DN135274

Overview
NameDN135274
Unique NameDN135274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13572 contig Csv1_Contig13572:1203..1903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_CLOTH (Threonyl-tRNA synthetase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=thrS PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.163e-62
Identity = 116/227 (51.10%), Postives = 151/227 (66.52%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            K+ SYR+LP RLA+ G++HR+E SG L GL RVR F QDDAHIF    QI+ E+ GV+  ID  Y++FGF Y ++LSTRPE  +G    WE+A  AL  AL + G  ++INEGDGAFYGPKID  + D++ R +QC T+QLDFQ+P+RF+L Y   D  K  RPVMIHR + GS+ER  AIL EHY G +P WLSP Q  + P+      Y  +V+  +   G  V+
Sbjct:  343 KLHSYRDLPQRLAELGLVHRHELSGVLHGLMRVRCFTQDDAHIFMTPDQIESEILGVISLIDDFYKVFGFKYHVELSTRPENSMGSDEDWERATNALKNALEKKGIDYKINEGDGAFYGPKIDFHLEDSIGRTWQCGTIQLDFQMPERFDLTYIGPDGEK-HRPVMIHRVVFGSIERFIAILTEHYAGAFPVWLSPVQVKILPILEKQHDYVAEVKKALEEKGVRVE 568          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_NITEU (Threonyl-tRNA synthetase OS=Nitrosomonas europaea GN=thrS PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.049e-62
Identity = 120/223 (53.81%), Postives = 152/223 (68.16%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYEL-KLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAG 688
            +RSYR+LPLRLA+FG  HRNEASGAL GL RVR F QDDAHIFC E QI  EV   ++ ++  Y  FGF+  L KLSTRP K +G    W+KAE AL  ALN+    W++  G+GAFYGPKI+ ++ D+L RK+QC TLQLDF +P R   GY AED  + + PVM+HRAILGS+ER   IL+EH+ G  P WLSP Q I+  +S     YA  + D + ++G
Sbjct:  344 LRSYRDLPLRLAEFGSCHRNEASGALHGLMRVRSFTQDDAHIFCTEDQILGEVTKFIDLLNQVYINFGFSETLIKLSTRPLKRVGTEDQWDKAETALATALNQKELNWEVQPGEGAFYGPKIEFTLKDSLGRKWQCGTLQLDFSMPARLGAGYIAEDNTR-KIPVMLHRAILGSMERFIGILIEHHAGALPLWLSPEQVIILNISRNQAEYAQLITDELKQSG 565          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_HELPG (Threonyl-tRNA synthetase OS=Helicobacter pylori (strain G27) GN=thrS PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.049e-62
Identity = 115/226 (50.88%), Postives = 159/226 (70.35%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            + SYR+LPLR  ++GV+HR+E SG L GL RVR F QDDAHIFC   QI+ EV  +L+F     + F F+YE++LSTRP K +GD   WEKA +AL EAL E    ++I+EG GAFYGPKIDI ++DALKRK+QC T+Q+D  LP+RF L ++ E     E+PVMIHRAILGS ER  AIL EH+ G +PF+++P Q  + P++     +AL++++ + +   +V+
Sbjct:  321 LHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSEVSAILDFTHKIMQAFDFSYEMELSTRPAKSIGDDKVWEKATSALKEALKEHRIDYKIDEGGGAFYGPKIDIKITDALKRKWQCGTIQVDMNLPERFKLAFTNE-RNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFFVAPTQIALIPINEEHHVFALKLKEALKKRDIFVE 545          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_HELP2 (Threonyl-tRNA synthetase OS=Helicobacter pylori (strain P12) GN=thrS PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.051e-61
Identity = 115/226 (50.88%), Postives = 159/226 (70.35%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            + SYR+LPLR  ++GV+HR+E SG L GL RVR F QDDAHIFC   QI+ EV  +L+F     + F F+YE++LSTRP K +GD   WEKA +AL EAL E    ++I+EG GAFYGPKIDI ++DALKRK+QC T+Q+D  LP+RF L ++ E     E+PVMIHRAILGS ER  AIL EH+ G +PF+++P Q  + P++     +AL++++ + +   +V+
Sbjct:  321 LHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSEVSAILDFTHKIMQAFDFSYEMELSTRPAKSIGDDEVWEKATSALKEALKEHRIDYKIDEGGGAFYGPKIDIKITDALKRKWQCGTIQVDMNLPERFKLAFTNE-RNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFFVAPTQIALIPINEEHHVFALKLKEVLKKRDIFVE 545          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_DESRM (Threonyl-tRNA synthetase OS=Desulfotomaculum reducens (strain MI-1) GN=thrS PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.051e-61
Identity = 114/215 (53.02%), Postives = 148/215 (68.84%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQV 664
            ++ SYR+LPLR  + G++HR+E SGAL GL RVR F QDDAHIF   SQIKDE+ GV++  DY Y  FG  Y ++LSTRPEK +G    WE A  +L +AL      +++NEGDGAFYGPKID  ++D+L R +QC T+QLDFQ+P+RFNL Y  ED  K  RPVMIHR + GS+ER   IL EH+ G +P WL+P Q  V P++     YA ++
Sbjct:  343 RMHSYRDLPLRWGELGLVHRHELSGALHGLMRVRCFTQDDAHIFMLPSQIKDEIIGVIDLFDYFYNTFGLNYHVELSTRPEKSMGSDEMWEVATNSLRDALEAKKMDYKVNEGDGAFYGPKIDFHLTDSLGRTWQCGTIQLDFQMPERFNLNYVGEDGQK-HRPVMIHRVVFGSIERFIGILTEHFAGAFPVWLAPVQVKVLPITDRHHEYAREL 556          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_THETN (Threonyl-tRNA synthetase OS=Thermoanaerobacter tengcongensis GN=thrS PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.373e-61
Identity = 111/218 (50.92%), Postives = 148/218 (67.89%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHI 676
            +RSYR+LPLRL + G++HR+E SG L GL RVR F QDDAH+F    Q++DE+ GV+  +DY Y+IFGF Y ++LSTRPE  +G    WE A  AL  AL     P+++NEG+GAFYGPKID  + D++ R +QC T+QLDFQ+P+RF L Y   D  K  RP+M+HR I GS+ER   IL EH+ G +P WL+P Q  V P+S     YA +V + +
Sbjct:  353 LRSYRDLPLRLCELGLVHRHELSGVLHGLMRVRSFTQDDAHLFMTPEQVEDEILGVINLVDYFYKIFGFEYHVELSTRPENSMGTDEEWELATNALISALKRANLPYKVNEGEGAFYGPKIDFHLKDSIGRTWQCGTIQLDFQMPERFELEYIGPDGEK-HRPIMLHRVIYGSIERFIGILTEHFAGAFPTWLAPVQVRVLPISEKHHEYARKVYERL 569          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_HELPS (Threonyl-tRNA synthetase OS=Helicobacter pylori (strain Shi470) GN=thrS PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.373e-61
Identity = 115/226 (50.88%), Postives = 158/226 (69.91%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            + SYR+LPLR  ++GV+HR+E SG L GL RVR F QDDAHIFC   QI+ EV  +L+F     + F F+YE++LSTRP K +GD   WEKA  AL EAL E    ++I+EG GAFYGPKIDI ++DALKRK+QC T+Q+D  LP+RF L ++ E     E+PVMIHRAILGS ER  AIL EH+ G +PF+++P Q  + P++     +AL++++ + +   +V+
Sbjct:  321 LHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSEVSAILDFTHKIMQAFDFSYEMELSTRPAKSIGDDKVWEKATNALKEALKEHRIDYKIDEGGGAFYGPKIDIKITDALKRKWQCGTIQVDMNLPERFKLAFTNEHN-HAEQPVMIHRAILGSFERFIAILSEHFGGNFPFFVAPTQIALIPINEEHHVFALKLKEALKKRDIFVE 545          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_FUSNN (Threonyl-tRNA synthetase OS=Fusobacterium nucleatum subsp. nucleatum GN=thrS PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.373e-61
Identity = 113/224 (50.45%), Postives = 156/224 (69.64%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAY-RIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAG 688
            ++ SY++LP RLA+ G +HR+E SGAL GL RVR F QDD+HIF    Q++DE+ GV+  ID  Y ++FGF YE++LST+PEK +G    W+ AEAAL  AL++ G+ ++IN GDGAFYGPK+D  + DA+ R +QC T+QLDF LP+RF++ Y  ED  K  RPVM+HR I GS+ER   IL+EHY G +P WL+P Q  V  ++    PYA ++ + +   G
Sbjct:  325 QLHSYKDLPARLAELGRVHRHEFSGALHGLMRVRSFTQDDSHIFMTPDQVQDEIIGVVNLIDKFYSKLFGFEYEIELSTKPEKAIGSQEIWDMAEAALAGALDKLGRKYKINPGDGAFYGPKLDFKIKDAIGRMWQCGTIQLDFNLPERFDVTYIGEDGEK-HRPVMLHRVIYGSIERFIGILIEHYAGAFPMWLAPVQVKVLTLNDECIPYAKEIMNKLEELG 547          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_DESAD (Threonyl-tRNA synthetase OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=thrS PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.373e-61
Identity = 115/223 (51.57%), Postives = 151/223 (67.71%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAG 688
            ++RSYR+LP R  + GV+HR+E SG L GL RVR F QDDAH+ CR  Q++DE+ GV +F+     +FGF YE ++ST+PEK +G    W++A  AL  AL E G  + INEGDGAFYGPKIDI + DAL+R++QCAT+Q DF LP+RF+L Y  ED  +  RPVM+HR ILGS+ER   +LLEH  G  P WLSP QA +  V+     +A +V   +   G
Sbjct:  341 RLRSYRDLPQRYFEHGVVHRHEKSGVLHGLLRVRTFTQDDAHLICRPDQLRDEIIGVAKFVGDVMGLFGFEYEAEVSTKPEKAIGSDEDWDRATEALEGALKEMGMEYSINEGDGAFYGPKIDIIIKDALERRWQCATIQCDFTLPERFDLSYVGED-GERHRPVMLHRVILGSIERFIGVLLEHTGGALPAWLSPVQAKILTVTDSQNEFAQKVLQFLREKG 562          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_SYNPW (Threonyl-tRNA synthetase OS=Synechococcus sp. (strain WH7803) GN=thrS PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.793e-61
Identity = 116/224 (51.79%), Postives = 153/224 (68.30%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAG 688
            K+RSYRELP+R A+ G ++R E  G + GL RVR F QDDAH+FC   QI DE+  +L+  +     F F TYE+ LSTRPEK +GD A W+ A   L EAL   G  ++I+EG GAFYGPKID+ + DA+ R +QC+T+QLDF LP+RF L Y A D +K +RP+MIHRAI GS+ER F I+ E+Y G +P WL+P Q  + PV+   QPYA  + D + +AG
Sbjct:  312 KLRSYRELPIRWAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCLPEQISDEILKILDLTERILSTFDFNTYEINLSTRPEKSIGDDAVWDLATKGLIEALERKGWAYKIDEGGGAFYGPKIDLKIEDAIGRMWQCSTIQLDFNLPERFKLDYIAADGSK-QRPIMIHRAIFGSLERFFGIMTENYAGDYPLWLAPEQVRLLPVTDEVQPYAESLLDQLTQAG 534          
The following BLAST results are available for this feature:
BLAST of DN135274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_CLOTH6.163e-6251.10Threonyl-tRNA synthetase OS=Clostridium thermocell... [more]
SYT_NITEU8.049e-6253.81Threonyl-tRNA synthetase OS=Nitrosomonas europaea ... [more]
SYT_HELPG8.049e-6250.88Threonyl-tRNA synthetase OS=Helicobacter pylori (s... [more]
SYT_HELP21.051e-6150.88Threonyl-tRNA synthetase OS=Helicobacter pylori (s... [more]
SYT_DESRM1.051e-6153.02Threonyl-tRNA synthetase OS=Desulfotomaculum reduc... [more]
SYT_THETN1.373e-6150.92Threonyl-tRNA synthetase OS=Thermoanaerobacter ten... [more]
SYT_HELPS1.373e-6150.88Threonyl-tRNA synthetase OS=Helicobacter pylori (s... [more]
SYT_FUSNN1.373e-6150.45Threonyl-tRNA synthetase OS=Fusobacterium nucleatu... [more]
SYT_DESAD1.373e-6151.57Threonyl-tRNA synthetase OS=Desulfovibrio salexige... [more]
SYT_SYNPW1.793e-6151.79Threonyl-tRNA synthetase OS=Synechococcus sp. (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionwca08h07 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135274 ID=DN135274; Name=DN135274; organism=Citrus sinensis; type=EST; length=701bp
TACGGCCGGGGTTTGNNNTAAGGTTCGTTCATACAGAGAACTACCTCTGC
GACTGGCTGATTTTGGGGTCTTGCATCGGAATGAAGCCAGTGGAGCACTC
ACTGGATTAACTCGTGTCAGGAGATTTCAGCAGGATGACGCTCATATTTT
CTGCAGGGAGTCCCAGATAAAAGACGAAGTAAGGGGTGTCCTAGAGTTCA
TTGATTATGCCTACAGAATATTCGGGTTCACATATGAGCTGAAGCTATCA
ACTAGGCCTGAAAAGTATCTTGGGGACTTGGCAACTTGGGAGAAAGCCGA
AGCTGCTCTTACAGAAGCATTGAATGAGTTTGGGAAGCCATGGCAGATAA
ATGAAGGGGATGGAGCATTTTATGGACCAAAGATTGATATCAGTGTATCT
GATGCATTGAAGAGGAAATTCCAGTGTGCTACTTTGCAGCTTGACTTTCA
GCTTCCTGATCGTTTCAACTTGGGTTACTCAGCGGAAGATGAAGCCAAGA
CAGAGAGACCTGTTATGATACACAGAGCGATATTGGGGTCTGTTGAACGT
ATGTTTGCTATACTGTTGGAACATTACAAGGGGAAGTGGCCTTTTTGGCT
CAGTCCACGTCAAGCAATTGTTTGCCCTGTGTCNNNGNAATCCCAACCAT
ATGCTTTACAGGTGCGGGATCATATTTATCGAGCCGGTTATTATGTTGAT
G
back to top