CV884224

Overview
NameCV884224
Unique NameCV884224
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig821 contig Csv1_Contig821:145..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_TETTH (Histone H4 OS=Tetrahymena thermophila GN=HHF1 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 2.853e-30
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = 1
Query:  124 RKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            RK  + +I+GITKPAIRRLARRGGVKRIS  IY+++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   20 RKSNKASIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H42_TETPY (Histone H4, minor OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 2.853e-30
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = 1
Query:  124 RKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            RK  + +I+GITKPAIRRLARRGGVKRIS  IY+++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   20 RKSNKASIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H42_BLEJA (Histone H4 (Fragment) OS=Blepharisma japonicum GN=H4 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.357e-30
Identity = 63/78 (80.77%), Postives = 75/78 (96.15%), Query Frame = 1
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKR-ISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 351
            HR+V+R+N QGITKPAIRRLARRGGVKR +SGL+Y+ETR VLK+FLE+V+RDAVTYTEHA+R+TVTA+DVVYALKRQG
Sbjct:   12 HRRVIRENNQGITKPAIRRLARRGGVKRTLSGLVYDETRNVLKVFLESVVRDAVTYTEHAKRETVTALDVVYALKRQG 89          
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H41_TETPY (Histone H4, major OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.084e-29
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 1
Query:  142 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            +I+GITKPAIRRLARRGGVKRIS  IY+++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   26 SIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_ENTHI (Histone H4 OS=Entamoeba histolytica PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.416e-29
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 1
Query:  127 KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            K  +D ++GITKPAIRRLARRGGVKRI+G +Y+ETR VLK FLE VIRD+VTYTEHA+R+TVTAMDVVYALKRQGRTLY
Sbjct:   37 KTQQDALKGITKPAIRRLARRGGVKRINGAVYDETRNVLKQFLEQVIRDSVTYTEHAKRRTVTAMDVVYALKRQGRTLY 115          
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_DICDI (Histone H4 OS=Dictyostelium discoideum GN=H4a PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.155e-29
Identity = 64/81 (79.01%), Postives = 71/81 (87.65%), Query Frame = 1
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            H+K  +++I GITKPAIRRLARRGGVKRIS  IYEETR VL+ FL NVIRD+V YTEHA R+TVTAMDVVYALKRQGRTLY
Sbjct:   24 HKKTQKEHINGITKPAIRRLARRGGVKRISFPIYEETRNVLRTFLTNVIRDSVAYTEHAGRRTVTAMDVVYALKRQGRTLY 104          
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4G_HUMAN (Histone H4-like protein type G OS=Homo sapiens GN=HIST1H4G PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.671e-28
Identity = 66/80 (82.50%), Postives = 68/80 (85.00%), Query Frame = 1
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL 360
            HRKVL DNIQGITK  IRRLAR GGVKRI GLIYEETR V K+FLENVI  AVT TEHA+RKTVTAM VVY LKRQGRTL
Sbjct:   19 HRKVLSDNIQGITKCTIRRLARHGGVKRILGLIYEETRRVFKVFLENVIWYAVTNTEHAKRKTVTAMAVVYVLKRQGRTL 98          
The following BLAST results are available for this feature:
BLAST of CV884224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_TETTH2.853e-3082.50Histone H4 OS=Tetrahymena thermophila GN=HHF1 PE=1... [more]
H42_TETPY2.853e-3082.50Histone H4, minor OS=Tetrahymena pyriformis PE=1 S... [more]
H42_BLEJA6.357e-3080.77Histone H4 (Fragment) OS=Blepharisma japonicum GN=... [more]
H41_TETPY1.084e-2986.49Histone H4, major OS=Tetrahymena pyriformis PE=1 S... [more]
H4_ENTHI1.416e-2979.75Histone H4 OS=Entamoeba histolytica PE=3 SV=1[more]
H4_DICDI3.155e-2979.01Histone H4 OS=Dictyostelium discoideum GN=H4a PE=1... [more]
H4G_HUMAN2.671e-2882.50Histone H4-like protein type G OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002A12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884224 ID=CV884224; Name=CV884224; organism=Citrus sinensis; type=EST; length=543bp
GACGATTTTCTCTATCCAAATTCTCTTTCGAGGAACAGCGGAAACTCTTT
TAAGTTCCTCGCTAAAATGTCTGGGCGCGGTAAGGGAGGCAAGGGATTGG
GAAAGGGAGGCGCCAAGCCTCACCGTAAGGTGCTTCGCGATAACATTCAG
GGTATCACAAAGCCGGCAATCCGGCGTTTGGCTCGTAGAGGTGGAGTCAA
GCGTATCAGCGGCTTGATCTACGAGGAGACACGTGGCGTCCTGAAGATAT
TCTTGGAGAACGTCATCCGTGACGCCGTGACCTACACTGAGCACGCCAGG
AGAAAGACCGTGACCGCGATGGACGTCGTTTACGCTCTCAAGAGGCAGGG
CAGGACTCTTTATGGATTTGGGGGTTAATTGTCTTAGGGTTCTGGAATTA
AATGTTAATAGATCTTGACTCTAGATCTTGATCTGGTAGATGGGGCTCTT
AGTAGTTTGTTATTAGGTTGCTGCTTTGTAATTCTATCAAGTTAAATCTT
ATCTTTATATTTGAGGCAATATAGAACTGTTTTCTTTGAAAAA
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