DN135274

Overview
NameDN135274
Unique NameDN135274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13572 contig Csv1_Contig13572:1203..1903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_MYXXD (Threonyl-tRNA synthetase OS=Myxococcus xanthus (strain DK 1622) GN=thrS PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.733e-64
Identity = 120/227 (52.86%), Postives = 161/227 (70.93%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            K  SYR+LPLR     VLHRNEA+G+L GLTRVR+F QDDAHI+C E+QI DEVR  ++ +D+ Y+  G TY +KLSTRPE+ LGD + W++AE  L  AL   G  +++  GDGAFYGPKID +VSD++ R++Q  T+QLD+  P+RF+L Y  ED A+  RPV++HRAI GS ER  AIL+EH+ G +P WL+P QA++  V+     YA +VRD +   GY V+
Sbjct:  352 KKHSYRDLPLRYHTQDVLHRNEAAGSLGGLTRVRQFAQDDAHIYCTEAQITDEVRRFVKLLDHVYKAVGLTYAVKLSTRPEQRLGDDSLWDRAEGGLKAALESLGLEYELAPGDGAFYGPKIDFAVSDSIGRRWQLGTMQLDYLAPERFDLTYVGEDNAE-HRPVVLHRAIFGSFERFTAILIEHFAGAFPAWLAPIQAVLVTVADRQNDYARKVRDSLRAKGYRVE 577          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_SYNWW (Threonyl-tRNA synthetase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=thrS PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.263e-64
Identity = 119/226 (52.65%), Postives = 157/226 (69.47%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            + SY+ELPLR+ + G++HR+E SG L GL RVR F QDDAHIF    QI DE++GV++ +D  Y +FGF Y ++LST+PEK +G    WE A  AL +AL E G  +++NEGDGAFYGPKID  + D+L R +QC T+QLDFQ+P++F+L Y  ED  K  RPVMIHR I GS+ER   IL EH+ G +P WL+P Q  V P++  SQ YA QV   + +AG  V+
Sbjct:  344 LHSYKELPLRMGEMGLVHRHEMSGVLHGLMRVRAFTQDDAHIFMLPEQIIDEIKGVMDLVDRFYSLFGFPYHVELSTKPEKAMGSDEIWEVATNALIKALEERGMEYKVNEGDGAFYGPKIDFHLQDSLDRTWQCGTIQLDFQMPEKFDLTYVGEDGGK-HRPVMIHRVIYGSIERFIGILTEHFGGAFPLWLAPVQVRVLPITQRSQDYARQVVAELEQAGIRVE 568          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYTC_ENTBH (Probable threonyl-tRNA synthetase, cytoplasmic OS=Enterocytozoon bieneusi (strain H348) GN=EBI_22768 PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.263e-64
Identity = 124/213 (58.22%), Postives = 149/213 (69.95%), Query Frame = 2
Query:   26 RSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQV 664
            RSY+ELPLR ADFGVLHRNE SG+LTGLTRVRRFQQDDAHIF  +S IK+E+   + F+   Y IF F YEL LSTRP K+LG +  W+ AE +L +A+ + G  + +NEGDGAFYGPKIDI + D L RK QCAT+QLDFQLP RF+L +  E     E PV+IHRAILGS ER  AIL+E Y    PFWL PRQ  +  +    + Y   V
Sbjct:  339 RSYKELPLRYADFGVLHRNECSGSLTGLTRVRRFQQDDAHIFTSKSSIKEEIENAIGFLKTVYSIFNFKYELFLSTRPTKFLGTIEEWDVAEKSLKDAIIDSGHTYTLNEGDGAFYGPKIDIILHDILNRKIQCATIQLDFQLPQRFDLKFKNE-LGMYETPVIIHRAILGSFERFIAILIESYGKHLPFWLHPRQVGLVTIDCKHENYMYTV 550          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_CLOD6 (Threonyl-tRNA synthetase OS=Clostridium difficile (strain 630) GN=thrS PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.956e-64
Identity = 120/227 (52.86%), Postives = 151/227 (66.52%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            ++ SYR+ P+R+A+ G +HR+E SGAL GL RVR F QDD+HIF    QIKDE++GV   ID  Y+ FGF Y L+LSTRPE  +G    WE AE  L EAL E G P+ INEGDGAFYGPKID  + D L R +QC T+QLD QLP +F+  Y  +D  K  RPVMIHR   GS+ER   IL+EHY GK+P WLSP Q  + P+S     YA +V+  ++  G  V+
Sbjct:  343 QLHSYRDFPMRVAELGRVHRHELSGALQGLMRVRAFTQDDSHIFMLPEQIKDEIKGVANLIDGIYKTFGFEYNLELSTRPENSMGSDEEWEAAENGLREALEELGLPYTINEGDGAFYGPKIDFHLKDCLGRTWQCGTIQLDMQLPRQFDNTYIGQDGEK-HRPVMIHRVAFGSIERFIGILIEHYAGKFPVWLSPTQVKILPISDKFMDYANEVKKELFDKGIRVE 568          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_KOSOT (Threonyl-tRNA synthetase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=thrS PE=3 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.860e-64
Identity = 116/227 (51.10%), Postives = 154/227 (67.84%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            +  SYR+LPL+L +FG +HR E SG L GL RVR F QDDAHIFC   Q+K++++ V+ F+D  Y  FGF Y   L TRPE ++GD+  W+ A  AL +A+   G  +++NEGDGAFYGPKID  V+D++ R++QCAT+QLDF +P+RF L Y   D  K  RPVMIHRAI GS++R F IL+EHY G +P WL+P Q +  P+S     YA +V D +   G  VD
Sbjct:  347 RAMSYRDLPLKLFEFGKVHRYERSGVLHGLLRVRGFIQDDAHIFCTREQLKEQLKDVIRFVDMIYTPFGFEYRADLCTRPEDFMGDVEIWDLATEALKDAIESIGLEYKVNEGDGAFYGPKIDFHVTDSIGREWQCATIQLDFMMPERFELTYVGPDN-KEYRPVMIHRAIYGSLDRFFGILIEHYAGAFPTWLAPVQVVAIPISDKHVDYAREVADALAAEGVRVD 572          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYTM_YEAST (Threonyl-tRNA synthetase, mitochondrial OS=Saccharomyces cerevisiae GN=MST1 PE=1 SV=2)

HSP 1 Score: 243.817 bits (621), Expect = 6.585e-64
Identity = 117/215 (54.42%), Postives = 153/215 (71.16%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAY-RIFGFT---------YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVS 634
            K RSY ELPLR +DF  LHRNEASGAL+GLTR+R+F QDD HIFC  SQ+K E+   L+ ID  Y +IF F          Y +  STRP+ ++GDL  W  AE  L E L E GKPW++N GDGAFYGPK+DI V+D L++  Q AT+QLDFQLP+RF+L +  +D +  +RP+MIHRA  GS+ER  A+L++  +G+WPFWL+P QA++ PV+
Sbjct:  143 KDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDIVYNKIFPFVKGGSGAESNYFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAFYGPKLDIMVTDHLRKTHQVATIQLDFQLPERFDLKFKDQDNS-YKRPIMIHRATFGSIERFMALLIDSNEGRWPFWLNPYQAVIIPVN 356          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_THENN (Threonyl-tRNA synthetase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=thrS PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 8.600e-64
Identity = 119/223 (53.36%), Postives = 155/223 (69.51%), Query Frame = 2
Query:   29 SYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYV 697
            SYR+LPLR  +FG +HR E SG L GL RVR F QDDAHIFC   QI+DE+ GVLE I+  Y  FGFTY ++LST PE ++GD A WEKA  AL +AL+  G P+++NEG+GAFYGPKID  + D+L R++QCAT+QLDF +P++FN+ Y   D  +    VMIHRAI GS+ER F IL+EH+ G +P W++P Q  V P+S      A +V   + R G+ V
Sbjct:  345 SYRDLPLRFFEFGRVHRYERSGVLHGLMRVRSFTQDDAHIFCTPDQIEDEILGVLELINTIYSQFGFTYRVELSTMPEDHMGDEAIWEKATNALKKALDRAGLPYRVNEGEGAFYGPKIDFHIKDSLGREWQCATIQLDFMMPEKFNVTYIGPDN-REHTAVMIHRAIYGSLERFFGILIEHFAGAFPTWIAPVQVAVIPISDKHSEGAKKVATMLSREGFRV 566          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_GEOSM (Threonyl-tRNA synthetase OS=Geobacter sp. (strain M21) GN=thrS PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 8.600e-64
Identity = 117/226 (51.77%), Postives = 157/226 (69.47%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYV 697
            ++RSYR+LPLR  + G +HR+E +G L GL RVR F QDDAHI C   Q+  E++GV++F+     IFGF +E++LSTRPEK +G    WE A +AL  AL + G+P++INEGDGAFYGPKIDI + DAL R++QCAT+Q DF LP+RF+L Y   D  K +RPVM+HR ILG++ER   +L+EH+ G +P WL+P QA +  V+    PYA    D +  AG  V
Sbjct:  345 QLRSYRDLPLRYFELGTVHRHERAGVLHGLLRVRGFTQDDAHILCTPDQLDAEIKGVIQFVTEVMGIFGFEFEMELSTRPEKSIGSDDAWELATSALLNALKDSGRPYEINEGDGAFYGPKIDIKLRDALDRRWQCATIQCDFTLPERFDLTYVDADGEK-KRPVMVHRVILGAIERFIGVLIEHFAGNFPTWLAPVQATIVTVTDNQIPYAQAAFDKLRAAGIRV 569          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_HELHP (Threonyl-tRNA synthetase OS=Helicobacter hepaticus GN=thrS PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.467e-63
Identity = 122/226 (53.98%), Postives = 157/226 (69.47%), Query Frame = 2
Query:   26 RSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIY-RAGYYVD 700
            RSYRELPLR  ++G++HR+E SG L GL RVR F QDDAHIFC  SQIK EV  +L+F       FGF YE++LSTRP+K +G+   WE A AAL  AL E    +QI+EG GAFYGPKIDI ++DALKRK+QC T+Q+D  LP+RF L Y+ E   + + PVMIHRAILGS ER  AIL EH+ G++P +++P Q I+ P+      YA  +RD I  ++G Y +
Sbjct:  313 RSYRELPLRFYEYGIVHRHERSGVLHGLLRVREFTQDDAHIFCMTSQIKSEVNQILDFTKGIMNAFGFHYEMELSTRPQKSIGNDEVWENATAALKSALEENHISYQIDEGGGAFYGPKIDIKITDALKRKWQCGTIQIDMNLPERFELSYTDEHNVQVQ-PVMIHRAILGSFERFVAILTEHFGGEFPLFIAPTQVILIPIGEAQLEYARILRDKIITQSGAYAE 537          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_GEOBB (Threonyl-tRNA synthetase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=thrS PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.916e-63
Identity = 117/226 (51.77%), Postives = 156/226 (69.03%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYV 697
            ++RSYR+LPLR  + G +HR+E +G L GL RVR F QDDAHI C   Q+  E++GV++F+     IFGF +E++LSTRPEK +G    WE A  AL  AL + G+P++INEGDGAFYGPKIDI + DAL R++QCAT+Q DF LP+RF+L Y   D  K +RPVM+HR ILG++ER   +L+EH+ G +P WL+P QA +  V+    PYA    D +  AG  V
Sbjct:  345 QLRSYRDLPLRYFELGTVHRHERAGVLHGLLRVRGFTQDDAHILCTPEQLDAEIKGVIQFVTEVMGIFGFEFEMELSTRPEKSIGSDDAWELATNALLNALKDSGRPYEINEGDGAFYGPKIDIKLRDALDRRWQCATIQCDFTLPERFDLTYVDADGEK-KRPVMVHRVILGAIERFIGVLIEHFAGNFPTWLAPVQATIVTVTDNQIPYAQAAFDKLRAAGIRV 569          
The following BLAST results are available for this feature:
BLAST of DN135274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_MYXXD1.733e-6452.86Threonyl-tRNA synthetase OS=Myxococcus xanthus (st... [more]
SYT_SYNWW2.263e-6452.65Threonyl-tRNA synthetase OS=Syntrophomonas wolfei ... [more]
SYTC_ENTBH2.263e-6458.22Probable threonyl-tRNA synthetase, cytoplasmic OS=... [more]
SYT_CLOD62.956e-6452.86Threonyl-tRNA synthetase OS=Clostridium difficile ... [more]
SYT_KOSOT3.860e-6451.10Threonyl-tRNA synthetase OS=Kosmotoga olearia (str... [more]
SYTM_YEAST6.585e-6454.42Threonyl-tRNA synthetase, mitochondrial OS=Sacchar... [more]
SYT_THENN8.600e-6453.36Threonyl-tRNA synthetase OS=Thermotoga neapolitana... [more]
SYT_GEOSM8.600e-6451.77Threonyl-tRNA synthetase OS=Geobacter sp. (strain ... [more]
SYT_HELHP1.467e-6353.98Threonyl-tRNA synthetase OS=Helicobacter hepaticus... [more]
SYT_GEOBB1.916e-6351.77Threonyl-tRNA synthetase OS=Geobacter bemidjiensis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionwca08h07 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135274 ID=DN135274; Name=DN135274; organism=Citrus sinensis; type=EST; length=701bp
TACGGCCGGGGTTTGNNNTAAGGTTCGTTCATACAGAGAACTACCTCTGC
GACTGGCTGATTTTGGGGTCTTGCATCGGAATGAAGCCAGTGGAGCACTC
ACTGGATTAACTCGTGTCAGGAGATTTCAGCAGGATGACGCTCATATTTT
CTGCAGGGAGTCCCAGATAAAAGACGAAGTAAGGGGTGTCCTAGAGTTCA
TTGATTATGCCTACAGAATATTCGGGTTCACATATGAGCTGAAGCTATCA
ACTAGGCCTGAAAAGTATCTTGGGGACTTGGCAACTTGGGAGAAAGCCGA
AGCTGCTCTTACAGAAGCATTGAATGAGTTTGGGAAGCCATGGCAGATAA
ATGAAGGGGATGGAGCATTTTATGGACCAAAGATTGATATCAGTGTATCT
GATGCATTGAAGAGGAAATTCCAGTGTGCTACTTTGCAGCTTGACTTTCA
GCTTCCTGATCGTTTCAACTTGGGTTACTCAGCGGAAGATGAAGCCAAGA
CAGAGAGACCTGTTATGATACACAGAGCGATATTGGGGTCTGTTGAACGT
ATGTTTGCTATACTGTTGGAACATTACAAGGGGAAGTGGCCTTTTTGGCT
CAGTCCACGTCAAGCAATTGTTTGCCCTGTGTCNNNGNAATCCCAACCAT
ATGCTTTACAGGTGCGGGATCATATTTATCGAGCCGGTTATTATGTTGAT
G
back to top