DN135274

Overview
NameDN135274
Unique NameDN135274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13572 contig Csv1_Contig13572:1203..1903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_DESMR (Threonyl-tRNA synthetase OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=thrS PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.622e-62
Identity = 115/227 (50.66%), Postives = 157/227 (69.16%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            +VRSYR+LP R  + GV+HR+E SG L GL RVR+F QDDAHI CR  Q+++E+ GV+ F+     +FGF +E +LSTRPEK +G    W++A  AL +A+   G P+++NEGDGAFYGPKIDI + DAL R++QCAT+Q DF LP+RF+L Y+  D  + +RPVM+HR ILG+VER   +L+EH  G  P WLSP QA +  V+   + +A Q    +  AG  V+
Sbjct:  344 RVRSYRDLPQRYFELGVVHRHEKSGVLHGLLRVRQFTQDDAHILCRPDQLQEEITGVVRFVQDVVGLFGFDFEAELSTRPEKSIGSDEDWDRATKALVDAMESIGLPYEVNEGDGAFYGPKIDIKLKDALDRRWQCATIQCDFTLPERFDLVYTDAD-GERKRPVMLHRVILGAVERFLGVLIEHTAGALPTWLSPVQARILIVTDAQKEFAEQALARLKEAGIRVE 569          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_CAMJR (Threonyl-tRNA synthetase OS=Campylobacter jejuni (strain RM1221) GN=thrS PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.118e-62
Identity = 115/218 (52.75%), Postives = 156/218 (71.56%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHI 676
            VRSYR+LPL+  ++GV+HR+E SG L GL RVR F QDDAHIFC  SQIK++V  +L F+D   ++F F+YE+++ST+PEK +GD   WE A  AL EAL+E G  + I+EG GAFYGPKIDI ++DALKRK+QC T+Q+DF LP RF L Y+  D  K ++PVM+HRAILGS ER   IL EH  G++PF+++P    + P+      YA +++  +
Sbjct:  311 VRSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDNLMKLFDFSYEMEISTKPEKAIGDDEIWEVATKALKEALDEQGLKYGIDEGGGAFYGPKIDIKITDALKRKWQCGTIQVDFNLPSRFKLEYTDSDNEK-KQPVMLHRAILGSFERFIGILTEHCAGEFPFFIAPTAVGIVPIGEAHIAYAKEIQKEL 527          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_CAMJD (Threonyl-tRNA synthetase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=thrS PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.118e-62
Identity = 115/218 (52.75%), Postives = 156/218 (71.56%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHI 676
            VRSYR+LPL+  ++GV+HR+E SG L GL RVR F QDDAHIFC  SQIK++V  +L F+D   ++F F+YE+++ST+PEK +GD   WE A  AL EAL+E G  + I+EG GAFYGPKIDI ++DALKRK+QC T+Q+DF LP RF L Y+  D  K ++PVM+HRAILGS ER   IL EH  G++PF+++P    + P+      YA +++  +
Sbjct:  311 VRSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDNLMKLFDFSYEMEISTKPEKAIGDDEIWEVATKALKEALDEQGLKYGIDEGGGAFYGPKIDIKITDALKRKWQCGTIQVDFNLPSRFKLEYTDSDNEK-KQPVMLHRAILGSFERFIGILTEHCAGEFPFFIAPTAVGIVPIGEAHIAYAKEIQKEL 527          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_CAMJ8 (Threonyl-tRNA synthetase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=thrS PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.118e-62
Identity = 115/218 (52.75%), Postives = 156/218 (71.56%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHI 676
            VRSYR+LPL+  ++GV+HR+E SG L GL RVR F QDDAHIFC  SQIK++V  +L F+D   ++F F+YE+++ST+PEK +GD   WE A  AL EAL+E G  + I+EG GAFYGPKIDI ++DALKRK+QC T+Q+DF LP RF L Y+  D  K ++PVM+HRAILGS ER   IL EH  G++PF+++P    + P+      YA +++  +
Sbjct:  311 VRSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDNLMKLFDFSYEMEISTKPEKAIGDDEIWEVATKALKEALDEQGLKYGIDEGGGAFYGPKIDIKITDALKRKWQCGTIQVDFNLPSRFKLEYTDSDNEK-KQPVMLHRAILGSFERFIGILTEHCAGEFPFFIAPTAVGIVPIGEAHIAYAKEIQKEL 527          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_HELPJ (Threonyl-tRNA synthetase OS=Helicobacter pylori J99 GN=thrS PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.766e-62
Identity = 116/226 (51.33%), Postives = 159/226 (70.35%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            + SYR+LPLR  ++GV+HR+E SG L GL RVR F QDDAHIFC   QI+ EV  +L+F     + FGF+YE++LSTRP K +GD   WEKA  AL EAL E    ++I+EG GAFYGPKIDI ++DALKRK+QC T+Q+D  LP+RF L ++ E     E+PVMIHRAILGS ER  AIL EH+ G +PF+++P Q  + P++     +AL++++ + +   +V+
Sbjct:  321 LHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSEVSAILDFTHKIMQAFGFSYEMELSTRPAKSIGDDKVWEKATNALKEALKEHRIDYKIDEGGGAFYGPKIDIKITDALKRKWQCGTIQVDMNLPERFKLAFTNEYN-HAEQPVMIHRAILGSFERFIAILSEHFGGNFPFFVAPTQIALIPINEEHHVFALKLKEALKKCDIFVE 545          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_HELAH (Threonyl-tRNA synthetase OS=Helicobacter acinonychis (strain Sheeba) GN=thrS PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.766e-62
Identity = 115/226 (50.88%), Postives = 159/226 (70.35%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            + SYR+LPLR  ++GV+HR+E SG L GL RVR F QDDAHIFC   QI+ EV  +L+F     + F F+YE++LSTRP K +GD   WEKA  AL EAL E    ++I+EG GAFYGPKIDI ++DALKRK+QC T+Q+D  LP+RF L ++ E     E+PVMIHRAILGS ER  AIL EH+ G +PF+++P Q ++ P++     +AL++++ + +   +V+
Sbjct:  321 LHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSEVSAILDFTHKIMKAFDFSYEMELSTRPAKSIGDDKVWEKATNALKEALKEHHINYKIDEGGGAFYGPKIDIKITDALKRKWQCGTIQVDMNLPERFKLAFTNEHN-NAEQPVMIHRAILGSFERFIAILSEHFWGNFPFFVAPTQIVLIPINEEHHVFALKLKEELKKRDIFVE 545          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_CAMJE (Threonyl-tRNA synthetase OS=Campylobacter jejuni GN=thrS PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.766e-62
Identity = 115/218 (52.75%), Postives = 156/218 (71.56%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHI 676
            VRSYR+LPL+  ++GV+HR+E SG L GL RVR F QDDAHIFC  SQIK++V  +L F+D   ++F F+YE+++ST+PEK +GD   WE A  AL EAL+E G  + I+EG GAFYGPKIDI ++DALKRK+QC T+Q+DF LP RF L Y+  D  K ++PVM+HRAILGS ER   IL EH  G++PF+++P    + P+      YA +++  +
Sbjct:  311 VRSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDNLMKLFDFSYEMEISTKPEKAIGDDEIWEIATKALKEALDEQGLKYGIDEGGGAFYGPKIDIKITDALKRKWQCGTIQVDFNLPSRFKLEYTDSDNEK-KQPVMLHRAILGSFERFIGILTEHCAGEFPFFIAPTAVGIVPIGEAHIAYAKEIQKEL 527          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_SYNPX (Threonyl-tRNA synthetase OS=Synechococcus sp. (strain WH8102) GN=thrS PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.613e-62
Identity = 117/224 (52.23%), Postives = 154/224 (68.75%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAG 688
            K+RSYRELP+R A+ G ++R E  G + GL RVR F QDDAH+FC   QI DE+  +L+  +     F F TYE+ LSTRPEK +GD A W+ A   L EAL   G  ++I+EG GAFYGPKID+ + DA+ R +QC+T+QLDF LP+RF L Y A D +K +RP+MIHRAI GS+ER F I+ E+Y G +PFWL+P Q  + PV+   QPYA  + D + +AG
Sbjct:  312 KLRSYRELPIRWAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCLPEQISDEILKILDLTERILSTFDFNTYEINLSTRPEKSIGDDAVWDLATKGLIEALERKGWKYKIDEGGGAFYGPKIDLKIEDAIGRMWQCSTIQLDFNLPERFKLDYVAADGSK-QRPIMIHRAIFGSLERFFGIMTENYAGDYPFWLAPEQVRLLPVTDEVQPYAESLLDQLTQAG 534          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_METCA (Threonyl-tRNA synthetase OS=Methylococcus capsulatus GN=thrS PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.613e-62
Identity = 120/226 (53.10%), Postives = 152/226 (67.26%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYV 697
            ++SYR+LPLRLA+FG  HRNE SGAL GL RVR F QDDAHIFC E QI+DEV   ++ +   Y  FGF+  ++KLSTRPEK +G    W+KAE AL  ALN  G  W +  G+GAFYGPKI+ S+ D L R +QC T+Q+DF +PDR    Y AED A+   PVM+HRAILGS+ER   IL EHY G++P WL+P QA+V  ++     YA +V       G+ V
Sbjct:  344 LKSYRDLPLRLAEFGSCHRNELSGALHGLMRVRGFTQDDAHIFCTEEQIQDEVSRFIDLLFKVYADFGFSEVQIKLSTRPEKRVGSDEVWDKAEHALETALNAKGLAWDLQPGEGAFYGPKIEFSLKDCLDRVWQCGTIQVDFSMPDRLGATYVAEDGAR-HVPVMLHRAILGSLERFVGILTEHYAGQYPLWLAPVQAVVLNITDRQADYAREVAQEFVSKGFRV 568          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_SYNSC (Threonyl-tRNA synthetase OS=Synechococcus sp. (strain CC9605) GN=thrS PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.163e-62
Identity = 116/224 (51.79%), Postives = 155/224 (69.20%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAG 688
            K+RSYRELP+R A+ G ++R E  G + GL RVR F QDDAH+FC   QI DE+  +L+  +     F F+ YE+ LSTRPEK +G+ A W+ A   L EAL   G  ++I+EG GAFYGPKID+ + DA+ R +QC+T+QLDF LP+RF L Y A D +K +RP+MIHRAI GS+ER F I+ E+Y G +PFWL+P Q  + PV+   QPYA Q+ D + +AG
Sbjct:  312 KLRSYRELPIRWAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCLPEQISDEILKILDLTERILSAFDFSNYEINLSTRPEKSIGEDAVWDLATKGLIEALERKGWAYKIDEGGGAFYGPKIDLKIEDAIGRMWQCSTIQLDFNLPERFELDYIAADGSK-QRPIMIHRAIFGSLERFFGIMTENYAGDYPFWLAPEQVRLLPVTDEVQPYAEQLLDQLTKAG 534          
The following BLAST results are available for this feature:
BLAST of DN135274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_DESMR1.622e-6250.66Threonyl-tRNA synthetase OS=Desulfovibrio magnetic... [more]
SYT_CAMJR2.118e-6252.75Threonyl-tRNA synthetase OS=Campylobacter jejuni (... [more]
SYT_CAMJD2.118e-6252.75Threonyl-tRNA synthetase OS=Campylobacter jejuni s... [more]
SYT_CAMJ82.118e-6252.75Threonyl-tRNA synthetase OS=Campylobacter jejuni s... [more]
SYT_HELPJ2.766e-6251.33Threonyl-tRNA synthetase OS=Helicobacter pylori J9... [more]
SYT_HELAH2.766e-6250.88Threonyl-tRNA synthetase OS=Helicobacter acinonych... [more]
SYT_CAMJE2.766e-6252.75Threonyl-tRNA synthetase OS=Campylobacter jejuni G... [more]
SYT_SYNPX3.613e-6252.23Threonyl-tRNA synthetase OS=Synechococcus sp. (str... [more]
SYT_METCA3.613e-6253.10Threonyl-tRNA synthetase OS=Methylococcus capsulat... [more]
SYT_SYNSC6.163e-6251.79Threonyl-tRNA synthetase OS=Synechococcus sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionwca08h07 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135274 ID=DN135274; Name=DN135274; organism=Citrus sinensis; type=EST; length=701bp
TACGGCCGGGGTTTGNNNTAAGGTTCGTTCATACAGAGAACTACCTCTGC
GACTGGCTGATTTTGGGGTCTTGCATCGGAATGAAGCCAGTGGAGCACTC
ACTGGATTAACTCGTGTCAGGAGATTTCAGCAGGATGACGCTCATATTTT
CTGCAGGGAGTCCCAGATAAAAGACGAAGTAAGGGGTGTCCTAGAGTTCA
TTGATTATGCCTACAGAATATTCGGGTTCACATATGAGCTGAAGCTATCA
ACTAGGCCTGAAAAGTATCTTGGGGACTTGGCAACTTGGGAGAAAGCCGA
AGCTGCTCTTACAGAAGCATTGAATGAGTTTGGGAAGCCATGGCAGATAA
ATGAAGGGGATGGAGCATTTTATGGACCAAAGATTGATATCAGTGTATCT
GATGCATTGAAGAGGAAATTCCAGTGTGCTACTTTGCAGCTTGACTTTCA
GCTTCCTGATCGTTTCAACTTGGGTTACTCAGCGGAAGATGAAGCCAAGA
CAGAGAGACCTGTTATGATACACAGAGCGATATTGGGGTCTGTTGAACGT
ATGTTTGCTATACTGTTGGAACATTACAAGGGGAAGTGGCCTTTTTGGCT
CAGTCCACGTCAAGCAATTGTTTGCCCTGTGTCNNNGNAATCCCAACCAT
ATGCTTTACAGGTGCGGGATCATATTTATCGAGCCGGTTATTATGTTGAT
G
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