CV884224

Overview
NameCV884224
Unique NameCV884224
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig821 contig Csv1_Contig821:145..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_ACRAS (Histone H4 OS=Acrolepiopsis assectella GN=His4 PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.669e-38
Identity = 79/81 (97.53%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_DENKL (Histone H4 OS=Dendronephthya klunzingeri GN=H4DEKL PE=3 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 2.180e-38
Identity = 78/81 (96.30%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRK+LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   19 HRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_ACRFO (Histone H4 OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 2.180e-38
Identity = 78/81 (96.30%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRK+LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   19 HRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H43_MAIZE (Histone H4.3 OS=Zea mays GN=H4 PE=1 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 2.847e-38
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 1 
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGV KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVRKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_STYPL (Histone H4 OS=Styela plicata PE=3 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 3.718e-38
Identity = 78/81 (96.30%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTA+DVVYALKRQGRTLY
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTALDVVYALKRQGRTLY 99
[Close]
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_PYRSA (Histone H4 OS=Pyrenomonas salina PE=3 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 3.718e-38
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 1 
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK+FLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_OIKDI (Histone H4 OS=Oikopleura dioica GN=H4.1 PE=3 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 3.718e-38
Identity = 78/81 (96.30%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTA+DVVYALKRQGRTLY
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTALDVVYALKRQGRTLY 99
[Close]
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_MYTCH (Histone H4 OS=Mytilus chilensis PE=3 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 3.718e-38
Identity = 78/81 (96.30%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HR+VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   19 HRRVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_STRPU (Histone H4 OS=Strongylocentrotus purpuratus PE=3 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 8.283e-38
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 1 
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_PYCHE (Histone H4 OS=Pycnopodia helianthoides PE=3 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 8.283e-38
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 1 
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLY 99
The following BLAST results are available for this feature:
BLAST of CV884224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_ACRAS1.669e-3897.53Histone H4 OS=Acrolepiopsis assectella GN=His4 PE=... [more]
H4_DENKL2.180e-3896.30Histone H4 OS=Dendronephthya klunzingeri GN=H4DEKL... [more]
H4_ACRFO2.180e-3896.30Histone H4 OS=Acropora formosa PE=3 SV=2[more]
H43_MAIZE2.847e-3898.77Histone H4.3 OS=Zea mays GN=H4 PE=1 SV=3[more]
H4_STYPL3.718e-3896.30Histone H4 OS=Styela plicata PE=3 SV=3[more]
H4_PYRSA3.718e-3897.53Histone H4 OS=Pyrenomonas salina PE=3 SV=3[more]
H4_OIKDI3.718e-3896.30Histone H4 OS=Oikopleura dioica GN=H4.1 PE=3 SV=3[more]
H4_MYTCH3.718e-3896.30Histone H4 OS=Mytilus chilensis PE=3 SV=3[more]
H4_STRPU8.283e-3896.30Histone H4 OS=Strongylocentrotus purpuratus PE=3 S... [more]
H4_PYCHE8.283e-3896.30Histone H4 OS=Pycnopodia helianthoides PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002A12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884224 ID=CV884224; Name=CV884224; organism=Citrus sinensis; type=EST; length=543bp
GACGATTTTCTCTATCCAAATTCTCTTTCGAGGAACAGCGGAAACTCTTT
TAAGTTCCTCGCTAAAATGTCTGGGCGCGGTAAGGGAGGCAAGGGATTGG
GAAAGGGAGGCGCCAAGCCTCACCGTAAGGTGCTTCGCGATAACATTCAG
GGTATCACAAAGCCGGCAATCCGGCGTTTGGCTCGTAGAGGTGGAGTCAA
GCGTATCAGCGGCTTGATCTACGAGGAGACACGTGGCGTCCTGAAGATAT
TCTTGGAGAACGTCATCCGTGACGCCGTGACCTACACTGAGCACGCCAGG
AGAAAGACCGTGACCGCGATGGACGTCGTTTACGCTCTCAAGAGGCAGGG
CAGGACTCTTTATGGATTTGGGGGTTAATTGTCTTAGGGTTCTGGAATTA
AATGTTAATAGATCTTGACTCTAGATCTTGATCTGGTAGATGGGGCTCTT
AGTAGTTTGTTATTAGGTTGCTGCTTTGTAATTCTATCAAGTTAAATCTT
ATCTTTATATTTGAGGCAATATAGAACTGTTTTCTTTGAAAAA
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