DN135274

Overview
NameDN135274
Unique NameDN135274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13572 contig Csv1_Contig13572:1203..1903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_PSEE4 (Threonyl-tRNA synthetase OS=Pseudomonas entomophila (strain L48) GN=thrS PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.417e-60
Identity = 113/224 (50.45%), Postives = 151/224 (67.41%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGY 691
            ++SYR+LPLRLA+FG  HRNE SGAL G+ RVR F QDDAHIFC E Q+K E    ++     Y+ FGFT   +KLSTRP K +G    W++AE AL +ALNE G  W+   G+GAFYGPKI+ ++ D L R +QC TLQ D  LP+R +  Y AED ++  RPVM+HRAILGS ER   +L+EHY G +P WL+P QA++  ++     +AL+V   +  +G+
Sbjct:  344 LKSYRDLPLRLAEFGACHRNEPSGALHGIMRVRGFVQDDAHIFCTEDQVKKEAADFIKLTLDVYKDFGFTDVAMKLSTRPAKRVGSEELWDRAEGALADALNESGLEWEYQPGEGAFYGPKIEFTLRDCLGRNWQCGTLQYDPNLPERLDASYIAEDNSRV-RPVMLHRAILGSFERFIGMLIEHYAGVFPAWLAPTQAVIMNITDKQADFALEVEKALNGSGF 566          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_PSE14 (Threonyl-tRNA synthetase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=thrS PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.417e-60
Identity = 115/224 (51.34%), Postives = 152/224 (67.86%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGY 691
            ++SYRELP+RLA+FG  HRNE SGAL G+ RVR F QDDAHIFC E Q++ E    ++     Y  FGF   ELKLSTRPEK +G    WE+AE AL  AL+  G P+ +  G+GAFYGPKI+ S+ D L R +QC TLQLDF LP R +  Y +ED ++ + PVM+HRAILGS ER   IL+EHY+G +P WL+P QA++  ++     +AL+V   +  +G+
Sbjct:  344 LKSYRELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEDQMQAESAAFIKLTLDVYADFGFKDIELKLSTRPEKRVGSDELWERAETALASALDSAGLPYDLQPGEGAFYGPKIEFSLKDCLGRVWQCGTLQLDFNLPIRLSAEYVSEDNSR-KNPVMLHRAILGSFERFIGILIEHYEGAFPAWLAPTQAVIMNITDKQADFALEVEKTLAESGF 566          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_NEOSM (Threonyl-tRNA synthetase OS=Neorickettsia sennetsu (strain Miyayama) GN=thrS PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.768e-60
Identity = 116/223 (52.02%), Postives = 152/223 (68.16%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAG 688
            ++SYR+LPLRLA+FG+ HRNEASGAL GL RVR F QDDAHIFC   QI DE       +   YR  GFT  E++ S RPE  LG+  TW+KAE AL  A+++ G  + +N G+GAFYGPKI+  + DALKRK+QC TLQ+DF LP+R +  Y  + E K + PVM+HRAILG+ ER   IL+EHY GK+P WL+P Q  V  ++   + YA  + +H+ + G
Sbjct:  347 LKSYRDLPLRLAEFGMCHRNEASGALHGLMRVRGFVQDDAHIFCTPQQICDETIAFCGLLKEVYRDLGFTEVEVRFSDRPEVRLGNDETWDKAEIALKSAMDKAGLIYTLNPGEGAFYGPKIEFVLVDALKRKWQCGTLQVDFVLPERLDATY-IDHEGKKQHPVMLHRAILGTFERFLGILIEHYDGKFPLWLAPTQVAVLTITEKVEEYAKSLLNHLSKTG 568          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_AZOSE (Threonyl-tRNA synthetase OS=Azoarcus sp. (strain EbN1) GN=thrS PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.768e-60
Identity = 118/227 (51.98%), Postives = 150/227 (66.08%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYEL-KLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            ++SYR+LPLR+A+FG  HRNE SGAL G+ RVR F QDDAHIFC + Q++ E    +E +   Y  FGFT  L KLSTRP+K +G    W+ AEAAL  AL+  G  + +  G+GAFYGPKI+ S+ D L R +QC TLQLDF LP R    Y AED AK   PVM+HRAILGS+ER   IL+EHY G  P WL+P  A+V  +S     YA +V   + +AG+ V+
Sbjct:  344 LKSYRDLPLRMAEFGSCHRNEPSGALHGIMRVRNFVQDDAHIFCADEQVQTEAAAFIELLQKVYADFGFTEILIKLSTRPDKRVGTDDQWDAAEAALAAALDAQGLAYDLQPGEGAFYGPKIEFSLKDCLNRVWQCGTLQLDFNLPVRLGAEYVAEDNAK-HYPVMLHRAILGSLERFIGILIEHYAGALPLWLAPVHAVVLNISEGQTDYATEVARRLKQAGFRVE 569          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_PSEU2 (Threonyl-tRNA synthetase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=thrS PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.534e-60
Identity = 114/224 (50.89%), Postives = 153/224 (68.30%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGY 691
            ++SYRELP+RLA+FG  HRNE SGAL G+ RVR F QDDAHIFC E Q++ E    ++     Y  FGF   ELKLSTRPEK +G    W++AE+AL  AL+  G P+ +  G+GAFYGPKI+ S+ D L R +QC TLQLDF LP R +  Y +ED ++ + PVM+HRAILGS ER   IL+EHY+G +P WL+P QA++  ++     +AL+V   +  +G+
Sbjct:  344 LKSYRELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEDQMQAESAAFIKLTLDVYADFGFKDIELKLSTRPEKRVGSDELWDRAESALASALDSAGLPYDLQPGEGAFYGPKIEFSLKDCLGRVWQCGTLQLDFNLPIRLSAEYVSEDNSR-KNPVMLHRAILGSFERFIGILIEHYEGAFPAWLAPTQAVIMNITDKQADFALEVEKTLAESGF 566          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_PSEPK (Threonyl-tRNA synthetase OS=Pseudomonas putida (strain KT2440) GN=thrS PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.840e-60
Identity = 112/224 (50.00%), Postives = 151/224 (67.41%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGY 691
            ++SYR+LPLRLA+FG  HRNE SGAL G+ RVR F QDDAHIFC E Q+K E    ++     Y+ FGF+   +KLSTRP K +G    W++AE AL +ALNE G  W+   G+GAFYGPKI+ ++ D L R +QC TLQ D  LP+R +  Y AED ++  RPVM+HRAILGS ER   +L+EHY G +P WL+P QA++  ++     +AL+V   +  +G+
Sbjct:  344 LKSYRDLPLRLAEFGACHRNEPSGALHGIMRVRGFVQDDAHIFCTEDQVKKEAADFIKLTLDVYKDFGFSDIAMKLSTRPAKRVGSEELWDRAETALADALNESGLEWEYQPGEGAFYGPKIEFTLRDCLGRNWQCGTLQYDPNLPERLDASYIAEDNSRV-RPVMLHRAILGSFERFIGMLIEHYAGVFPAWLAPTQAVIMNITDKQADFALEVEKSLNGSGF 566          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_PSEPG (Threonyl-tRNA synthetase OS=Pseudomonas putida (strain GB-1) GN=thrS PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.840e-60
Identity = 112/224 (50.00%), Postives = 151/224 (67.41%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGY 691
            ++SYR+LPLRLA+FG  HRNE SGAL G+ RVR F QDDAHIFC E Q+K E    ++     Y+ FGF+   +KLSTRP K +G    W++AE AL +ALNE G  W+   G+GAFYGPKI+ ++ D L R +QC TLQ D  LP+R +  Y AED ++  RPVM+HRAILGS ER   +L+EHY G +P WL+P QA++  ++     +AL+V   +  +G+
Sbjct:  344 LKSYRDLPLRLAEFGACHRNEPSGALHGIMRVRGFVQDDAHIFCTEEQVKKEAADFIKLTLDVYKDFGFSDIAMKLSTRPAKRVGSEELWDRAETALADALNESGLEWEYQPGEGAFYGPKIEFTLRDCLGRNWQCGTLQYDPNLPERLDASYIAEDNSRV-RPVMLHRAILGSFERFIGMLIEHYAGVFPAWLAPTQAVIMNITDKQADFALEVEKSLNGSGF 566          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_PSEP1 (Threonyl-tRNA synthetase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=thrS PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.840e-60
Identity = 112/224 (50.00%), Postives = 151/224 (67.41%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGY 691
            ++SYR+LPLRLA+FG  HRNE SGAL G+ RVR F QDDAHIFC E Q+K E    ++     Y+ FGF+   +KLSTRP K +G    W++AE AL +ALNE G  W+   G+GAFYGPKI+ ++ D L R +QC TLQ D  LP+R +  Y AED ++  RPVM+HRAILGS ER   +L+EHY G +P WL+P QA++  ++     +AL+V   +  +G+
Sbjct:  344 LKSYRDLPLRLAEFGACHRNEPSGALHGIMRVRGFVQDDAHIFCTEEQVKKEAADFIKLTLDVYKDFGFSDIAMKLSTRPAKRVGSEELWDRAETALADALNESGLEWEYQPGEGAFYGPKIEFTLRDCLGRNWQCGTLQYDPNLPERLDASYIAEDNSRV-RPVMLHRAILGSFERFIGMLIEHYAGVFPAWLAPTQAVIMNITDKQTDFALEVEKSLNGSGF 566          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_PSEAE (Threonyl-tRNA synthetase OS=Pseudomonas aeruginosa GN=thrS PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.840e-60
Identity = 114/224 (50.89%), Postives = 150/224 (66.96%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGY 691
            ++SYR+LPLRLA+FG  HRNE SGAL G+ RVR F QDDAHIFC E Q+K E    ++     YR FGFT   +KLSTRP K +G    W++AE AL +ALNE G  W+   G+GAFYGPKI+ ++ D L R +QC TLQ D  LP+R +  Y AED  + +RPVM+HRAILGS ER   +L+EHY G +P WL+P QA+V  ++     +A +V   +  +G+
Sbjct:  344 LKSYRDLPLRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEEQVKKEAADFIKLTLQVYRDFGFTDIAMKLSTRPAKRVGSDELWDRAEGALADALNESGLAWEYQPGEGAFYGPKIEFTLKDCLGRNWQCGTLQYDPNLPERLDASYIAEDNNR-KRPVMLHRAILGSFERFIGMLIEHYAGAFPAWLAPTQAVVMNITDKQADFAAEVVRILGESGF 566          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_PSEAB (Threonyl-tRNA synthetase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=thrS PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.840e-60
Identity = 114/224 (50.89%), Postives = 150/224 (66.96%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGY 691
            ++SYR+LPLRLA+FG  HRNE SGAL G+ RVR F QDDAHIFC E Q+K E    ++     YR FGFT   +KLSTRP K +G    W++AE AL +ALNE G  W+   G+GAFYGPKI+ ++ D L R +QC TLQ D  LP+R +  Y AED  + +RPVM+HRAILGS ER   +L+EHY G +P WL+P QA+V  ++     +A +V   +  +G+
Sbjct:  344 LKSYRDLPLRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEEQVKKEAADFIKLTLQVYRDFGFTDIAMKLSTRPAKRVGSDELWDRAEGALADALNESGLAWEYQPGEGAFYGPKIEFTLKDCLGRNWQCGTLQYDPNLPERLDASYIAEDNNR-KRPVMLHRAILGSFERFIGMLIEHYAGAFPAWLAPTQAVVMNITDKQADFAAEVVRILGESGF 566          
The following BLAST results are available for this feature:
BLAST of DN135274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_PSEE44.417e-6050.45Threonyl-tRNA synthetase OS=Pseudomonas entomophil... [more]
SYT_PSE144.417e-6051.34Threonyl-tRNA synthetase OS=Pseudomonas syringae p... [more]
SYT_NEOSM5.768e-6052.02Threonyl-tRNA synthetase OS=Neorickettsia sennetsu... [more]
SYT_AZOSE5.768e-6051.98Threonyl-tRNA synthetase OS=Azoarcus sp. (strain E... [more]
SYT_PSEU27.534e-6050.89Threonyl-tRNA synthetase OS=Pseudomonas syringae p... [more]
SYT_PSEPK9.840e-6050.00Threonyl-tRNA synthetase OS=Pseudomonas putida (st... [more]
SYT_PSEPG9.840e-6050.00Threonyl-tRNA synthetase OS=Pseudomonas putida (st... [more]
SYT_PSEP19.840e-6050.00Threonyl-tRNA synthetase OS=Pseudomonas putida (st... [more]
SYT_PSEAE9.840e-6050.89Threonyl-tRNA synthetase OS=Pseudomonas aeruginosa... [more]
SYT_PSEAB9.840e-6050.89Threonyl-tRNA synthetase OS=Pseudomonas aeruginosa... [more]

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Properties
Property NameValue
Genbank descriptionwca08h07 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135274 ID=DN135274; Name=DN135274; organism=Citrus sinensis; type=EST; length=701bp
TACGGCCGGGGTTTGNNNTAAGGTTCGTTCATACAGAGAACTACCTCTGC
GACTGGCTGATTTTGGGGTCTTGCATCGGAATGAAGCCAGTGGAGCACTC
ACTGGATTAACTCGTGTCAGGAGATTTCAGCAGGATGACGCTCATATTTT
CTGCAGGGAGTCCCAGATAAAAGACGAAGTAAGGGGTGTCCTAGAGTTCA
TTGATTATGCCTACAGAATATTCGGGTTCACATATGAGCTGAAGCTATCA
ACTAGGCCTGAAAAGTATCTTGGGGACTTGGCAACTTGGGAGAAAGCCGA
AGCTGCTCTTACAGAAGCATTGAATGAGTTTGGGAAGCCATGGCAGATAA
ATGAAGGGGATGGAGCATTTTATGGACCAAAGATTGATATCAGTGTATCT
GATGCATTGAAGAGGAAATTCCAGTGTGCTACTTTGCAGCTTGACTTTCA
GCTTCCTGATCGTTTCAACTTGGGTTACTCAGCGGAAGATGAAGCCAAGA
CAGAGAGACCTGTTATGATACACAGAGCGATATTGGGGTCTGTTGAACGT
ATGTTTGCTATACTGTTGGAACATTACAAGGGGAAGTGGCCTTTTTGGCT
CAGTCCACGTCAAGCAATTGTTTGCCCTGTGTCNNNGNAATCCCAACCAT
ATGCTTTACAGGTGCGGGATCATATTTATCGAGCCGGTTATTATGTTGAT
G
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