CV884224

Overview
NameCV884224
Unique NameCV884224
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig821 contig Csv1_Contig821:145..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_SOLLC (Histone H4 OS=Solanum lycopersicum PE=3 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 1.278e-38
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_SOLCH (Histone H4 OS=Solanum chacoense PE=3 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 1.278e-38
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_CAPAN (Histone H4 OS=Capsicum annuum PE=3 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 1.278e-38
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_XENTR (Histone H4 OS=Xenopus tropicalis GN=TGas006m08.1 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.669e-38
Identity = 79/81 (97.53%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_XENLA (Histone H4 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.669e-38
Identity = 79/81 (97.53%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_XENBO (Histone H4 OS=Xenopus borealis PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.669e-38
Identity = 79/81 (97.53%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_URECA (Histone H4 OS=Urechis caupo PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.669e-38
Identity = 79/81 (97.53%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_TIGCA (Histone H4 OS=Tigriopus californicus GN=His4 PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.669e-38
Identity = 79/81 (97.53%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_RHYAM (Histone H4 OS=Rhynchosciara americana GN=His4 PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.669e-38
Identity = 79/81 (97.53%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_RAT (Histone H4 OS=Rattus norvegicus GN=Hist1h4b PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.669e-38
Identity = 79/81 (97.53%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
The following BLAST results are available for this feature:
BLAST of CV884224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_SOLLC1.278e-3898.77Histone H4 OS=Solanum lycopersicum PE=3 SV=2[more]
H4_SOLCH1.278e-3898.77Histone H4 OS=Solanum chacoense PE=3 SV=3[more]
H4_CAPAN1.278e-3898.77Histone H4 OS=Capsicum annuum PE=3 SV=3[more]
H4_XENTR1.669e-3897.53Histone H4 OS=Xenopus tropicalis GN=TGas006m08.1 P... [more]
H4_XENLA1.669e-3897.53Histone H4 OS=Xenopus laevis PE=1 SV=2[more]
H4_XENBO1.669e-3897.53Histone H4 OS=Xenopus borealis PE=3 SV=2[more]
H4_URECA1.669e-3897.53Histone H4 OS=Urechis caupo PE=3 SV=2[more]
H4_TIGCA1.669e-3897.53Histone H4 OS=Tigriopus californicus GN=His4 PE=3 ... [more]
H4_RHYAM1.669e-3897.53Histone H4 OS=Rhynchosciara americana GN=His4 PE=3... [more]
H4_RAT1.669e-3897.53Histone H4 OS=Rattus norvegicus GN=Hist1h4b PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002A12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884224 ID=CV884224; Name=CV884224; organism=Citrus sinensis; type=EST; length=543bp
GACGATTTTCTCTATCCAAATTCTCTTTCGAGGAACAGCGGAAACTCTTT
TAAGTTCCTCGCTAAAATGTCTGGGCGCGGTAAGGGAGGCAAGGGATTGG
GAAAGGGAGGCGCCAAGCCTCACCGTAAGGTGCTTCGCGATAACATTCAG
GGTATCACAAAGCCGGCAATCCGGCGTTTGGCTCGTAGAGGTGGAGTCAA
GCGTATCAGCGGCTTGATCTACGAGGAGACACGTGGCGTCCTGAAGATAT
TCTTGGAGAACGTCATCCGTGACGCCGTGACCTACACTGAGCACGCCAGG
AGAAAGACCGTGACCGCGATGGACGTCGTTTACGCTCTCAAGAGGCAGGG
CAGGACTCTTTATGGATTTGGGGGTTAATTGTCTTAGGGTTCTGGAATTA
AATGTTAATAGATCTTGACTCTAGATCTTGATCTGGTAGATGGGGCTCTT
AGTAGTTTGTTATTAGGTTGCTGCTTTGTAATTCTATCAAGTTAAATCTT
ATCTTTATATTTGAGGCAATATAGAACTGTTTTCTTTGAAAAA
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