DN135274

Overview
NameDN135274
Unique NameDN135274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13572 contig Csv1_Contig13572:1203..1903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_GEOSL (Threonyl-tRNA synthetase OS=Geobacter sulfurreducens GN=thrS PE=3 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.085e-66
Identity = 121/226 (53.54%), Postives = 161/226 (71.24%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYV 697
            ++RSYR+LPLR  + G +HR+E +G L GL RVR F QDDAHI C   Q+  E++GV+ F++    IFGF YE++LSTRPEK +G    WE+A  AL  AL + G+P++INEGDGAFYGPKIDI + D+L RK+QCAT+Q DF LP+RF+L Y  + + + +RPVM+HR ILGS+ER   +L+EH+ G +P WLSP QAIV  V+   QPYA QV + +   G  V
Sbjct:  345 QLRSYRDLPLRFFELGTVHRHERAGVLHGLLRVRCFTQDDAHILCTPEQLDAEIKGVISFVNDVMGIFGFDYEMELSTRPEKSIGSDEDWERATGALLGALKDSGRPYEINEGDGAFYGPKIDIKLRDSLDRKWQCATIQCDFTLPERFDLTY-VDADGERKRPVMVHRVILGSIERFIGVLIEHFAGNFPLWLSPVQAIVLTVTDNQQPYAAQVFETLRTNGVRV 569          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT2_BACSU (Threonyl-tRNA synthetase 2 OS=Bacillus subtilis GN=thrZ PE=2 SV=2)

HSP 1 Score: 251.521 bits (641), Expect = 3.158e-66
Identity = 121/220 (55.00%), Postives = 156/220 (70.91%), Query Frame = 2
Query:   29 SYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAG 688
            SYR+LP+R+A+FG +HR+E SGAL G+ RVR F QDDAHIF RE QI+ E++  +  ID  YR FGF Y ++LSTRPE  LGD + WE +E AL   L E G  ++INEGDGAFYGPKID  + DALKR  QCAT+QLDFQ+P++F+L Y  E   K  RPV+IHRA+ GS++R F IL+EHY G +P WL+P Q  + PVS     Y  +V+  + +AG
Sbjct:  349 SYRDLPIRMAEFGQVHRHEYSGALNGMLRVRTFCQDDAHIFVREDQIESEIKEAIRLIDEVYRTFGFEYSVELSTRPEDSLGDDSLWEASERALARVLEELGLSYEINEGDGAFYGPKIDFHIKDALKRSHQCATIQLDFQMPEKFDLTYINELNEKV-RPVVIHRAVFGSIDRFFGILIEHYGGAFPVWLAPIQVQIIPVSHVHLDYCRKVQAELKQAG 567          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_SYMTH (Threonyl-tRNA synthetase OS=Symbiobacterium thermophilum GN=thrS PE=3 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.124e-66
Identity = 121/227 (53.30%), Postives = 162/227 (71.37%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            ++RSYR+LPL++A++G L R EASG L GL RVR F QDDAH+F R  QI++++R V+  +D  Y   G  YE+KLSTRPE ++GD+  W +AEAAL  AL+  G+ +++N GDGAFYGPK+D  V+DAL RK+QCAT+QLDFQLP +F+L Y  ED  K  RPVMIHRAI+G++ER   IL EHY G +P W++P QA V P++     YA +V   +  AG  V+
Sbjct:  346 QIRSYRDLPLKIAEYGPLSRFEASGTLHGLLRVRGFHQDDAHLFVRPDQIEEQIREVIGLVDTIYGTLGLEYEIKLSTRPEDFMGDIELWNEAEAALARALDGMGRSYKLNPGDGAFYGPKLDFDVTDALGRKWQCATVQLDFQLPIKFDLTYIGED-GKEHRPVMIHRAIMGTLERFIGILTEHYAGNFPLWMAPVQARVLPITDRHHAYAGEVVAKLQEAGLRVE 571          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYTM_SCHPO (Probable threonyl-tRNA synthetase, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC24C9.09 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.673e-65
Identity = 128/226 (56.64%), Postives = 155/226 (68.58%), Query Frame = 2
Query:   26 RSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGY--SAEDEAKTER----PVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQ--PYALQVRDHI 676
            RSY+ELPLR ADF  LHRNEASGAL+GLTR+R F QDD HIFC    IKDE++  L F+   Y + G    +L LSTRPE+++G L TW +AE  L EAL E G+ W INEGDGAFYGPKID+ V+DA  +  Q AT+QLDF LP RF L Y   A D A +E+    PVMIHRAI GS+ER   IL+EH  G WPFWLSPR A++ PV+   +   YA QV+  +
Sbjct:  158 RSYKELPLRFADFSPLHRNEASGALSGLTRLRCFHQDDGHIFCSPESIKDEIKNTLTFVKQVYSLLGMNKLKLYLSTRPEEHIGSLDTWNEAENGLREALQESGETWIINEGDGAFYGPKIDVMVADARGKWHQTATIQLDFNLPQRFKLYYRTDAGDNAGSEKLIKQPVMIHRAIFGSLERFMGILIEHLNGHWPFWLSPRHAVILPVNQTDRILTYAKQVQKEL 383          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_NITOC (Threonyl-tRNA synthetase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=thrS PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.560e-65
Identity = 121/225 (53.78%), Postives = 164/225 (72.89%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGY 691
            ++RSYRELP+R A+ G ++R+E SGAL GL RVR F QDDAHIFCRE QI++E+ G+L+        FGF  YE+ LSTRPEK +G  A WE+A  AL  AL++ G  + ++EG GAFYGPKIDI + DA+ RK+QC+T+QLDF LP+RF + Y AED A+  RP+MIHRA+LGS+ER F +L+EHY+GK+P WL+P Q +V  ++   + YA QV + +   G+
Sbjct:  345 RLRSYRELPIRWAELGTVYRHEMSGALHGLMRVRGFTQDDAHIFCREEQIENEILGILDLTLEMLAAFGFDRYEIDLSTRPEKSVGPEAIWEQATQALRSALDKKGLDYAVDEGGGAFYGPKIDIKIEDAIGRKWQCSTVQLDFNLPERFAMEYVAEDGAR-HRPIMIHRAVLGSLERFFGVLIEHYEGKFPPWLAPVQVVVMSITDRQEGYARQVEEAMRNKGF 568          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_CARHZ (Threonyl-tRNA synthetase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=thrS PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 7.778e-65
Identity = 120/227 (52.86%), Postives = 154/227 (67.84%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            K+ SYRE P+RLA+ G++HR+E SG L GL RVR F QDDAHIF    Q+KDE+ GV+  ID  YR+FGF Y ++LSTRPE  +G    WE A  +L EAL E G P++INEGDGAFYGPKID  + D L R +QC T+QLDFQ+P++F+L Y  ED  K  RPVMIHR + GS+ER   IL+EHY G +P WLSP Q  V  V+   + Y  ++   ++  G  V+
Sbjct:  343 KLHSYREFPIRLAELGLVHRHELSGVLHGLMRVRCFTQDDAHIFMLPEQVKDEIIGVINLIDEFYRLFGFEYHVELSTRPENSMGSDELWELATNSLKEALEERGLPYKINEGDGAFYGPKIDFHLKDCLGRTWQCGTIQLDFQMPEKFDLTYIGEDGQK-HRPVMIHRVVFGSIERFIGILIEHYAGAFPVWLSPVQVRVITVAERHREYGQEIYQKLFNQGVRVE 568          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_NAUPA (Threonyl-tRNA synthetase OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=thrS PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.016e-64
Identity = 120/222 (54.05%), Postives = 160/222 (72.07%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRA 685
            KVRSY+ELPLRL +FG +HR+E SG L GL RVR F QDDAHIFCR  QI++EV  VLEF+D     FGF YE+++STRPEK +G    WEKA  +L +ALN   + + I+EG GAFYGPKIDI ++DA+ RK+QC T+Q+DF LP+RF++ Y  E+  +  RPVMIHRAI+GS ER  AIL EHY G++P +++P +AI  P++     YA +++  +  A
Sbjct:  320 KVRSYKELPLRLFEFGTVHRHEKSGVLHGLLRVREFTQDDAHIFCRPDQIEEEVIKVLEFVDSIMERFGFNYEMEISTRPEKSIGSDEIWEKATESLKKALNSLNREYGIDEGGGAFYGPKIDIKITDAIGRKWQCGTIQVDFNLPERFDITYVDENNERV-RPVMIHRAIIGSFERFIAILTEHYAGEFPTFIAPIKAIFVPIAESHVEYAKKLQKELLEA 540          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_PELCD (Threonyl-tRNA synthetase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=thrS PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.327e-64
Identity = 120/224 (53.57%), Postives = 153/224 (68.30%), Query Frame = 2
Query:   26 RSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYV 697
            RSYR+LPLR  + G +HR+E SG L GL RVR F QDDAHI C   Q+ +E++ VLEF+     IFGF YE+++STRPEK +G  A WE+A  AL  AL +   P  +NEGDGAFYGPKIDI + DAL R++QCAT+Q DF LP+RF+L Y  +D  K  RPVM+HR ILG++ER   +L+EHY G +P WL+P QA+V  V+     YA  V D +  AG  V
Sbjct:  349 RSYRDLPLRYFELGTVHRHEKSGVLHGLLRVRGFTQDDAHIICTPDQLDEEIKRVLEFVRDVMAIFGFEYEIEISTRPEKSIGSDADWERATGALMNALKDLELPHDVNEGDGAFYGPKIDIKLKDALDRRWQCATIQCDFTLPERFDLTYVGKDGEK-HRPVMLHRVILGAIERFIGVLIEHYAGNFPLWLAPVQAVVINVTDNQADYAKSVSDALRAAGVRV 571          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_FINM2 (Threonyl-tRNA synthetase OS=Finegoldia magna (strain ATCC 29328) GN=thrS PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.327e-64
Identity = 119/226 (52.65%), Postives = 158/226 (69.91%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYV 697
            ++ SYRELP+++A+ G +HR+E SGAL GL RVR F QDDAH+FC   QI++EV   ++F DY Y  FGF YE++LSTRPE  +G    W+ A ++L  AL   G P++INEGDGAFYGPKID  + DA+ R +QC T+QLDFQ+P+RF++ Y A D +K +RP MIHRAILGS ER   IL+EHY GK+P WLSP Q  + P+S     YA +++  +   G  V
Sbjct:  343 ELHSYRELPIKVAELGQVHRHELSGALHGLFRVRTFVQDDAHVFCLPEQIEEEVSKTIDFCDYIYSKFGFKYEVELSTRPEDSMGSDEDWDLAISSLKNALEHKGLPYKINEGDGAFYGPKIDFHLEDAIGRTWQCGTIQLDFQMPERFDMTYIASDGSK-KRPAMIHRAILGSEERFMGILIEHYAGKFPLWLSPVQVEILPISDKFNDYAYELQQKMKARGLRV 567          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_PARUW (Threonyl-tRNA synthetase OS=Protochlamydia amoebophila (strain UWE25) GN=thrS PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.733e-64
Identity = 123/225 (54.67%), Postives = 155/225 (68.89%), Query Frame = 2
Query:   29 SYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEK-YLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            SYRELPLR+A+ G +HR E SG+L+GL RVR F QDDAHIF + S I+ E+ GVL   D  Y  FG +Y L+LSTRPEK  +G    WE A A L  AL+E GK ++INEGDGAFYGPKID  + DA+ R +QC T+QLD  LP++F L Y+  D  + +RPVMIHRAI GS+ER F IL+EHY GK+P WLSP Q     V+   +PYA ++      AG++VD
Sbjct:  350 SYRELPLRIAEIGNVHRYEPSGSLSGLFRVRSFHQDDAHIFMKPSDIQQEILGVLALADEIYSTFGLSYRLELSTRPEKNTIGTDHEWEVATAGLKGALDEMGKEYRINEGDGAFYGPKIDFHIRDAINRSWQCGTIQLDMALPEKFELEYTFSDGTR-QRPVMIHRAIFGSIERFFGILIEHYVGKFPLWLSPSQIRFITVADRHEPYARELAKRFKNAGFHVD 573          
The following BLAST results are available for this feature:
BLAST of DN135274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_GEOSL1.085e-6653.54Threonyl-tRNA synthetase OS=Geobacter sulfurreduce... [more]
SYT2_BACSU3.158e-6655.00Threonyl-tRNA synthetase 2 OS=Bacillus subtilis GN... [more]
SYT_SYMTH4.124e-6653.30Threonyl-tRNA synthetase OS=Symbiobacterium thermo... [more]
SYTM_SCHPO2.673e-6556.64Probable threonyl-tRNA synthetase, mitochondrial O... [more]
SYT_NITOC4.560e-6553.78Threonyl-tRNA synthetase OS=Nitrosococcus oceani (... [more]
SYT_CARHZ7.778e-6552.86Threonyl-tRNA synthetase OS=Carboxydothermus hydro... [more]
SYT_NAUPA1.016e-6454.05Threonyl-tRNA synthetase OS=Nautilia profundicola ... [more]
SYT_PELCD1.327e-6453.57Threonyl-tRNA synthetase OS=Pelobacter carbinolicu... [more]
SYT_FINM21.327e-6452.65Threonyl-tRNA synthetase OS=Finegoldia magna (stra... [more]
SYT_PARUW1.733e-6454.67Threonyl-tRNA synthetase OS=Protochlamydia amoebop... [more]

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Properties
Property NameValue
Genbank descriptionwca08h07 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135274 ID=DN135274; Name=DN135274; organism=Citrus sinensis; type=EST; length=701bp
TACGGCCGGGGTTTGNNNTAAGGTTCGTTCATACAGAGAACTACCTCTGC
GACTGGCTGATTTTGGGGTCTTGCATCGGAATGAAGCCAGTGGAGCACTC
ACTGGATTAACTCGTGTCAGGAGATTTCAGCAGGATGACGCTCATATTTT
CTGCAGGGAGTCCCAGATAAAAGACGAAGTAAGGGGTGTCCTAGAGTTCA
TTGATTATGCCTACAGAATATTCGGGTTCACATATGAGCTGAAGCTATCA
ACTAGGCCTGAAAAGTATCTTGGGGACTTGGCAACTTGGGAGAAAGCCGA
AGCTGCTCTTACAGAAGCATTGAATGAGTTTGGGAAGCCATGGCAGATAA
ATGAAGGGGATGGAGCATTTTATGGACCAAAGATTGATATCAGTGTATCT
GATGCATTGAAGAGGAAATTCCAGTGTGCTACTTTGCAGCTTGACTTTCA
GCTTCCTGATCGTTTCAACTTGGGTTACTCAGCGGAAGATGAAGCCAAGA
CAGAGAGACCTGTTATGATACACAGAGCGATATTGGGGTCTGTTGAACGT
ATGTTTGCTATACTGTTGGAACATTACAAGGGGAAGTGGCCTTTTTGGCT
CAGTCCACGTCAAGCAATTGTTTGCCCTGTGTCNNNGNAATCCCAACCAT
ATGCTTTACAGGTGCGGGATCATATTTATCGAGCCGGTTATTATGTTGAT
G
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