DT214566

Overview
NameDT214566
Unique NameDT214566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBB3_PEA (Tubulin beta-3 chain (Fragment) OS=Pisum sativum GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.330e-62
Identity = 117/122 (95.90%), Postives = 119/122 (97.54%), Query Frame = -2 
Query:  255 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 620
            RYLTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKS+VCDI P GL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  300 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 421
[Close]
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBB_EUPFO (Tubulin beta chain OS=Euplotes focardii PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.737e-62
Identity = 114/122 (93.44%), Postives = 121/122 (99.18%), Query Frame = -2 
Query:  255 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 620
            RYLTASAMFRG+MSTKEVDEQMLNVQNKNSSYFVEWIPNN+KS+VCDIPP GLKM+STFIGNST+IQEMF+RV+EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  309 RYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSSTFIGNSTAIQEMFKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBB_EUPCR (Tubulin beta chain OS=Euplotes crassus PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.737e-62
Identity = 114/122 (93.44%), Postives = 121/122 (99.18%), Query Frame = -2 
Query:  255 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 620
            RYLTASAMFRG+MSTKEVDEQMLNVQNKNSSYFVEWIPNN+KS+VCDIPP GLK+ASTFIGNST+IQEMF+RV+EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  309 RYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKLASTFIGNSTAIQEMFKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBB_EUPOC (Tubulin beta chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 2.269e-62
Identity = 113/122 (92.62%), Postives = 121/122 (99.18%), Query Frame = -2 
Query:  255 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 620
            RYLTASAMFRG+MSTKEVDEQMLNVQNKNSSYFVEWIPNN+KS+VCDIPP GLKM+STF+GNST+IQEMF+RV+EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  309 RYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSSTFVGNSTAIQEMFKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBB7_GOSHI (Tubulin beta-7 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 2.269e-62
Identity = 115/122 (94.26%), Postives = 119/122 (97.54%), Query Frame = -2 
Query:  255 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 620
            RYLTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKS+VCDIPPTGL M+STF+GNSTSIQEMFRRVSEQFT MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA A
Sbjct:  309 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTGLTMSSTFMGNSTSIQEMFRRVSEQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAVA 430
[Close]
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBB4_WHEAT (Tubulin beta-4 chain OS=Triticum aestivum GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 2.269e-62
Identity = 115/122 (94.26%), Postives = 119/122 (97.54%), Query Frame = -2 
Query:  255 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 620
            RYLTASA FRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKS+VCD+PP GLKMA TF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA
Sbjct:  309 RYLTASACFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDMPPRGLKMAGTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATA 430
[Close]
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBB4_MAIZE (Tubulin beta-4 chain OS=Zea mays GN=TUBB4 PE=2 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 2.269e-62
Identity = 115/122 (94.26%), Postives = 119/122 (97.54%), Query Frame = -2 
Query:  255 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 620
            RYLTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKS+VCDIPP GL MASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT EGMDEMEFTEAESNMNDLV+EYQQYQDATA
Sbjct:  311 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPVGLPMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLVAEYQQYQDATA 432
[Close]
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBB6_GOSHI (Tubulin beta-6 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.963e-62
Identity = 115/121 (95.04%), Postives = 119/121 (98.35%), Query Frame = -2 
Query:  258 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 620
            RYLTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKS+VCDIPP GLK +STFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDAT
Sbjct:  311 RYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKTSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDAT 431
[Close]
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBB5_WHEAT (Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.963e-62
Identity = 116/122 (95.08%), Postives = 119/122 (97.54%), Query Frame = -2 
Query:  255 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 620
            RYLTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKS+VCDI P GL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA
Sbjct:  309 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATA 430
[Close]
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBB8_ORYSJ (Tubulin beta-8 chain OS=Oryza sativa subsp. japonica GN=TUBB8 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 3.870e-62
Identity = 114/122 (93.44%), Postives = 119/122 (97.54%), Query Frame = -2 
Query:  255 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 620
            RYLTASAMFRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNNVKS+VCDIPP GL MASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT EGMDEMEFTEAESNMNDLV+EYQQYQDATA
Sbjct:  309 RYLTASAMFRGRMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPVGLSMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLVAEYQQYQDATA 430
The following BLAST results are available for this feature:
BLAST of DT214566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
TBB3_PEA1.330e-6295.90Tubulin beta-3 chain (Fragment) OS=Pisum sativum G... [more]
TBB_EUPFO1.737e-6293.44Tubulin beta chain OS=Euplotes focardii PE=3 SV=1[more]
TBB_EUPCR1.737e-6293.44Tubulin beta chain OS=Euplotes crassus PE=3 SV=1[more]
TBB_EUPOC2.269e-6292.62Tubulin beta chain OS=Euplotes octocarinatus PE=3 ... [more]
TBB7_GOSHI2.269e-6294.26Tubulin beta-7 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB4_WHEAT2.269e-6294.26Tubulin beta-4 chain OS=Triticum aestivum GN=TUBB4... [more]
TBB4_MAIZE2.269e-6294.26Tubulin beta-4 chain OS=Zea mays GN=TUBB4 PE=2 SV=... [more]
TBB6_GOSHI2.963e-6295.04Tubulin beta-6 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB5_WHEAT2.963e-6295.08Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5... [more]
TBB8_ORYSJ3.870e-6293.44Tubulin beta-8 chain OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_22C01_b2 Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10-2 Citrus sinensis cDNA clone UCRCS10-22C01-E2-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214566 ID=DT214566; Name=DT214566; organism=Citrus sinensis; type=EST; length=861bp
GATTCCAAAGCAAATTGAAGTATCATATTTAAACATACAAGGTTCCAAGA
AAATTAAACAATAAGGGGAAAAGGACGAAAAGATGAAGAAACTATTTCAA
TTAGGCTTCTCCGCTTCTATCTAGATCATGACAAGAAACCAGCAACTGGA
AGTTGAGGTTCCAAAGAATTGCTTCAGAAGCAATCCACCCATCAAAATTA
TTGCTGATAGTCTTCATCAAACTGTTCCTCTTCATCATCATATCCTTCCT
CATCAGCTGTTGCATCTTGGTATTGCTGATACTCTGAAACCAAATCATTC
ATGTTGCTCTCTGCCTCAGTGAACTCCATCTCATCCATACCTTCCCCAGT
ATACCAATGTAAGAAAGCTTTTCTCCTAAACATGGCAGTAAATTGTTCAC
TCACACGCCTGAACATTTCCTGGATAGATGTGGAGTTCCCAATGAACGTG
GAGGCCATCTTCAAACCAGTGGGTGGGATATCACAAACGGTAGACTTCAC
ATTGTTGGGGATCCACTCAACAAAGTATGAGGAGTTCTTGTTCTGAACAT
TCAGCATTTGCTCATCTACTTCCTTGGTGCTCATCTTACCACGGAACATG
GCTGATGCTGTTAGATAGCGGCGTGAGTTTTGAACCTCAGATATTCAATT
TATTCTCTTGAAAAGTAAAAATAAAGATTGAACTCAAATGCACTGAAGCT
CTGATATTTACATAATTATAAACACGAATGTCAATATGTATGCCAGCAGA
CCAACAGACCTTGATAATCTCCTCTCCCCTGCGCCTGCGGTAGTATCTGT
TTTGATCATGATCCTGAATAGGCAATCCCCTGTGGATGGATTTGTGGTGG
TAACAGCCGAA
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