTC2_HUMAN1.725e-8061.33Probable threonyl-tRNA synthetase 2, cytoplasmic O... [more]
SYTC2_MOUSE3.842e-8062.22Probable threonyl-tRNA synthetase 2, cytoplasmic O... [more]
SYTC_SCHPO1.907e-7962.29Threonyl-tRNA synthetase, cytoplasmic OS=Schizosac... [more]
SYTC2_BOVIN1.367e-7763.68Probable threonyl-tRNA synthetase 2, cytoplasmic O... [more]
SYTC2_DICDI3.045e-7757.72Probable threonyl-tRNA synthetase 2, cytoplasmic O... [more]
SYTC_ENCCU1.729e-7260.09Probable threonyl-tRNA synthetase, cytoplasmic OS=... [more]
SYTM_HUMAN4.708e-7056.44Threonyl-tRNA synthetase, mitochondrial OS=Homo sa... [more]
SYTM_RAT6.149e-7057.33Threonyl-tRNA synthetase, mitochondrial OS=Rattus ... [more]
SYTM_MOUSE2.583e-6855.56Threonyl-tRNA synthetase, mitochondrial OS=Mus mus... [more]
SYT_PELPD2.187e-6754.67Threonyl-tRNA synthetase OS=Pelobacter propionicus... [more]

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Properties
Property NameValue
Genbank descriptionwca08h07 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135274 ID=DN135274; Name=DN135274; organism=Citrus sinensis; type=EST; length=701bp
TACGGCCGGGGTTTGNNNTAAGGTTCGTTCATACAGAGAACTACCTCTGC
GACTGGCTGATTTTGGGGTCTTGCATCGGAATGAAGCCAGTGGAGCACTC
ACTGGATTAACTCGTGTCAGGAGATTTCAGCAGGATGACGCTCATATTTT
CTGCAGGGAGTCCCAGATAAAAGACGAAGTAAGGGGTGTCCTAGAGTTCA
TTGATTATGCCTACAGAATATTCGGGTTCACATATGAGCTGAAGCTATCA
ACTAGGCCTGAAAAGTATCTTGGGGACTTGGCAACTTGGGAGAAAGCCGA
AGCTGCTCTTACAGAAGCATTGAATGAGTTTGGGAAGCCATGGCAGATAA
ATGAAGGGGATGGAGCATTTTATGGACCAAAGATTGATATCAGTGTATCT
GATGCATTGAAGAGGAAATTCCAGTGTGCTACTTTGCAGCTTGACTTTCA
GCTTCCTGATCGTTTCAACTTGGGTTACTCAGCGGAAGATGAAGCCAAGA
CAGAGAGACCTGTTATGATACACAGAGCGATATTGGGGTCTGTTGAACGT
ATGTTTGCTATACTGTTGGAACATTACAAGGGGAAGTGGCCTTTTTGGCT
CAGTCCACGTCAAGCAATTGTTTGCCCTGTGTCNNNGNAATCCCAACCAT
ATGCTTTACAGGTGCGGGATCATATTTATCGAGCCGGTTATTATGTTGAT
G
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