DT214569

Overview
NameDT214569
Unique NameDT214569
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6249 contig Csv1_Contig6249:4..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214569 vs. ExPASy Swiss-Prot
Match: RBS_STELP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Stellaria longipes GN=RBCS PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.674e-73
Identity = 131/179 (73.18%), Postives = 153/179 (85.47%), Query Frame = -2
Query:  148 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 684
            MASS++SSA VAT  R++ AQASMVAPFTGLKS+++FP ++KTN DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP LS E LL EI YL+++GW+PCLEFE E G+VYREH  SPGYYDGRYWTMWKLPM+GCTDATQV  EV E +K YP + +RIIGFDN RQVQCISFIA KP
Sbjct:    1 MASSIMSSAAVAT--RSNGAQASMVAPFTGLKSNASFPVSRKTNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSSEQLLSEIEYLLKNGWVPCLEFETEHGFVYREHTSSPGYYDGRYWTMWKLPMFGCTDATQVAAEVQEAKKAYPDAHIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of DT214569 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.674e-73
Identity = 132/181 (72.93%), Postives = 154/181 (85.08%), Query Frame = -2
Query:  142 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 684
            ++S M+SSA  AT  RAS AQ+SMVAPFTGLKS+SAFP T+K N D++ + SNGGRVQCMKVWP  G+KKFETLSYLP + DEAL+K+I YL+RS WIPCLEF   KG+V+RE+H+SPGYYDGRYWTMWKLPM+GCTDA QV KEV E +KEYPH+F+RIIGFDN RQVQCISFIA KP G
Sbjct:    2 VSSMMVSSA--ATFTRASPAQSSMVAPFTGLKSASAFPVTRKPNADLSHLPSNGGRVQCMKVWPIEGVKKFETLSYLPTMKDEALVKQIEYLLRSKWIPCLEF-CPKGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVAKEVEECKKEYPHAFIRIIGFDNNRQVQCISFIAYKPTG 179          
BLAST of DT214569 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.674e-73
Identity = 131/181 (72.38%), Postives = 152/181 (83.98%), Query Frame = -2
Query:  142 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 684
            MASS++S+A  A    AS AQA+MVAPF GLKS ++FP T+K+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLSD  LL ++ YL+ +GWIPC+EFELE  +VYRE+H+SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIGFDNKRQVQC+SFIA KPPG
Sbjct:    1 MASSLMSNAITAVVG-ASGAQANMVAPFNGLKSIASFPVTRKSN-DITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNNGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAFKPPG 179          
BLAST of DT214569 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.855e-73
Identity = 126/179 (70.39%), Postives = 151/179 (84.36%), Query Frame = -2
Query:  148 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 684
            MASS++S+A    A   + AQA+MVAPF GLKS SAFP T+K NNDITS+ASNGGRVQCM+VWPP G+KKFETLSYLPPLS+E+LLKE+ YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+SFIA KP
Sbjct:    1 MASSLMSNAATTMAAATTTAQANMVAPFNGLKSISAFPVTRK-NNDITSVASNGGRVQCMQVWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 178          
BLAST of DT214569 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.085e-72
Identity = 126/179 (70.39%), Postives = 150/179 (83.80%), Query Frame = -2
Query:  148 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 684
            MASS++S+A    A   + AQA+MVAPF GLKS SAFP T+K NNDITS+ASNGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQCISFIA KP
Sbjct:    1 MASSLMSNAATTMAAATTTAQANMVAPFNGLKSVSAFPVTRK-NNDITSVASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 178          
BLAST of DT214569 vs. ExPASy Swiss-Prot
Match: RBS2_SPIOL (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.085e-72
Identity = 126/181 (69.61%), Postives = 154/181 (85.08%), Query Frame = -2
Query:  142 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 684
            MASS++SSA VAT +R   AQASMVAPFTGLKS+  FPATKK N+DITS+ASNGGRVQCMKVWP   +K++ETLSYLPPL+ + L ++++YL+ + W+PCLEFE + G+VYREHH SPGYYDGRYWTMWKLPM+GCTD  QVL E+ E +KEYP++F+RIIGFD+ RQVQC+SFIA KP G
Sbjct:    1 MASSVLSSAAVATVSRTP-AQASMVAPFTGLKSTVGFPATKK-NDDITSLASNGGRVQCMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPAG 179          
BLAST of DT214569 vs. ExPASy Swiss-Prot
Match: RBS3_PEA (Ribulose bisphosphate carboxylase small chain 3A, chloroplastic OS=Pisum sativum GN=RBCS-3A PE=3 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.417e-72
Identity = 129/177 (72.88%), Postives = 148/177 (83.62%), Query Frame = -2
Query:  148 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 678
            +SMISS+ V T +RAS  Q++ VAPF GLKS + FP  KK N DITSI SNGGRV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YL+R GW+PCLEFELEKG+VYREH+KSPGYYDGRYWTMWKLPM+G TDA+QVLKE+ EV   YP +FVRIIGFDN RQVQCISFIA  P
Sbjct:    2 ASMISSSAVTTVSRASTVQSAAVAPFGGLKSMTGFPV-KKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISFIAHTP 177          
BLAST of DT214569 vs. ExPASy Swiss-Prot
Match: RBS2_NICSY (Ribulose bisphosphate carboxylase small chain S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.417e-72
Identity = 127/177 (71.75%), Postives = 151/177 (85.31%), Query Frame = -2
Query:  142 MISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 672
            M S+A VAT   A  AQASM+APFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS+E LL+E+ YL+++GW+PCLEFE E G+VYRE++KSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:    6 MSSAAAVATGTNA--AQASMIAPFTGLKSATSFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSEEQLLREVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of DT214569 vs. ExPASy Swiss-Prot
Match: RBS2_PEA (Ribulose bisphosphate carboxylase small chain 3C, chloroplastic OS=Pisum sativum GN=RBCS-3C PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.851e-72
Identity = 129/177 (72.88%), Postives = 148/177 (83.62%), Query Frame = -2
Query:  148 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 678
            +SMISS+ V T +RAS  Q++ VAPF GLKS + FP  KK N DITSI SNGGRV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YL+R GW+PCLEFELEKG+VYREH+KSPGYYDGRYWTMWKLPM+G TDA+QVLKE+ EV   YP +FVRIIGFDN RQVQCISFIA  P
Sbjct:    2 ASMISSSAVTTVSRASRGQSAAVAPFGGLKSMTGFPV-KKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISFIAHTP 177          
BLAST of DT214569 vs. ExPASy Swiss-Prot
Match: RBS4_FLAPR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 5.385e-72
Identity = 124/174 (71.26%), Postives = 153/174 (87.93%), Query Frame = -2
Query:  142 SATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 663
            S+TVAT +RA+ AQA+MVAPFTGLKS++AFPATKK N D +++ SNGGRVQCMKVWPP G KK+ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISFIA+KP G
Sbjct:    5 SSTVATVSRAAPAQANMVAPFTGLKSNAAFPATKKAN-DFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 177          
The following BLAST results are available for this feature:
BLAST of DT214569 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
RBS_STELP1.674e-7373.18Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MUSAC1.674e-7372.93Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_AMAHP1.674e-7372.38Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS4_MESCR2.855e-7370.39Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS3_MESCR1.085e-7270.39Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_SPIOL1.085e-7269.61Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS3_PEA1.417e-7272.88Ribulose bisphosphate carboxylase small chain 3A, ... [more]
RBS2_NICSY1.417e-7271.75Ribulose bisphosphate carboxylase small chain S41,... [more]
RBS2_PEA1.851e-7272.88Ribulose bisphosphate carboxylase small chain 3C, ... [more]
RBS4_FLAPR5.385e-7271.26Ribulose bisphosphate carboxylase small chain 4, c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_24A08_b2 Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10-2 Citrus sinensis cDNA clone UCRCS10-24A08-A16-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214569 ID=DT214569; Name=DT214569; organism=Citrus sinensis; type=EST; length=730bp
TGAGCAGCAGCAACAGCAGCCTAAGTAAAATTAAACGCAAACCGAACCCC
CATTGATCGAACGTTCATGATGGGGGTTACACATAATAATAATCAACAAT
ATTGCATGGGTGGTTACACAAATTTAATTGGGAACCTAGACGCCTGGTGG
CTTGGCAGCAATGAAACTGATGCACTGCACTTGACGCTTGTTGTCAAATC
CGATAATTCGGACGAATGAATGTGGGTATTCCTTCTGGACCTCCCCAACC
TCCTTCAAAACCTGGGTTGCATCTGTGCACCCATACATGGGCAGCTTCCA
CATTGTCCAGTAGCGTCCATCGTAGTATCCTGGTGACTTGTGGTGCTCAC
GGTACACCCATCCTTTCTCCAACTCGAATTCCAAGCAGGGAATCCAGCCG
GAGCGGATAAGGTAATTGATTTCCTTGAGCAAAGCTTCATCGGACAGTGG
CGGGAGGTATGAGAGAGTCTCGAACTTCTTCAAGCCAGTTGGTGGCCACA
CCTTCATGCATTGGACTCTTCCGCCGTTGCTTGCAATGGAAGTAATGTCA
TTGTTGGTCTTCTTGGTTGCTGGGAAAGCAGAAGAAGACTTGAGGCCGGT
GAAGGGGGCGACCATGCTGGCCTGAGCAAGGCTGGCGCGGTTCGCGGTGG
CAACGGTGGCCGATGAGATCATTGAGGAAGCCATTGGTACTTGCTCCTTC
AAAAGCTATAATAATAAATTTTAAAAAAAA
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