CN189199
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189199 vs. ExPASy Swiss-Prot
Match: RBS_ANASP (Ribulose bisphosphate carboxylase small chain OS=Anabaena sp. (strain PCC 7120) GN=cbbS PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.949e-19 Identity = 43/111 (38.74%), Postives = 67/111 (60.36%), Query Frame = 3 Query: 222 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 554 +++ETLSYLPPL+D + K++ Y++ G+IP +EF YWT+WKLP++G + +VL EV + +YP ++R++GFDN +Q Q +SFI KP Sbjct: 8 RRYETLSYLPPLTDVQIEKQVQYILSQGYIPAVEFN------------EVSEPTELYWTLWKLPLFGAKTSREVLAEVQSCRSQYPGHYIRVVGFDNIKQCQILSFIVHKP 106
BLAST of CN189199 vs. ExPASy Swiss-Prot
Match: RBS_CYAPA (Ribulose bisphosphate carboxylase small chain OS=Cyanophora paradoxa GN=rbcS PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.154e-18 Identity = 38/111 (34.23%), Postives = 68/111 (61.26%), Query Frame = 3 Query: 222 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 554 +KFET SYLPPL+D+ + +++ Y + +G+ P +EF G + WT+WKLP++G +VL E+ ++++P++++R++ FD+ RQVQ + F+ KP Sbjct: 7 RKFETFSYLPPLNDQQIARQLQYALSNGYSPAIEFSFT------------GKAEDLVWTLWKLPLFGAQSPEEVLSEIQACKQQFPNAYIRVVAFDSIRQVQTLMFLVYKP 105
BLAST of CN189199 vs. ExPASy Swiss-Prot
Match: RBS2_THIFE (Ribulose bisphosphate carboxylase small chain 2 OS=Thiobacillus ferrooxidans GN=cbbS2 PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.675e-18 Identity = 44/106 (41.51%), Postives = 60/106 (56.60%), Query Frame = 3 Query: 225 KFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFI 542 KFETLSYLP L+ + + +++ Y++ GW P +E H P G YW MWKLPM+G TD +LKE K PH+ VRI+G+DN +Q Q S + Sbjct: 18 KFETLSYLPALTADEIRQQVAYIVSKGWNPAVE------------HTEPENAFGNYWYMWKLPMFGETDVDTILKEAERCHKRNPHNHVRIVGYDNFKQSQGTSLV 111
BLAST of CN189199 vs. ExPASy Swiss-Prot
Match: RBS_PSEHY (Ribulose bisphosphate carboxylase small chain OS=Pseudomonas hydrogenothermophila GN=cbbS PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.182e-16 Identity = 40/111 (36.04%), Postives = 62/111 (55.86%), Query Frame = 3 Query: 222 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 554 K+FET SYLP +S E + K+I Y++ GW P +E H P YW MWKLPM+G TD +++ E+ ++ P+ +++IG+DN RQ Q + + +P Sbjct: 24 KRFETFSYLPQMSAEEIRKQIEYIVSKGWNPAIE------------HCEPENAILHYWYMWKLPMFGETDVDKIIAEIEACKRSNPNHLIKLIGYDNIRQTQGTAMLVYRP 122
BLAST of CN189199 vs. ExPASy Swiss-Prot
Match: RBS1_CHRVI (Ribulose bisphosphate carboxylase small chain 1 OS=Chromatium vinosum GN=cbbS1 PE=1 SV=4) HSP 1 Score: 84.7297 bits (208), Expect = 4.492e-16 Identity = 40/100 (40.00%), Postives = 55/100 (55.00%), Query Frame = 3 Query: 222 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQ 521 +KFET SYLP + + + K++ Y++ GW P +E H P YW MWKLPM+G TD +LKE K +P++ VR+IGFDN Q Sbjct: 17 RKFETFSYLPRMDADRIRKQVEYIVSKGWNPAIE------------HTEPENAFDHYWYMWKLPMFGETDIDTILKEAEACHKAHPNNHVRLIGFDNYAQ 104
BLAST of CN189199 vs. ExPASy Swiss-Prot
Match: RBS_ALVHS (Ribulose bisphosphate carboxylase small chain OS=Alvinoconcha hessleri symbiotic bacterium GN=cbbS PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 5.867e-16 Identity = 42/112 (37.50%), Postives = 57/112 (50.89%), Query Frame = 3 Query: 222 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 557 +KFET SYLP L E + K++ Y++ GW P +E H P YW MWKLPM+G TD +L E K +P VR+IG+DN Q Q + + + P Sbjct: 17 RKFETFSYLPELGVEKIRKQVEYIVSKGWNPAVE------------HTEPENAFDHYWYMWKLPMFGETDVDAILAEAEACHKAHPSHHVRLIGYDNYAQSQGTAMVIFRGP 116
BLAST of CN189199 vs. ExPASy Swiss-Prot
Match: RBS_THIDA (Ribulose bisphosphate carboxylase small chain OS=Thiobacillus denitrificans (strain ATCC 25259) GN=cbbS PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.912e-15 Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = 3 Query: 222 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 527 +KFET SYLP ++ + K++ YL+ GW P +E H P + YW MWKLPM+G TD ++L E K P++ VR++G+DN Q Q Sbjct: 17 RKFETFSYLPAMNAADIRKQVEYLVSKGWNPAIE------------HTEPEHLMDSYWYMWKLPMFGETDIDRILGEAEACHKANPNNHVRLVGYDNFAQSQ 106
BLAST of CN189199 vs. ExPASy Swiss-Prot
Match: RBS2_ACECL (Ribulose bisphosphate carboxylase small chain 2 (Fragment) OS=Acetabularia cliftonii GN=RBCS-2 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 4.967e-15 Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 3 Query: 366 SPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 557 S Y D RYWTMWKLPM+GCTD +QVL E+ K +P +++R++ FD RQVQ F+ +PP Sbjct: 10 SSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 73
BLAST of CN189199 vs. ExPASy Swiss-Prot
Match: RBS2_CHRVI (Ribulose bisphosphate carboxylase small chain 2 OS=Chromatium vinosum GN=cbbS2 PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.487e-15 Identity = 39/110 (35.45%), Postives = 61/110 (55.45%), Query Frame = 3 Query: 225 KFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 554 ++ET SYLPPL+ E +L++I Y++ +GW LE H+ P YW MWK+P +G D +L E+ ++ YP VR++G+D Q + SF+A +P Sbjct: 15 RYETFSYLPPLNREEILEQILYILDNGWNASLE------------HEHPDRAFEYYWPMWKMPFFGEQDPNVILTEIESCRRSYPDHHVRLVGYDTYAQSKGHSFLAHRP 112
BLAST of CN189199 vs. ExPASy Swiss-Prot
Match: RBS2_HYDMR (Ribulose bisphosphate carboxylase small chain 2 OS=Hydrogenovibrio marinus GN=cbbS-2 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 8.472e-15 Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = 3 Query: 231 ETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 539 ET S+LP + + + +I Y+I GW P LE H++P YW MWKLPM+G D VL E+ + + YP+ +R+IG+DN Q Q +F Sbjct: 15 ETFSFLPEFTADEIYDQIVYIINQGWTPALE------------HEAPEAASSHYWGMWKLPMFGTRDPNAVLAEIDQCRAAYPNHMIRLIGYDNYTQCQGHNF 105 The following BLAST results are available for this feature:
BLAST of CN189199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 128
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189199 ID=CN189199; Name=CN189199; organism=Citrus sinensis; type=EST; length=654bpback to top |