DT214568

Overview
NameDT214568
Unique NameDT214568
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214568 vs. ExPASy Swiss-Prot
Match: PELA_ERWCH (Pectate lyase A OS=Erwinia chrysanthemi GN=pelA PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.844e-16
Identity = 64/215 (29.77%), Postives = 100/215 (46.51%), Query Frame = -3
Query:  255 TIDGRGFNVQMSNGPCI--SIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHY--GPRGRSDGDGISIF-GSRDIWIDHCTFSHC-----------------YDGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDDFSA-DKNMQVTIAFNFFGDGLVQRMPRCRHGFFHIVNNIYTG-------WEMYAIGGSANPTINSQGNVFIASNDESTK 809
            T+ G G + +  NG  I       +N+II N+YI   +        D   HY  G    ++ D ++I  G+  +WIDH T S                   +DG +DI  GS  +TISN+ +  H++ ML+GH+D  SA DK       FN   + + +R PR R+G  H  NN++ G          Y+ G   + ++ S+GN F  +N  ++K
Sbjct:  122 TVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPI--------DVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHNDTNSAQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASK 328          
BLAST of DT214568 vs. ExPASy Swiss-Prot
Match: PELE1_ERWCH (Pectate lyase E OS=Erwinia chrysanthemi GN=pelE PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.938e-16
Identity = 65/218 (29.82%), Postives = 101/218 (46.33%), Query Frame = -3
Query:  261 ELVMNSYKTIDGRGFNVQMSNGPCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHY--GPRGRSDGDGISIFGSRDIWIDHCTFSHC-----------------YDGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDDFSADKNMQVTIAF-NFFGDGLVQRMPRCRHGFFHIVNNIYTG-------WEMYAIGGSANPTINSQGNVFIASNDES 833
            ++ + S  TI G G N + +NG  + I  V N+I+ N+YI   V        D   HY  G    ++ D   I  S ++W+DH T S                   +DG +DI  GS  +TIS +    H++ +L+GHSD   +  + ++ + F N   D + +R PR R G  H  NN+Y G         +Y+ G   + +I S+ N F  SN +S
Sbjct:  105 QISIPSNTTIIGVGSNGKFTNGSLV-IKGVKNVILRNLYIETPV--------DVAPHYESGDGWNAEWDAAVIDNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGALDIKKGSDYVTISYSRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVRFGSIHAYNNVYLGDVKHSVYPYLYSFGLGTSGSILSESNSFTLSNLKS 313          
BLAST of DT214568 vs. ExPASy Swiss-Prot
Match: PELE_DICD3 (Pectate lyase E OS=Dickeya dadantii (strain 3937) GN=pelE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.794e-15
Identity = 71/259 (27.41%), Postives = 119/259 (45.95%), Query Frame = -3
Query:  147 ELVMNSYKTIDGRGFNVQMSNGPCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHY--GPRGRSDGDGISIFGSRDIWIDHCTFSHC-----------------YDGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDDFSADK--NMQVTIAFNFFGDGLVQRMPRCRHGFFHIVNNIYTG-------WEMYAIGGSANPTINSQGNVFIASNDESTKEVTKHEIISEDDEWKKWNWR--SEGDLMLNGAFFTPSG 833
            ++ + S  TI G G   + +NG  + +  VSN+I+ N+YI   V        D   HY  G    ++ D + I  +  +W+DH T S                   +DG +DI  GS  +T+SN+    H++ +L+GHSD+  +     ++VT   N F D + +R PR R G  H  NN+Y G          Y+ G   + ++ S+ N F   N    K+++  +   E    K +N +  S+   ++NGA +  +G
Sbjct:  123 QISIPSNTTIIGIGNKGKFTNGSLV-VKGVSNVILRNLYIETPV--------DVAPHYEEGDGWNAEWDAVVIDSTDHVWVDHVTISDGSLTDDKYTTKNGEKYVQHDGSLDIKRGSDYVTVSNSRFELHDKTILIGHSDNNGSQDAGKLRVTFHNNLF-DRVGERTPRVRFGSVHAYNNVYVGDVNHKAYRYQYSFGIGTSGSLLSESNAFTIDN---MKKISGRD--KECSVVKAFNGKIFSDKGSIINGASYNLNG 366          
BLAST of DT214568 vs. ExPASy Swiss-Prot
Match: PELE2_ERWCH (Pectate lyase E OS=Erwinia chrysanthemi GN=pelE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.794e-15
Identity = 71/259 (27.41%), Postives = 119/259 (45.95%), Query Frame = -3
Query:  147 ELVMNSYKTIDGRGFNVQMSNGPCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHY--GPRGRSDGDGISIFGSRDIWIDHCTFSHC-----------------YDGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDDFSADK--NMQVTIAFNFFGDGLVQRMPRCRHGFFHIVNNIYTG-------WEMYAIGGSANPTINSQGNVFIASNDESTKEVTKHEIISEDDEWKKWNWR--SEGDLMLNGAFFTPSG 833
            ++ + S  TI G G   + +NG  + +  VSN+I+ N+YI   V        D   HY  G    ++ D + I  +  +W+DH T S                   +DG +DI  GS  +T+SN+    H++ +L+GHSD+  +     ++VT   N F D + +R PR R G  H  NN+Y G          Y+ G   + ++ S+ N F   N    K+++  +   E    K +N +  S+   ++NGA +  +G
Sbjct:  123 QISIPSNTTIIGIGNKGKFTNGSLV-VKGVSNVILRNLYIETPV--------DVAPHYEEGDGWNAEWDAVVIDSTDHVWVDHVTISDGSFTDDKYTTKNGEKYVQHDGSLDIKRGSDYVTVSNSRFELHDKTILIGHSDNNGSQDAGKLRVTFHNNLF-DRVGERTPRVRFGSVHAYNNVYVGDVNHKAYRYQYSFGIGTSGSLLSESNAFTIDN---MKKISGRD--KECSVVKAFNGKIFSDKGSIINGASYNLNG 366          
BLAST of DT214568 vs. ExPASy Swiss-Prot
Match: PELB_COLGL (Pectate lyase B OS=Colletotrichum gloeosporioides GN=PLB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.082e-13
Identity = 65/226 (28.76%), Postives = 100/226 (44.25%), Query Frame = -3
Query:  186 MNSYKTIDGRGFNVQMSNGPCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFSH--------CYDGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDDFSADK--NMQVTIAFNFFGDGLVQRMPRCRHGFFHIVNNIYTGWEMYAIGGSANPTINSQGNVFIASNDEST---KEVTKHEIISEDDEWKKWNWRSEG 824
            + S K+I GR  +     G  + I    N+I+ N+ I       S V+ D+           GD I I  S  +W+DHC  S          YDGL+DI + S A+T+SN Y+  H +  L+GHSD  SA+    + VT A N + + +  R P  R G  HI NN     E   +       +  + +VF  +    T    + T + ++++ D     N R +G
Sbjct:   96 VGSNKSIIGRAGSSLTGVG--LYINKQENVIVRNMKI-------SKVLADN-----------GDRIGIQASSKVWVDHCDLSSDKKNNGKDYYDGLLDITHASMAVTVSNTYIHDHYKGSLVGHSDSNSAEDTGKLYVTYANNHWYN-VASRNPSVRFGNVHIFNNYAEKLETSGVNTRMGAQLLIESSVFSDTKKAVTFLDSKSTGYAVVNDVDLGGSTNDRPQG 300          
BLAST of DT214568 vs. ExPASy Swiss-Prot
Match: PEL_BACSU (Pectate lyase OS=Bacillus subtilis GN=pel PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.691e-12
Identity = 65/219 (29.68%), Postives = 89/219 (40.64%), Query Frame = -3
Query:  246 TIDGRGFNVQMSNGPCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDG------DGISIFGSRDIWIDHCTFS-----------------HCYDGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDD-FSADKNMQVTIAFNFFGDGLVQRMPRCRHGFFHIVNNIYTGWE-------MYAIGGSANPTINSQGNVFIASNDESTKEVT 809
            TI G G N ++  G         N+II NI   D          D    + P   S G      D I+I G   IWIDHCTF+                   +DG  D   G+  IT+S NY   H++  + G SD   S D  +++T+  N +   +VQR PR R G  H+ NN Y G          YA G   +  I +Q NV       + K ++
Sbjct:  151 TIVGSGTNAKVVGGNFQ--IKSDNVIIRNIEFQDAY--------DYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTIS 358          
BLAST of DT214568 vs. ExPASy Swiss-Prot
Match: PEL_PSEMA (Pectate lyase OS=Pseudomonas marginalis GN=pel PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.886e-11
Identity = 53/200 (26.50%), Postives = 85/200 (42.50%), Query Frame = -3
Query:  282 TIDGRGFNVQMSNGPCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFS-----------------HCYDGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDDFSADKNMQVTIAFNFFGDGLVQRMPRCRHGFFHIVNNIYTGWE-------MYAIGGSANPTINSQGNVF 809
            TI G G N ++  G   +  N  ++II NI + +  P     + D          S+ DG+++ G+ ++W+DH TF+                   +DG +D+  G+  +TIS +    H +  L+G SD  + D         N   + +  R PR R+G  H+ NN + G          YA G   N  I S+ N F
Sbjct:  116 TIVGIGSNAEIREGFFYAKEN--DVIIRNITVEN--PWDPEPIFDKDDGADGNWNSEYDGLTVEGANNVWVDHVTFTDGRRTDDQNGTEHERPKQHHDGALDVKNGANFVTISYSVFKSHEKNNLIGSSDSRTTDDGKLKVTIHNTLFENISARAPRVRYGQVHLYNNYHVGSTSHKVYPFSYAHGVGKNSKIFSERNAF 311          
The following BLAST results are available for this feature:
BLAST of DT214568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
PELA_ERWCH6.844e-1629.77Pectate lyase A OS=Erwinia chrysanthemi GN=pelA PE... [more]
PELE1_ERWCH8.938e-1629.82Pectate lyase E OS=Erwinia chrysanthemi GN=pelE PE... [more]
PELE_DICD35.794e-1527.41Pectate lyase E OS=Dickeya dadantii (strain 3937) ... [more]
PELE2_ERWCH5.794e-1527.41Pectate lyase E OS=Erwinia chrysanthemi GN=pelE PE... [more]
PELB_COLGL7.082e-1328.76Pectate lyase B OS=Colletotrichum gloeosporioides ... [more]
PEL_BACSU2.691e-1229.68Pectate lyase OS=Bacillus subtilis GN=pel PE=1 SV=... [more]
PEL_PSEMA3.886e-1126.50Pectate lyase OS=Pseudomonas marginalis GN=pel PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_23A09_b2 Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10-2 Citrus sinensis cDNA clone UCRCS10-23A09-A17-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214568 ID=DT214568; Name=DT214568; organism=Citrus sinensis; type=EST; length=835bp
GGTATAANCATTTGGTAGCAAAATTAGCAAGGTTGGCTATTCCGGCAACT
GAGCGTTCCGGCGGACGGAGAACTAGCAGTTAAAAGTGAAGTGGCCGGTC
TCGCAACCATGCTTGAAGCTTTCATGTAGCTTGCAGGAGTTTCTTGTCCA
GAAGGTGTAAAGAAAGCACCATTAAGCATCAGATCTCCTTCTGATCTCCA
ATTCCATTTCTTCCATTCATCATCTTCTGATATGATTTCATGTTTTGTCA
CCTCCTTGGTAGATTCGTCATTTGATGCTATGAAAACATTTCCTTGGCTA
TTGATTGTAGGATTAGCACTTCCTCCAATTGCATACATCTCCCACCCAGT
GTATATATTATTCACAATGTGAAAGAACCCATGTCGGCACCTGGGCATTC
TTTGAACAAGACCATCTCCGAAAAAATTGAAGGCAATGGTGACCTGCATA
TTCTTGTCAGCAGAGAAATCATCACTATGACCCATTAGCATGACTTCATT
GTGATGGAACATGTAGTTGTTTGAGATTGTTATGGCTGTAGAGCCATAAA
CAATGTCGATGAGTCCGTCATAGCAATGGGAGAAAGTACAGTGATCAATC
CAGATATCTCTTGAACCGAATATCGATATGCCATCTCCATCTGATCTGCC
TCTTGGTCCATAATGTTTCGGCGAGTCCCTCACCACAGCACTTCCTGCTG
GTACACAGTCATGTATGTAAATGTTATGTATGATGATGTTACTTACGTTG
TAAATTGATATGCATGGTCCATTTGACATTTGAACATTAAACCCTCTTCC
ATCTATGGTCTTGTATGAATTCATGACTAGTTCTT
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