DN135270

Overview
NameDN135270
Unique NameDN135270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1201 contig Csv1_Contig1201:244..931. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135270 vs. ExPASy Swiss-Prot
Match: ERG25_MOUSE (C-4 methylsterol oxidase OS=Mus musculus GN=Sc4mol PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 39/113 (34.51%), Postives = 61/113 (53.98%), Query Frame = 2
Query:  350 LVMDTWQYFMHRYMHHNKFLYRHIHSLHHRLVVPYAFGALYNHPIEGLLNDTIGGALSFLVSGMSPRVSIFFFSFATIK---TVDDHCGLWLPGN-LFHVFFXXNTAYHDIHH 676
            ++ DTW YF+HR +HH + +Y++IH +HH    P+   A Y HP+E L+   +G      +  +   V I  +++ TI+   T+D H G  +P N L  V F     +HD HH
Sbjct:  147 VIEDTWHYFLHRLLHHKR-IYKYIHKVHHEFQAPFGIEAEYAHPLETLI---LGTGFFIGIVLLCDHV-ILLWAWVTIRLLETIDVHSGYDIPLNPLNLVPFYTGARHHDFHH 254          
BLAST of DN135270 vs. ExPASy Swiss-Prot
Match: ERG25_CHICK (C-4 methylsterol oxidase OS=Gallus gallus GN=SC4MOL PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.130e-11
Identity = 38/113 (33.63%), Postives = 60/113 (53.10%), Query Frame = 2
Query:  350 LVMDTWQYFMHRYMHHNKFLYRHIHSLHHRLVVPYAFGALYNHPIEGLLNDTIGGALSFLVSGMSPRVSIFFFSFA---TIKTVDDHCGLWLPGNLFH-VFFXXNTAYHDIHH 676
            ++ D W YF+HR +HH + +Y++IH +HH  V P+   A Y HP+E L    I GA  F+   +     +  +++     ++T+D H G  +P N  H V F     +HD HH
Sbjct:  147 VIEDAWHYFLHRLLHHKR-IYKYIHKVHHEFVSPFGMQAEYAHPLETL----ILGAGFFIGIVVFCNHVVLLWAWVICRLMETIDVHSGYDIPLNPLHLVPFYAGARFHDFHH 254          
The following BLAST results are available for this feature:
BLAST of DN135270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ERG25_MOUSE1.631e-1134.51C-4 methylsterol oxidase OS=Mus musculus GN=Sc4mol... [more]
ERG25_CHICK2.130e-1133.63C-4 methylsterol oxidase OS=Gallus gallus GN=SC4MO... [more]

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Properties
Property NameValue
Genbank descriptionwca08h02 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135270 ID=DN135270; Name=DN135270; organism=Citrus sinensis; type=EST; length=687bp
CCGGGGGAGCGAGTGTCCCGTTGGCGATCGTCACACGATGGCGTTTACGA
TTTCCGACGAATTGTTGGGCACTTTCGTCCCAATTTTAGTCTATTGGTTG
TATTCAGGATTATACGTCGTTCTTGGATCTTTTGATAAGCTTGATAATTA
TAGATTGCATTCGAGAATTGACGAGGACGAGAAAAATTTGGTCTCTAAGG
GCGATGTCGTTAAAGGCGTTCTCCTTCAGCAATTTTTTCAGGCTATTGTT
GCAATTCTCTTGTTTGCGGTGACAGGAAATGGTGCTGGGGCAGAAGCCAA
TCAACAGTCTTCCCCAATTGCTATAGCTCGGCAGTTTGTTATAGCAATGT
TGGTTATGGATACATGGCAGTATTTTATGCACAGGTACATGCACCACAAC
AAGTTTTTGTATCGACACATCCATTCTCTACATCACCGCCTTGTTGTCCC
CTATGCATTTGGAGCTTTGTATAATCACCCCATTGAGGGGCTTCTTAATG
ACACAATTGGCGGAGCCTTATCCTTTCTCGTTTCCGGTATGTCTCCCCGA
GTCTCCATCTTCTTCTTTTCCTTTGCCACCATCAAAACAGTGGATGACCA
CTGTGGATTATGGCTTCCTGGAAACCTCTTCCACGTGTTCTTCAANNACA
ACACTGCCTATCATGATATCCACCATCAACTTTATGG
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