CX672493
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SHEB9 (30S ribosomal protein S13 OS=Shewanella baltica (strain OS195) GN=rpsM PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.427e-21 Identity = 53/114 (46.49%), Postives = 73/114 (64.04%), Query Frame = -2 Query: 118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456 R+ IP+ K +L ++GIGR+RA I I KEL+ +++ LREEV++Y+ DLRR I +++RL+D+ CYRG+RH + LP RGQRT TNARTRKG R I Sbjct: 3 RIAGINIPDQKHTVIALTAIFGIGRTRARAICAATAIAETAKIKELSEAQIDILREEVAKYIVEGDLRREISMNIKRLMDLGCYRGLRHRRSLPLRGQRTKTNARTRKGPRKPI 116
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SHEB8 (30S ribosomal protein S13 OS=Shewanella baltica (strain OS185) GN=rpsM PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.427e-21 Identity = 53/114 (46.49%), Postives = 73/114 (64.04%), Query Frame = -2 Query: 118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456 R+ IP+ K +L ++GIGR+RA I I KEL+ +++ LREEV++Y+ DLRR I +++RL+D+ CYRG+RH + LP RGQRT TNARTRKG R I Sbjct: 3 RIAGINIPDQKHTVIALTAIFGIGRTRARAICAATAIAETAKIKELSEAQIDILREEVAKYIVEGDLRREISMNIKRLMDLGCYRGLRHRRSLPLRGQRTKTNARTRKGPRKPI 116
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SHEB5 (30S ribosomal protein S13 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rpsM PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.427e-21 Identity = 53/114 (46.49%), Postives = 73/114 (64.04%), Query Frame = -2 Query: 118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456 R+ IP+ K +L ++GIGR+RA I I KEL+ +++ LREEV++Y+ DLRR I +++RL+D+ CYRG+RH + LP RGQRT TNARTRKG R I Sbjct: 3 RIAGINIPDQKHTVIALTAIFGIGRTRARAICAATAIAETAKIKELSEAQIDILREEVAKYIVEGDLRREISMNIKRLMDLGCYRGLRHRRSLPLRGQRTKTNARTRKGPRKPI 116
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SHEB2 (30S ribosomal protein S13 OS=Shewanella baltica (strain OS223) GN=rpsM PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.427e-21 Identity = 53/114 (46.49%), Postives = 73/114 (64.04%), Query Frame = -2 Query: 118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456 R+ IP+ K +L ++GIGR+RA I I KEL+ +++ LREEV++Y+ DLRR I +++RL+D+ CYRG+RH + LP RGQRT TNARTRKG R I Sbjct: 3 RIAGINIPDQKHTVIALTAIFGIGRTRARAICAATAIAETAKIKELSEAQIDILREEVAKYIVEGDLRREISMNIKRLMDLGCYRGLRHRRSLPLRGQRTKTNARTRKGPRKPI 116
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_PSEU5 (30S ribosomal protein S13 OS=Pseudomonas stutzeri (strain A1501) GN=rpsM PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.427e-21 Identity = 50/114 (43.86%), Postives = 73/114 (64.04%), Query Frame = -2 Query: 118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456 R+ IP++K SL ++YG+GR+RA +I + K+L+ ++ LR EV +++ DLRR + ++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R I Sbjct: 3 RIAGVNIPDNKHTVISLTYIYGVGRTRAQEICAATGVNPAAKIKDLSDEQVELLRGEVGKFIVEGDLRRDVNMKIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPI 116
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_PSEF5 (30S ribosomal protein S13 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rpsM PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.427e-21 Identity = 53/115 (46.09%), Postives = 77/115 (66.96%), Query Frame = -2 Query: 118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQI--LCDLNIGNKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456 R+ IP++K SL ++YG+GR+ A +I + +N K+ K+L+ ++ LR EV+++ T DLRR I ++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R I Sbjct: 3 RIAGVNIPDNKHTVISLTYIYGVGRTTAQKICAVTGVNPAAKI-KDLSDEQIEQLRGEVAKFTTEGDLRREINMKIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPI 116
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_POLSJ (30S ribosomal protein S13 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=rpsM PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.427e-21 Identity = 54/120 (45.00%), Postives = 75/120 (62.50%), Query Frame = -2 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQIL--CDLNIGNKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456 R+ IP + E L ++GIGR+RA +I CD+ K+ K+LT +L +R++++ + DLRR +++RL+DI CYRG RH +GLP RGQRT TNARTRKG R A KK Sbjct: 3 RIAGINIPPQQHAEIGLTAIFGIGRTRARKICEACDIAYSKKI-KDLTDGDLEKIRDQIALFTIEGDLRRETTMNIKRLMDIGCYRGFRHRRGLPMRGQRTRTNARTRKGPRKAAAALKK 121
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_METPP (30S ribosomal protein S13 OS=Methylibium petroleiphilum (strain PM1) GN=rpsM PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.427e-21 Identity = 56/119 (47.06%), Postives = 71/119 (59.66%), Query Frame = -2 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456 R+ IP K E L +YGIGR+ A +I I +K K+LT +L +REEV R DLRR +++RL+D+ CYRG RH +GLP RGQRT TNARTRKG R + KK Sbjct: 3 RIAGINIPPQKHAEIGLTAIYGIGRTTAQKICDSCGIARDKKIKDLTDGDLEKIREEVGRMTIEGDLRRETTINIKRLMDLGCYRGFRHRRGLPMRGQRTRTNARTRKGPRKSAAALKK 121
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_LAWIP (30S ribosomal protein S13 OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=rpsM PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.427e-21 Identity = 52/120 (43.33%), Postives = 79/120 (65.83%), Query Frame = -2 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456 R+ ++P KR + +L ++YG+GR A ++L + I ++ +L+ ELN +R+E+ + Y +LRR + +++RL+DI CYRG+RH +GLP GQRT TNARTRKG R GKKK Sbjct: 3 RIAGIDLPRGKRSDIALSYIYGVGRVTALKVLDAVGINWSRSIDDLSAEELNEVRKELEKNYKVEGELRREVSANIKRLMDIGCYRGLRHRKGLPVHGQRTHTNARTRKGPRKGAVGKKK 122
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_DICNV (30S ribosomal protein S13 OS=Dichelobacter nodosus (strain VCS1703A) GN=rpsM PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.427e-21 Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = -2 Query: 127 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKR 456 R+ +P K +L +YGIG SRA +I N+ +K ++L+ E+ +LR+ VS Y DLRR + D++RL+D+ C+RG+RH + LP RGQRT TNARTRKG R Sbjct: 3 RIAGINVPTQKHAVIALTSIYGIGTSRAKEICAKANVAPDKKIRDLSDSEVEALRQVVSEYQVEGDLRRQVSMDIKRLMDLGCFRGLRHRRSLPVRGQRTKTNARTRKGPR 113 The following BLAST results are available for this feature:
BLAST of CX672493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX672493 ID=CX672493; Name=CX672493; organism=Citrus sinensis; type=EST; length=619bpback to top |