DN135274

Overview
NameDN135274
Unique NameDN135274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13572 contig Csv1_Contig13572:1203..1903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_HELPY (Threonyl-tRNA synthetase OS=Helicobacter pylori GN=thrS PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.342e-61
Identity = 115/226 (50.88%), Postives = 158/226 (69.91%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            + SYR+LPLR  ++GV+HR+E SG L GL RVR F QDDAHIFC   QI+ EV  +L+F     + F F+YE++LSTRP K +GD   WEKA  AL EAL E    ++I+EG GAFYGPKIDI ++DALKRK+QC T+Q+D  LP+RF L ++ E     E+PVMIHRAILGS ER  AIL EH+ G +PF+++P Q  + P++     +AL++++ + +   +V+
Sbjct:  321 LHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSEVSAILDFTHKIMQAFDFSYEMELSTRPAKSIGDDKVWEKATNALKEALKEHRIDYKIDEGGGAFYGPKIDIKITDALKRKWQCGTIQVDMNLPERFKLAFTNEYN-HAEQPVMIHRAILGSFERFIAILSEHFGGNFPFFVAPTQIALIPINEEHHVFALKLKEALKKRDIFVE 545          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_HELPH (Threonyl-tRNA synthetase OS=Helicobacter pylori (strain HPAG1) GN=thrS PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.342e-61
Identity = 114/226 (50.44%), Postives = 158/226 (69.91%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            + SYR+LPLR  ++GV+HR+E SG L GL RVR F QDDAHIFC   QI+ EV  +L+F     + F F+YE++LSTRP K +GD   WEKA  AL EAL E    ++I+EG GAFYGPKIDI ++DAL+RK+QC T+Q+D  LP+RF L ++ E     E+PVMIHRAILGS ER  AIL EH+ G +PF+++P Q  + P++     +AL++++ + +   +V+
Sbjct:  321 LHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSEVSAILDFTHKIMQAFDFSYEMELSTRPAKSIGDDEVWEKATNALKEALKEHRIDYKIDEGGGAFYGPKIDIKITDALRRKWQCGTIQVDMNLPERFKLAFTNE-RNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFFVAPTQIALIPINEEHHVFALKLKEELKKRDIFVE 545          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_SYNS9 (Threonyl-tRNA synthetase OS=Synechococcus sp. (strain CC9902) GN=thrS PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.059e-61
Identity = 117/224 (52.23%), Postives = 153/224 (68.30%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAG 688
            K+RSYRELP+R A+ G ++R E  G + GL RVR F QDDAH+FC   QI DE+  +L+  +     F F  YE+ LSTRPEK +G  A WE A   LTEAL   G  ++I+EG GAFYGPKID+ + DA+ R +QC+T+QLDF LP+RF L Y A D +K ++P+MIHRAI GS+ER F I+ E+Y G +PFWL+P Q  + PV+   QPYA QV + +  AG
Sbjct:  312 KLRSYRELPIRWAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCLPDQISDEILRILDLTERILSTFDFNHYEINLSTRPEKSIGSEAVWELATKGLTEALERKGWNFKIDEGGGAFYGPKIDLKIEDAIGRMWQCSTIQLDFNLPERFGLDYVAADGSK-QQPIMIHRAIFGSLERFFGIMTENYAGDFPFWLAPEQIRLLPVTDDVQPYAEQVLNQLKTAG 534          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_SULNB (Threonyl-tRNA synthetase OS=Sulfurovum sp. (strain NBC37-1) GN=thrS PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.995e-61
Identity = 112/221 (50.68%), Postives = 154/221 (69.68%), Query Frame = 2
Query:   26 RSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAG 688
            +SYR+LP++  ++GV+HR+E SG L GL RVR F QDDAHIFC   QI  EV  V+EF+D   ++F F Y +++ST+PEK +GD   WE A   L +AL     P+ I+EG GAFYGPKIDI ++DA+ RK+QC T+Q+DF LP+RF++ Y AED ++ +RPVM+HRAILGS ER   IL EHY G++PF+++P Q I  P+S     YA  ++  +   G
Sbjct:  314 KSYRDLPVKYYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCAPEQIASEVLEVVEFVDSVMKLFEFEYTMEISTKPEKAIGDDEVWETATQGLKDALKGNDLPYTIDEGGGAFYGPKIDIKITDAIGRKWQCGTIQVDFNLPERFDVEYVAEDNSR-KRPVMLHRAILGSFERFIGILTEHYAGEFPFFIAPTQVIFVPISEGHAGYAYGLKKKLMLEG 533          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_PSEPW (Threonyl-tRNA synthetase OS=Pseudomonas putida (strain W619) GN=thrS PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.217e-61
Identity = 115/224 (51.34%), Postives = 152/224 (67.86%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGY 691
            ++SYR+LPLRLA+FG  HRNE SGAL G+ RVR F QDDAHIFC E Q+K E    ++     Y+ FGFT   +KLSTRP K +G    W++AE AL +ALNE G  W+   G+GAFYGPKI+ ++ D L R +QC TLQ D  LP+R +  Y AED A+ +RPVM+HRAILGS ER   +L+EHY G +P WL+P QA++  ++     +ALQV   +  +G+
Sbjct:  344 LKSYRDLPLRLAEFGACHRNEPSGALHGIMRVRGFVQDDAHIFCTEDQVKKEAADFIKLTLDVYKDFGFTDVAMKLSTRPAKRVGSEELWDRAEGALADALNESGLEWEYQPGEGAFYGPKIEFTLRDCLGRNWQCGTLQYDPNLPERLDASYIAEDNAR-KRPVMLHRAILGSFERFIGMLIEHYAGVFPAWLAPTQAVIMNITDKQADFALQVEKSLNGSGF 566          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_THISH (Threonyl-tRNA synthetase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=thrS PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 8.900e-61
Identity = 115/228 (50.44%), Postives = 155/228 (67.98%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            ++ SYR+LPLR A+ G ++R E SGAL GL RVR F QDDAHIFCRE QI+ E+  +L+      + FGF  +++ LSTRP+K +G    WE A AAL  AL + G  + ++EG GAFYGPKIDI + DA+ R++QC+T+QLDF LP+RF + Y AED ++  RP+MIHRA+LGSVER F +L+EHY G +P WL+P Q  V  ++     YA +V D +   G   D
Sbjct:  345 RLHSYRDLPLRWAEMGTVYRREMSGALHGLMRVRGFTQDDAHIFCREDQIEAEILRILDLTLEVLQAFGFDDFDVNLSTRPDKAVGSDQIWEHATAALKAALEKKGLDYSVDEGGGAFYGPKIDIKIRDAIGREWQCSTVQLDFNLPERFEMEYVAEDNSR-RRPIMIHRALLGSVERFFGVLIEHYAGSFPLWLAPVQVQVLTITDRQDDYAREVADRLRNRGIRAD 571          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_PSEPF (Threonyl-tRNA synthetase OS=Pseudomonas fluorescens (strain Pf0-1) GN=thrS PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 8.900e-61
Identity = 115/224 (51.34%), Postives = 153/224 (68.30%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGY 691
            ++SYRELP+RLA+FG  HRNE SGAL G+ RVR F QDDAHIFC E Q++ E    ++     YR FGFT  E+KLSTRPEK +G    W++AEAAL  AL+  G P+ +  G+GAFYGPKI+ S+ D L R +QC TLQLDF LP R    Y +ED ++ + PVM+HRAILGS ER   IL+EHY+G +P WL+P QA++  ++     + +QV   +  +G+
Sbjct:  344 LKSYRELPMRLAEFGACHRNEPSGALHGIMRVRAFTQDDAHIFCTEEQMQAESAAFIKLTMDVYRDFGFTDVEMKLSTRPEKRVGSDELWDRAEAALAAALDSAGLPYDLQPGEGAFYGPKIEFSLKDCLGRVWQCGTLQLDFNLPVRLGAEYVSEDNSR-KHPVMLHRAILGSFERFVGILIEHYEGAFPAWLAPTQAVIMNITDKQADFVVQVEKTLNESGF 566          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_MAGSM (Threonyl-tRNA synthetase OS=Magnetococcus sp. (strain MC-1) GN=thrS PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 8.900e-61
Identity = 113/225 (50.22%), Postives = 158/225 (70.22%), Query Frame = 2
Query:   29 SYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            SYRELP R  + G ++R E SGAL GL RVR F QDDAHIFC E QI++E++ +L+      R +GF+ +E+ LSTRPEK +G  A W+KA  AL  A+      + ++EG GAFYGPKID+ ++D++ RK+QC+T+QLDF LP+RF++GY  ED  ++ RP+MIHRA++GS+ER F IL+EHY G +P WL+P QA+VC ++     YA  V   + +AG  V+
Sbjct:  349 SYRELPFRWGELGTVYRYEMSGALHGLFRVRGFTQDDAHIFCTEQQIEEEIQRILDLTLDILRTYGFSDFEINLSTRPEKSVGSAAIWDKATEALRRAIVSRDLSYVVDEGGGAFYGPKIDVKITDSIGRKWQCSTVQLDFNLPERFDMGYIGED-GESHRPIMIHRALMGSLERFFGILVEHYAGWFPMWLAPVQAVVCSITDAQHAYAETVLAALKKAGLRVE 572          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_DESDG (Threonyl-tRNA synthetase OS=Desulfovibrio desulfuricans (strain G20) GN=thrS PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 8.900e-61
Identity = 113/224 (50.45%), Postives = 153/224 (68.30%), Query Frame = 2
Query:   29 SYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            SYR+LP+RL + GV+HR+E SG L GL RVR+F QDDAHI C   Q++ E+ GVL F+     +FGF Y +++STRPEK +G    W++A +AL +AL   G P++INEGDGAFYGPKID+ + D L R++QCAT+Q DF LPDRF+L Y  +D  +  RPVM+HR ILGSVER   +L EH+ G +P WL+P QA +  V+     +A + R  +   G  V+
Sbjct:  346 SYRDLPVRLFELGVVHRHEKSGVLHGLLRVRQFTQDDAHIICTPDQLESEIVGVLNFVRDVMGVFGFEYSMEVSTRPEKSIGSDEDWDRATSALVKALEGQGLPYEINEGDGAFYGPKIDVKLRDCLGREWQCATVQCDFTLPDRFDLVYIGQD-GERHRPVMVHRVILGSVERFIGVLTEHFAGAFPTWLAPVQARLLTVTDAQNEFAEEARAALMAQGIRVE 568          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_CAMC1 (Threonyl-tRNA synthetase OS=Campylobacter concisus (strain 13826) GN=thrS PE=3 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.162e-60
Identity = 111/214 (51.87%), Postives = 153/214 (71.50%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQV 664
            +RSYR+LPL+  ++GV+HR+E SG L GL RVR F QDD+HIFC  SQIK+ +  +L+F       FGF YE+++ST+P K +G    W+ A  AL EAL+E G  + I+EG GAFYGPKIDI ++DALKRK+QC T+Q+DF LP+RF+LGY  +   + +RPVM+HRA+LGS ER   ILLEH  G+ PF+++P Q ++ P+S     YA ++
Sbjct:  315 IRSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFAQDDSHIFCMPSQIKENILEILKFAGTIMENFGFHYEMEISTKPAKAIGGDEIWDTATKALKEALDENGFKYGIDEGGGAFYGPKIDIKITDALKRKWQCGTIQVDFNLPERFDLGY-IDANNERQRPVMLHRALLGSFERFIGILLEHTAGELPFFIAPTQVVIVPISDAHLDYAKEI 527          
The following BLAST results are available for this feature:
BLAST of DN135274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_HELPY2.342e-6150.88Threonyl-tRNA synthetase OS=Helicobacter pylori GN... [more]
SYT_HELPH2.342e-6150.44Threonyl-tRNA synthetase OS=Helicobacter pylori (s... [more]
SYT_SYNS93.059e-6152.23Threonyl-tRNA synthetase OS=Synechococcus sp. (str... [more]
SYT_SULNB3.995e-6150.68Threonyl-tRNA synthetase OS=Sulfurovum sp. (strain... [more]
SYT_PSEPW5.217e-6151.34Threonyl-tRNA synthetase OS=Pseudomonas putida (st... [more]
SYT_THISH8.900e-6150.44Threonyl-tRNA synthetase OS=Thioalkalivibrio sp. (... [more]
SYT_PSEPF8.900e-6151.34Threonyl-tRNA synthetase OS=Pseudomonas fluorescen... [more]
SYT_MAGSM8.900e-6150.22Threonyl-tRNA synthetase OS=Magnetococcus sp. (str... [more]
SYT_DESDG8.900e-6150.45Threonyl-tRNA synthetase OS=Desulfovibrio desulfur... [more]
SYT_CAMC11.162e-6051.87Threonyl-tRNA synthetase OS=Campylobacter concisus... [more]

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Properties
Property NameValue
Genbank descriptionwca08h07 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135274 ID=DN135274; Name=DN135274; organism=Citrus sinensis; type=EST; length=701bp
TACGGCCGGGGTTTGNNNTAAGGTTCGTTCATACAGAGAACTACCTCTGC
GACTGGCTGATTTTGGGGTCTTGCATCGGAATGAAGCCAGTGGAGCACTC
ACTGGATTAACTCGTGTCAGGAGATTTCAGCAGGATGACGCTCATATTTT
CTGCAGGGAGTCCCAGATAAAAGACGAAGTAAGGGGTGTCCTAGAGTTCA
TTGATTATGCCTACAGAATATTCGGGTTCACATATGAGCTGAAGCTATCA
ACTAGGCCTGAAAAGTATCTTGGGGACTTGGCAACTTGGGAGAAAGCCGA
AGCTGCTCTTACAGAAGCATTGAATGAGTTTGGGAAGCCATGGCAGATAA
ATGAAGGGGATGGAGCATTTTATGGACCAAAGATTGATATCAGTGTATCT
GATGCATTGAAGAGGAAATTCCAGTGTGCTACTTTGCAGCTTGACTTTCA
GCTTCCTGATCGTTTCAACTTGGGTTACTCAGCGGAAGATGAAGCCAAGA
CAGAGAGACCTGTTATGATACACAGAGCGATATTGGGGTCTGTTGAACGT
ATGTTTGCTATACTGTTGGAACATTACAAGGGGAAGTGGCCTTTTTGGCT
CAGTCCACGTCAAGCAATTGTTTGCCCTGTGTCNNNGNAATCCCAACCAT
ATGCTTTACAGGTGCGGGATCATATTTATCGAGCCGGTTATTATGTTGAT
G
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