DN135233

Overview
NameDN135233
Unique NameDN135233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN135233_ssr641 microsatellite DN135233_ssr641:641..652. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13714 contig Csv1_Contig13714:422..1128. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135233 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.839e-30
Identity = 76/151 (50.33%), Postives = 90/151 (59.60%), Query Frame = 3
Query:  111 RRTNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEE--KND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 554
            R  NV DP+S+D W   D F +       S A       N R+DWKETP AHVF ADLPG+R          G +L ISGER++E++   KND +WH VERSSGKF RRFRLP  A+V+QV ASM+NGVLTVT            AI ISG
Sbjct:    5 RSGNVLDPMSVDFWADADPFGA-----VRSLAERCPVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPKEETKKPQLKAIPISG 150          
BLAST of DN135233 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.540e-26
Identity = 60/134 (44.78%), Postives = 86/134 (64.18%), Query Frame = 3
Query:  105 GGRRTNVFDPVSLDVWDPF-DGFLSSALTNAPSSARETSQF-ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 500
            GG      +PVS+D+ +PF D    +A   APS+A   +   + A +DWKET  AHVF AD+PG+R           ++L+ISG+R++  EEK ++WHRVERSS +F+R  RLP NA  + V A+++NGVLT+T
Sbjct:   26 GGGGGGEIEPVSVDIMEPFMDAISLTAFAAAPSAAAAAAGVPSTASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVLTIT 159          
BLAST of DN135233 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.125e-25
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = 3
Query:  231 ARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 500
            AR+DWKETP+ HV   D+PGL+           R+L++SGER KE+E+K D WHRVERS GKF R+FRLP N  ++ VKA +ENGVLT+T
Sbjct:   67 ARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVLTLT 156          
BLAST of DN135233 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.125e-25
Identity = 50/92 (54.35%), Postives = 67/92 (72.83%), Query Frame = 3
Query:  225 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 500
            ++AR+DWKETP+ HV   D+PGL+           R+L++SGER KE+++K D WHRVERS GKF R+F+LP N  ++ VKA MENGVLT+T
Sbjct:   73 SHARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVLTLT 164          
BLAST of DN135233 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.390e-23
Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = 3
Query:  207 RETS-QFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 497
            R+TS   + AR+DWKET + H    D+PGL+            +L++SGER +E+E+K D+WHRVERS GKF R+F+LPDN  +E VKA +ENGVLT+
Sbjct:   62 RDTSVALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVLTI 159          
BLAST of DN135233 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.668e-22
Identity = 54/74 (72.97%), Postives = 59/74 (79.73%), Query Frame = 3
Query:  333 ILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 554
            ILQISGER+ E+E+KND WHRVERSSGKF+R FRLPDNAKV+QVKASMENGVLTVT            AIEISG
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of DN135233 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.279e-22
Identity = 56/127 (44.09%), Postives = 81/127 (63.78%), Query Frame = 3
Query:  123 VFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLP-GLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 500
            +FD ++ D W+PF  F ++   +A   A +TS FAN  I+ +ET +A+VF+ADLP G++          G +L I+GERS  +EEK  + H +ERS   F  RF LPD+A V+ V+ASM+ G+LTVT
Sbjct:    6 LFDTLAFDAWNPFSIFGTTVAADA-WLASDTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGMLTVT 131          
BLAST of DN135233 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.560e-19
Identity = 62/158 (39.24%), Postives = 88/158 (55.70%), Query Frame = 3
Query:   48 LSI*LASQFAIMSLIPSIFGG--RRTNVFDPVSLDVWDPFDGFLSSALTNAPSS--ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQ--EEKN--DKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 497
            +++ LAS  A  +L+P   GG  R   V +   L   DPF       L + P      + +  + AR+DW+ET  AH    D+PG+R           R+L+ISGER +E+  E+K   D WHR ERS G+F R+ RLPDNA ++ + AS++NGVLTV
Sbjct:   16 IAVVLASTAADGALLPWFGGGGARDEAVPELGLLAAADPF-----RILEHVPFGFDRDDVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVLTV 168          
BLAST of DN135233 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.493e-18
Identity = 50/111 (45.05%), Postives = 72/111 (64.86%), Query Frame = 3
Query:  192 APSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXG-RILQISGER-----SKEQEEKND--KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 500
            A ++A E +  A AR DWKETP+AHV   D+PG+R            R+L++SGER     ++E+E + D  +WHR ER++G+F RRFR+P  A V +V A +++GVLTVT
Sbjct:   59 AAAAAGEPAAVALARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDGVLTVT 169          
BLAST of DN135233 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.788e-16
Identity = 44/106 (41.51%), Postives = 63/106 (59.43%), Query Frame = 3
Query:  189 NAPSS--ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 500
            NAPS    R+    A    D KE P ++VF  D+PGL+            +L ISGER +E+E++  K+ R+ER  GKF+R+F LP+NA  + + A  ++GVLTVT
Sbjct:   30 NAPSKIYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVT 135          
The following BLAST results are available for this feature:
BLAST of DN135233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS166_ORYSJ2.839e-3050.3316.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS189_ORYSJ5.540e-2644.7818.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP41_SOYBN6.125e-2556.6722.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP41_PEA6.125e-2554.3522.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP22_ARATH4.390e-2351.0222.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HSP12_SOYBN1.668e-2272.97Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS17B_ORYSJ8.279e-2244.0917.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HS232_ORYSJ6.560e-1939.2423.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS219_ORYSJ2.493e-1845.0521.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP21_SOLPE6.788e-1641.5117.3 kDa class II heat shock protein OS=Solanum pe... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionwca08c06 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08c06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135233 ID=DN135233; Name=DN135233; organism=Citrus sinensis; type=EST; length=708bp
TACGGCCGGGGANNTTCAATTGATTGATCAAAGCATTTCCGAAGTTGTTG
AGCATTTAATTAGCGTCCCAGTTTGCCATAATGTCACTCATTCCAAGCAT
CTTCGGTGGCCGAAGAACCAACGTGTTCGATCCAGTTTCATTAGATGTAT
GGGATCCTTTCGACGGGTTCTTGTCCTCTGCCCTTACCAACGCGCCGTCT
TCGGCTAGGGAAACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAGA
GACTCCTCAGGCTCACGTATTCAAAGCTGATCTTCCAGGGCTGAGGAAAG
AAGAAGTAAAAGTTGAGGTTGAAGAGGGCAGGATTCTGCAGATAAGCGGA
GAGAGGAGCAAGGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCGA
GAGGAGCAGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGCTA
AGGTGGAACAGGTTAAGGCCAGCATGGAGAATGGTGTGCTCACAGTCACC
GTTCCTAAACAGGAGGAGAAGAAACCTGAAGTTAAGGCTATTGAGATCTC
TGGCTAAGTGATAACTGTAAATGTTTTCAAGATAGTGTCTTTGGTTTGCT
AATAAATTTGGTACGAAAGCAAAGCCCTTGTGTGTTTGTATGTGTGTGTG
TGTTTGTTTTCTTCCCTTCCCCCTGTTTAATTTGATGTGATTATGTTTGT
GTGTTTGC
back to top