CX672493

Overview
NameCX672493
Unique NameCX672493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SHEB9 (30S ribosomal protein S13 OS=Shewanella baltica (strain OS195) GN=rpsM PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.427e-21
Identity = 53/114 (46.49%), Postives = 73/114 (64.04%), Query Frame = -2
Query:  118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456
            R+    IP+ K    +L  ++GIGR+RA  I     I      KEL+  +++ LREEV++Y+   DLRR I  +++RL+D+ CYRG+RH + LP RGQRT TNARTRKG R  I
Sbjct:    3 RIAGINIPDQKHTVIALTAIFGIGRTRARAICAATAIAETAKIKELSEAQIDILREEVAKYIVEGDLRREISMNIKRLMDLGCYRGLRHRRSLPLRGQRTKTNARTRKGPRKPI 116          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SHEB8 (30S ribosomal protein S13 OS=Shewanella baltica (strain OS185) GN=rpsM PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.427e-21
Identity = 53/114 (46.49%), Postives = 73/114 (64.04%), Query Frame = -2
Query:  118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456
            R+    IP+ K    +L  ++GIGR+RA  I     I      KEL+  +++ LREEV++Y+   DLRR I  +++RL+D+ CYRG+RH + LP RGQRT TNARTRKG R  I
Sbjct:    3 RIAGINIPDQKHTVIALTAIFGIGRTRARAICAATAIAETAKIKELSEAQIDILREEVAKYIVEGDLRREISMNIKRLMDLGCYRGLRHRRSLPLRGQRTKTNARTRKGPRKPI 116          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SHEB5 (30S ribosomal protein S13 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rpsM PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.427e-21
Identity = 53/114 (46.49%), Postives = 73/114 (64.04%), Query Frame = -2
Query:  118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456
            R+    IP+ K    +L  ++GIGR+RA  I     I      KEL+  +++ LREEV++Y+   DLRR I  +++RL+D+ CYRG+RH + LP RGQRT TNARTRKG R  I
Sbjct:    3 RIAGINIPDQKHTVIALTAIFGIGRTRARAICAATAIAETAKIKELSEAQIDILREEVAKYIVEGDLRREISMNIKRLMDLGCYRGLRHRRSLPLRGQRTKTNARTRKGPRKPI 116          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SHEB2 (30S ribosomal protein S13 OS=Shewanella baltica (strain OS223) GN=rpsM PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.427e-21
Identity = 53/114 (46.49%), Postives = 73/114 (64.04%), Query Frame = -2
Query:  118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456
            R+    IP+ K    +L  ++GIGR+RA  I     I      KEL+  +++ LREEV++Y+   DLRR I  +++RL+D+ CYRG+RH + LP RGQRT TNARTRKG R  I
Sbjct:    3 RIAGINIPDQKHTVIALTAIFGIGRTRARAICAATAIAETAKIKELSEAQIDILREEVAKYIVEGDLRREISMNIKRLMDLGCYRGLRHRRSLPLRGQRTKTNARTRKGPRKPI 116          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_PSEU5 (30S ribosomal protein S13 OS=Pseudomonas stutzeri (strain A1501) GN=rpsM PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.427e-21
Identity = 50/114 (43.86%), Postives = 73/114 (64.04%), Query Frame = -2
Query:  118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456
            R+    IP++K    SL ++YG+GR+RA +I     +      K+L+  ++  LR EV +++   DLRR +   ++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R  I
Sbjct:    3 RIAGVNIPDNKHTVISLTYIYGVGRTRAQEICAATGVNPAAKIKDLSDEQVELLRGEVGKFIVEGDLRRDVNMKIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPI 116          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_PSEF5 (30S ribosomal protein S13 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rpsM PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.427e-21
Identity = 53/115 (46.09%), Postives = 77/115 (66.96%), Query Frame = -2
Query:  118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQI--LCDLNIGNKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456
            R+    IP++K    SL ++YG+GR+ A +I  +  +N   K+ K+L+  ++  LR EV+++ T  DLRR I   ++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R  I
Sbjct:    3 RIAGVNIPDNKHTVISLTYIYGVGRTTAQKICAVTGVNPAAKI-KDLSDEQIEQLRGEVAKFTTEGDLRREINMKIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPI 116          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_POLSJ (30S ribosomal protein S13 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=rpsM PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.427e-21
Identity = 54/120 (45.00%), Postives = 75/120 (62.50%), Query Frame = -2
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQIL--CDLNIGNKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+    IP  +  E  L  ++GIGR+RA +I   CD+    K+ K+LT  +L  +R++++ +    DLRR    +++RL+DI CYRG RH +GLP RGQRT TNARTRKG R A    KK
Sbjct:    3 RIAGINIPPQQHAEIGLTAIFGIGRTRARKICEACDIAYSKKI-KDLTDGDLEKIRDQIALFTIEGDLRRETTMNIKRLMDIGCYRGFRHRRGLPMRGQRTRTNARTRKGPRKAAAALKK 121          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_METPP (30S ribosomal protein S13 OS=Methylibium petroleiphilum (strain PM1) GN=rpsM PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.427e-21
Identity = 56/119 (47.06%), Postives = 71/119 (59.66%), Query Frame = -2
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+    IP  K  E  L  +YGIGR+ A +I     I  +K  K+LT  +L  +REEV R     DLRR    +++RL+D+ CYRG RH +GLP RGQRT TNARTRKG R +    KK
Sbjct:    3 RIAGINIPPQKHAEIGLTAIYGIGRTTAQKICDSCGIARDKKIKDLTDGDLEKIREEVGRMTIEGDLRRETTINIKRLMDLGCYRGFRHRRGLPMRGQRTRTNARTRKGPRKSAAALKK 121          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_LAWIP (30S ribosomal protein S13 OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=rpsM PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.427e-21
Identity = 52/120 (43.33%), Postives = 79/120 (65.83%), Query Frame = -2
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+   ++P  KR + +L ++YG+GR  A ++L  + I  ++   +L+  ELN +R+E+ + Y    +LRR +  +++RL+DI CYRG+RH +GLP  GQRT TNARTRKG R    GKKK
Sbjct:    3 RIAGIDLPRGKRSDIALSYIYGVGRVTALKVLDAVGINWSRSIDDLSAEELNEVRKELEKNYKVEGELRREVSANIKRLMDIGCYRGLRHRKGLPVHGQRTHTNARTRKGPRKGAVGKKK 122          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_DICNV (30S ribosomal protein S13 OS=Dichelobacter nodosus (strain VCS1703A) GN=rpsM PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.427e-21
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = -2
Query:  127 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKR 456
            R+    +P  K    +L  +YGIG SRA +I    N+  +K  ++L+  E+ +LR+ VS Y    DLRR +  D++RL+D+ C+RG+RH + LP RGQRT TNARTRKG R
Sbjct:    3 RIAGINVPTQKHAVIALTSIYGIGTSRAKEICAKANVAPDKKIRDLSDSEVEALRQVVSEYQVEGDLRRQVSMDIKRLMDLGCFRGLRHRRSLPVRGQRTKTNARTRKGPR 113          
The following BLAST results are available for this feature:
BLAST of CX672493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_SHEB91.427e-2146.4930S ribosomal protein S13 OS=Shewanella baltica (s... [more]
RS13_SHEB81.427e-2146.4930S ribosomal protein S13 OS=Shewanella baltica (s... [more]
RS13_SHEB51.427e-2146.4930S ribosomal protein S13 OS=Shewanella baltica (s... [more]
RS13_SHEB21.427e-2146.4930S ribosomal protein S13 OS=Shewanella baltica (s... [more]
RS13_PSEU51.427e-2143.8630S ribosomal protein S13 OS=Pseudomonas stutzeri ... [more]
RS13_PSEF51.427e-2146.0930S ribosomal protein S13 OS=Pseudomonas fluoresce... [more]
RS13_POLSJ1.427e-2145.0030S ribosomal protein S13 OS=Polaromonas sp. (stra... [more]
RS13_METPP1.427e-2147.0630S ribosomal protein S13 OS=Methylibium petroleip... [more]
RS13_LAWIP1.427e-2143.3330S ribosomal protein S13 OS=Lawsonia intracellula... [more]
RS13_DICNV1.427e-2145.0530S ribosomal protein S13 OS=Dichelobacter nodosus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_17C10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-17C10-E19-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672493 ID=CX672493; Name=CX672493; organism=Citrus sinensis; type=EST; length=619bp
TGAAAACTAGTTGAATTTGTCCTAAAACTTATTTGTATCAAAAAAATAAT
TCACAATATTCTGATATGTCACAAACAACAGCCAATAAGTTTAACGAGTG
GGTTTCTTCTTCCCTGGAATTGCAACTCTTTTACCCTTACGGGTCCTAGC
ATTGGTGCTGGTTCGCTGTCCTCGGCAAGGCAACCCCTGACTATGTCTAA
TACCTCTGTAGCATTGGATGTCAACCAATCTCTCTACATCATTTTTAATG
CATCGCCTCAAATCTTCTCCAGTCAAGTATCTGGAAACTTCCTCACGAAG
AGAATTGAGTTCCACTCCAGTTAGTTCCTTGGTGAGTTTGTTCCCAATGT
TTAGGTCACAGAGAATTTGGTGAGCCCTTGAGCGCCCAATTCCATAAACA
TGCTGTAGAGAGGTTTCAAGTCTCTTGTCATTTGGAATCTCTGTGTTTCC
CACACGAAGGCCTTGTACGCGTAGACCATGAAACGAAATGGTCTGAATAA
GCTGCCGACTGACATTGGATAACATCCCAACGGAATTGCGTAAACTAATC
ATCTTTATGTCGATCCGGTCCTTGCGCCTCGGCTCTGAGTCTGAGATGAA
TCGGCAGTCGCAGCTGTGA
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