DN135233

Overview
NameDN135233
Unique NameDN135233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN135233_ssr641 microsatellite DN135233_ssr641:641..652. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13714 contig Csv1_Contig13714:422..1128. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135233 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.402e-45
Identity = 92/148 (62.16%), Postives = 111/148 (75.00%), Query Frame = 3
Query:  111 RRTNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 554
            RR+NVFDP + D WDPFDG   S +    +S R+T+ FANAR+DWKETP++HVFKADLPG++          G +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKASMENGVLTVT            AIEISG
Sbjct:    5 RRSNVFDPFA-DFWDPFDGVFRSLVP--ATSDRDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPEVKAIEISG 149          
BLAST of DN135233 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.832e-45
Identity = 94/145 (64.83%), Postives = 115/145 (79.31%), Query Frame = 3
Query:   81 MSLIPSIF--GGRRTNVFDPVSLD-VWDPFDGFLSSALTNAPSS--ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 500
            MSLIP+ +   GRR+N+FDP SLD +WDPF G L S L+  P S  A ET+ FANARIDWKETP+AHVFKADLPG++          G +L+ISG+R++E+EEKND WHRVERSSG+F+R+FRLP+NAKV+QVKA MENGVLTVT
Sbjct:    1 MSLIPNNWFNTGRRSNIFDPFSLDEIWDPFFG-LPSTLSTVPRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVLTVT 144          
BLAST of DN135233 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.960e-45
Identity = 93/155 (60.00%), Postives = 108/155 (69.68%), Query Frame = 3
Query:  111 RRTNVFDPVSLDVWDPFDGF-------LSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 554
            RR N FDP SLD+WDP DGF        SS+ +  P +  + + FA ARIDWKETP+ HVFKAD+PGL+          G ILQISGERS+EQEEK+DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT            +I+ISG
Sbjct:    5 RRGNAFDPFSLDLWDPVDGFPFGSGGSSSSSGSLFPRANSDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQISG 159          
BLAST of DN135233 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.090e-45
Identity = 96/161 (59.63%), Postives = 117/161 (72.67%), Query Frame = 3
Query:   81 MSLIPSIFGGRRTN-VFDPVSLDVWDPFD--GFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 554
            MSLIP IFG RR++ +FDP S+DV+DPF   GF S+       ++ E+S FAN RIDWKETP+ HVFK DLPGL+           R+LQISGER+ E+E+KNDKWHR+ERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT            +IEISG
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPST-------NSGESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVKKPEVKSIEISG 154          
BLAST of DN135233 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.645e-44
Identity = 91/159 (57.23%), Postives = 111/159 (69.81%), Query Frame = 3
Query:   81 MSLIPSIFGG-RRTNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 554
            MS+IPS F   RR+N+FDP SLDVWDPF    SS+L+      RE S   NAR+DW+ETP+AHVFKADLPGL+            +L+ISGER  E+E+KND WHRVERSSG+F RRFRLP+N K++QVKA+MENGVLTVT            +I+ISG
Sbjct:    1 MSMIPSFFNNNRRSNIFDPFSLDVWDPFKELTSSSLS------RENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKAETKKADVKSIQISG 153          
BLAST of DN135233 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.233e-42
Identity = 89/149 (59.73%), Postives = 109/149 (73.15%), Query Frame = 3
Query:  111 RRTNVFDPVSLDVW-DPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 554
            RR+NVFDP + D+W DPFD F S     +  S+ ET+ FANAR+DWKETP+AHVFK DLPG++          G +L +SGERS+E+E+KNDKWHRVERSSGKF+RRFRLP++AKVE+VKA +ENGVLTVT            AIEISG
Sbjct:    5 RRSNVFDPFA-DLWADPFDTFRSIVPAISGGSS-ETAAFANARVDWKETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 151          
BLAST of DN135233 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.407e-42
Identity = 85/142 (59.86%), Postives = 104/142 (73.24%), Query Frame = 3
Query:  129 DPVSLDVWDPFDGF-LSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEIS 551
            DP SLDVWDPF  F  +++  +A S  +E S F + RIDWKETP+AHVFKADLPGL+           R+LQISGER+ E+E+KND+WHRVERSSGKF+RRFRLP+NAK++QVKA+MENGVLTVT            +IEIS
Sbjct:    1 DPFSLDVWDPFKDFPFTNSALSASSFPQENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEIKKPEVKSIEIS 142          
BLAST of DN135233 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.737e-41
Identity = 88/149 (59.06%), Postives = 107/149 (71.81%), Query Frame = 3
Query:  111 RRTNVFDPVSLDVW-DPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 554
            RRTNVFDP + D+W DPFD F  S +        ET+ FANAR+DWKETP+AHVFKADLPG++          G +L +SGER+KE+E+KNDKWHRVERSSGKF+RRFRL ++AKVE+VKA +ENGVLTVT            AI+ISG
Sbjct:    5 RRTNVFDPFA-DLWADPFDTF-RSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151          
BLAST of DN135233 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.741e-40
Identity = 84/142 (59.15%), Postives = 100/142 (70.42%), Query Frame = 3
Query:   81 MSLIPSIFGGRR--TNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 500
            MSLIPS FG  R   ++FDP SLDVWDPF       L    S + ETS   NAR+DWKET +AHVFKADLPG++            +L+ISGER  E+EEK D WHRVERSSG+F R+F+LP+N K++QVKASMENGVLTVT
Sbjct:    1 MSLIPSFFGNNRRSNSIFDPFSLDVWDPF-----KELQFPSSLSGETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVLTVT 137          
BLAST of DN135233 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.150e-39
Identity = 86/143 (60.14%), Postives = 100/143 (69.93%), Query Frame = 3
Query:   81 MSLIPSIFGGRR---TNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 500
            MSLIPS FG  R    N+FDP SLDVWDPF           PSS+  +S  ANAR+DWKET +AHVFKADLPG++            +L+ISGER  E+EEK D WHRVERSSG F R+FRLP+N K++QVKASMENGVLTVT
Sbjct:    1 MSLIPSFFGNNRRINNNIFDPFSLDVWDPFKEL------QFPSSS--SSAIANARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVLTVT 135          
The following BLAST results are available for this feature:
BLAST of DN135233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS16C_ORYSJ1.402e-4562.1616.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HSP11_CHERU1.832e-4564.8318.3 kDa class I heat shock protein OS=Chenopodium... [more]
HS177_ORYSJ6.960e-4560.0017.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_SOLLC9.090e-4559.6317.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HS17B_ARATH2.645e-4457.2317.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HS16A_WHEAT3.233e-4259.7316.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HSP11_MEDSA9.407e-4259.8618.1 kDa class I heat shock protein (Fragment) OS=... [more]
HS16B_WHEAT2.737e-4159.0616.9 kDa class I heat shock protein 2 OS=Triticum ... [more]
HS178_ARATH6.741e-4059.1517.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17A_ARATH1.150e-3960.1417.6 kDa class I heat shock protein 1 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionwca08c06 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08c06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135233 ID=DN135233; Name=DN135233; organism=Citrus sinensis; type=EST; length=708bp
TACGGCCGGGGANNTTCAATTGATTGATCAAAGCATTTCCGAAGTTGTTG
AGCATTTAATTAGCGTCCCAGTTTGCCATAATGTCACTCATTCCAAGCAT
CTTCGGTGGCCGAAGAACCAACGTGTTCGATCCAGTTTCATTAGATGTAT
GGGATCCTTTCGACGGGTTCTTGTCCTCTGCCCTTACCAACGCGCCGTCT
TCGGCTAGGGAAACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAGA
GACTCCTCAGGCTCACGTATTCAAAGCTGATCTTCCAGGGCTGAGGAAAG
AAGAAGTAAAAGTTGAGGTTGAAGAGGGCAGGATTCTGCAGATAAGCGGA
GAGAGGAGCAAGGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCGA
GAGGAGCAGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGCTA
AGGTGGAACAGGTTAAGGCCAGCATGGAGAATGGTGTGCTCACAGTCACC
GTTCCTAAACAGGAGGAGAAGAAACCTGAAGTTAAGGCTATTGAGATCTC
TGGCTAAGTGATAACTGTAAATGTTTTCAAGATAGTGTCTTTGGTTTGCT
AATAAATTTGGTACGAAAGCAAAGCCCTTGTGTGTTTGTATGTGTGTGTG
TGTTTGTTTTCTTCCCTTCCCCCTGTTTAATTTGATGTGATTATGTTTGT
GTGTTTGC
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