DN135233

Overview
NameDN135233
Unique NameDN135233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN135233_ssr641 microsatellite DN135233_ssr641:641..652. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13714 contig Csv1_Contig13714:422..1128. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135233 vs. ExPASy Swiss-Prot
Match: HS157_ARATH (15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana GN=HSP15.7 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15
Identity = 42/96 (43.75%), Postives = 58/96 (60.42%), Query Frame = 3
Query:  225 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSS-----GKFLRRFRLPDNAKVEQVKASMENGVLTV 497
            + A IDW E+  +H+FK ++PG            G +L I GE  KE++++N  WH  ER +      +FLRR  LP+N KV+QVKA +ENGVLTV
Sbjct:   20 STALIDWMESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLVWHVAEREAFSGGGSEFLRRIELPENVKVDQVKAYVENGVLTV 115          
BLAST of DN135233 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.400e-15
Identity = 51/125 (40.80%), Postives = 67/125 (53.60%), Query Frame = 3
Query:  141 LDVWDPFDGFLSSALTNAPSSA-----RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 500
            LDV D   G      T +  SA     R+    A    D KE P A+ F  D+PGL            R+L +SGER +E+ E + K+ R+ER  GKF+R+F LPDNA V++V A   +GVLTVT
Sbjct:   20 LDVPDGDAGAGGDNKTGSGGSATRTYVRDARAMAATPADVKELPGAYAFVVDMPGLGTGDIRVQVEDERVLVVSGERRREEREDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVT 144          
BLAST of DN135233 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.672e-14
Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = 3
Query:  189 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 500
            NAP+    R+    A    D KE P ++VF  D+PG++            +L ISGER +E+E++  K+ ++ER  GK +R+F LP+NA +E + A  ++GVLTVT
Sbjct:   27 NAPTRTYVRDAKAMAATPADVKEHPNSYVFMVDMPGVKSGDIKVQVEDENVLLISGERKREEEKEGVKYLKMERRIGKLMRKFVLPENANIEAISAISQDGVLTVT 132          
BLAST of DN135233 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 40/106 (37.74%), Postives = 65/106 (61.32%), Query Frame = 3
Query:  189 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 500
            + PS A  R+    A    D KE P ++VF  D+PGL+            +L ISG+R++E+E++  K+ R+ER  GKF+++F LP++A  +++ A  ++GVLTVT
Sbjct:   35 SGPSRAYVRDARAMAATPADVKECPNSYVFIVDMPGLKSGDIKVQVERDNVLVISGKRNREEEKEGVKYVRMERRMGKFMKKFALPEDANTDKISAICQDGVLTVT 140          
BLAST of DN135233 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 45/111 (40.54%), Postives = 66/111 (59.46%), Query Frame = 3
Query:  186 TNAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSK----EQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 500
            T  P+ A  R+    A    D K+ P A+ F  D+PGL+           R+L ISGER +    E++E++ K+ R+ER  GKF+R+F LPDNA V+++ A  ++GVLTVT
Sbjct:   36 TGGPTRAYVRDARAMAATPADVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVLTVT 146          
BLAST of DN135233 vs. ExPASy Swiss-Prot
Match: HSP21_SOYBN (17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 42/115 (36.52%), Postives = 65/115 (56.52%), Query Frame = 3
Query:  162 DGFLSSALTNAP--SSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 500
            DG   +   NAP  S  R+    A    D KE P ++VF+ D+PGL+            +L I GER +++E++  K+ R+ER  GK +R+F LP+NA  + + A  ++GVL+VT
Sbjct:   25 DGAGDNKTHNAPTWSYVRDAKAMAATPADVKEYPNSYVFEIDMPGLKSGDIKVQVEDDNLLLICGERKRDEEKEGAKYLRMERRVGKLMRKFVLPENANTDAISAVCQDGVLSVT 139          
BLAST of DN135233 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 45/111 (40.54%), Postives = 64/111 (57.66%), Query Frame = 3
Query:  177 SALTNAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 500
            S+ ++APS     +    A    D KE P ++VF  D+PGL+            +L ISGER +E EEK   K+ R+ER  GK +R+F LP+NA  E++ A  ++GVLTVT
Sbjct:   25 SSNSSAPSRTFMLDAKAMAATPADVKEYPNSYVFIIDMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDGVLTVT 135          
BLAST of DN135233 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:  207 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKND--KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 500
            R+    A    D KE P ++VF AD+PG++            +L +SGER++ ++++ D  K+ R+ER  GKF+R+F LP+NA VE + A  ++GVL VT
Sbjct:   48 RDAKAMAATPADVKEYPNSYVFIADMPGVKAAEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERRVGKFMRKFVLPENANVEAINAVYQDGVLQVT 147          
BLAST of DN135233 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 43/98 (43.88%), Postives = 57/98 (58.16%), Query Frame = 3
Query:  207 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 500
            R+    A    D KE   A+ F  D+PGL            R+L ISGER +E+ E + K+ R+ER  GKF+R+F LPDNA V++V A   +GVLTVT
Sbjct:   38 RDARAMAATPADVKELAGAYAFVVDMPGLSTGDIRVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVT 134          
BLAST of DN135233 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  240 DWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 500
            D KE P A+ F  D+PGL            R+L ISGER +E+ E + K+ R+ER  GKF+R+F LPDNA ++++ A   +GVLTVT
Sbjct:   56 DVKELPGAYAFVVDMPGLGTGDIKVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVLTVT 141          
The following BLAST results are available for this feature:
BLAST of DN135233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS157_ARATH1.512e-1543.7515.7 kDa heat shock protein, peroxisomal OS=Arabid... [more]
HSP22_MAIZE4.400e-1540.8017.8 kDa class II heat shock protein OS=Zea mays P... [more]
HSP21_PEA1.672e-1438.6817.1 kDa class II heat shock protein OS=Pisum sati... [more]
HSP21_HELAN3.725e-1437.7417.9 kDa class II heat shock protein OS=Helianthus... [more]
HSP18_ORYSJ3.725e-1440.5418.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP21_SOYBN6.354e-1436.5217.9 kDa class II heat shock protein OS=Glycine ma... [more]
HSP21_IPONI1.849e-1340.5417.2 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP22_IPONI2.414e-1339.0018.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP23_MAIZE5.379e-1343.8817.0 kDa class II heat shock protein OS=Zea mays G... [more]
HSP21_MAIZE5.379e-1345.9817.5 kDa class II heat shock protein OS=Zea mays P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionwca08c06 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08c06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135233 ID=DN135233; Name=DN135233; organism=Citrus sinensis; type=EST; length=708bp
TACGGCCGGGGANNTTCAATTGATTGATCAAAGCATTTCCGAAGTTGTTG
AGCATTTAATTAGCGTCCCAGTTTGCCATAATGTCACTCATTCCAAGCAT
CTTCGGTGGCCGAAGAACCAACGTGTTCGATCCAGTTTCATTAGATGTAT
GGGATCCTTTCGACGGGTTCTTGTCCTCTGCCCTTACCAACGCGCCGTCT
TCGGCTAGGGAAACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAGA
GACTCCTCAGGCTCACGTATTCAAAGCTGATCTTCCAGGGCTGAGGAAAG
AAGAAGTAAAAGTTGAGGTTGAAGAGGGCAGGATTCTGCAGATAAGCGGA
GAGAGGAGCAAGGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCGA
GAGGAGCAGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGCTA
AGGTGGAACAGGTTAAGGCCAGCATGGAGAATGGTGTGCTCACAGTCACC
GTTCCTAAACAGGAGGAGAAGAAACCTGAAGTTAAGGCTATTGAGATCTC
TGGCTAAGTGATAACTGTAAATGTTTTCAAGATAGTGTCTTTGGTTTGCT
AATAAATTTGGTACGAAAGCAAAGCCCTTGTGTGTTTGTATGTGTGTGTG
TGTTTGTTTTCTTCCCTTCCCCCTGTTTAATTTGATGTGATTATGTTTGT
GTGTTTGC
back to top