DT214526 | Citrus Genome Database

Overview


Name	DT214526
Unique Name	DT214526
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	575

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DT214526 vs. ExPASy Swiss-Prot
Match: RS26_PIG (40S ribosomal protein S26 OS=Sus scrofa GN=RPS26 PE=3 SV=4)

HSP 1 Score: 130.568 bits (327), Expect = 5.462e-30
Identity = 67/120 (55.83%), Postives = 78/120 (65.00%), Query Frame = -2

Query:  170 MTFKRRNGGLNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHSHXXXXXXXXXXXXREPPKRFMRRRDDLPKPGQPGQAPRP 529
            MT KRRN G  K GRGHV  IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ +A ++D YVLPKLY K+ YCVSCAIHS             R PP RF        +P   G APRP
Sbjct:    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPRF--------RPA--GAAPRP 110

[Close]

BLAST of DT214526 vs. ExPASy Swiss-Prot
Match: RS26_MOUSE (40S ribosomal protein S26 OS=Mus musculus GN=Rps26 PE=2 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 5.462e-30
Identity = 67/120 (55.83%), Postives = 78/120 (65.00%), Query Frame = -2

Query:  170 MTFKRRNGGLNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHSHXXXXXXXXXXXXREPPKRFMRRRDDLPKPGQPGQAPRP 529
            MT KRRN G  K GRGHV  IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ +A ++D YVLPKLY K+ YCVSCAIHS             R PP RF        +P   G APRP
Sbjct:    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPRF--------RPA--GAAPRP 110

[Close]

BLAST of DT214526 vs. ExPASy Swiss-Prot
Match: RS26_MACFA (40S ribosomal protein S26 OS=Macaca fascicularis GN=RPS26 PE=3 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 5.462e-30
Identity = 67/120 (55.83%), Postives = 78/120 (65.00%), Query Frame = -2

Query:  170 MTFKRRNGGLNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHSHXXXXXXXXXXXXREPPKRFMRRRDDLPKPGQPGQAPRP 529
            MT KRRN G  K GRGHV  IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ +A ++D YVLPKLY K+ YCVSCAIHS             R PP RF        +P   G APRP
Sbjct:    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPRF--------RPA--GAAPRP 110

[Close]

BLAST of DT214526 vs. ExPASy Swiss-Prot
Match: RS26_HUMAN (40S ribosomal protein S26 OS=Homo sapiens GN=RPS26 PE=1 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 5.462e-30
Identity = 67/120 (55.83%), Postives = 78/120 (65.00%), Query Frame = -2

Query:  170 MTFKRRNGGLNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHSHXXXXXXXXXXXXREPPKRFMRRRDDLPKPGQPGQAPRP 529
            MT KRRN G  K GRGHV  IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ +A ++D YVLPKLY K+ YCVSCAIHS             R PP RF        +P   G APRP
Sbjct:    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPRF--------RPA--GAAPRP 110

[Close]

BLAST of DT214526 vs. ExPASy Swiss-Prot
Match: RS26_BOVIN (40S ribosomal protein S26 OS=Bos taurus GN=RPS26 PE=3 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 5.462e-30
Identity = 67/120 (55.83%), Postives = 78/120 (65.00%), Query Frame = -2

Query:  170 MTFKRRNGGLNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHSHXXXXXXXXXXXXREPPKRFMRRRDDLPKPGQPGQAPRP 529
            MT KRRN G  K GRGHV  IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ +A ++D YVLPKLY K+ YCVSCAIHS             R PP RF        +P   G APRP
Sbjct:    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPRF--------RPA--GAAPRP 110

[Close]

BLAST of DT214526 vs. ExPASy Swiss-Prot
Match: RS26B_SCHPO (40S ribosomal protein S26-B OS=Schizosaccharomyces pombe GN=rps26b PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.133e-30
Identity = 60/106 (56.60%), Postives = 71/106 (66.98%), Query Frame = -2

Query:  212 MTFKRRNGGLNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHSHXXXXXXXXXXXXREPPKRFMRRRD 529
            MT KRRN G NKHGRGHV F+RC NC +  PKDKAIKR+ +RN+VE AA+RD+ +A +Y  Y +PKLY K+QYCVSCAIHS             R PP R    RD
Sbjct:    1 MTQKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYSEYTIPKLYIKLQYCVSCAIHSRVVRVRSREGRRIRTPPPRVRYNRD 106

[Close]

BLAST of DT214526 vs. ExPASy Swiss-Prot
Match: RS26_SHEEP (40S ribosomal protein S26 OS=Ovis aries GN=RPS26 PE=3 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 9.316e-30
Identity = 67/120 (55.83%), Postives = 78/120 (65.00%), Query Frame = -2

Query:  170 MTFKRRNGGLNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHSHXXXXXXXXXXXXREPPKRFMRRRDDLPKPGQPGQAPRP 529
            MT KRRN G  K GRGHV  IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ +A ++D YVLPKLY K+ YCVSCAIHS             R PP RF        +P   G APRP
Sbjct:    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEAGVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPRF--------RPA--GAAPRP 110

[Close]

BLAST of DT214526 vs. ExPASy Swiss-Prot
Match: RS26_CRICR (40S ribosomal protein S26 OS=Cricetus cricetus GN=RPS26 PE=3 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 1.589e-29
Identity = 66/120 (55.00%), Postives = 78/120 (65.00%), Query Frame = -2

Query:  170 MTFKRRNGGLNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHSHXXXXXXXXXXXXREPPKRFMRRRDDLPKPGQPGQAPRP 529
            MT KRRN G  K GRGHV  IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ +A ++D YVLPKLY ++ YCVSCAIHS             R PP RF        +P   G APRP
Sbjct:    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVELHYCVSCAIHSKVVRNRSREARKDRTPPPRF--------RPA--GAAPRP 110

[Close]

BLAST of DT214526 vs. ExPASy Swiss-Prot
Match: RS26_BRUPA (40S ribosomal protein S26 (Fragment) OS=Brugia pahangi PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.075e-29
Identity = 59/81 (72.84%), Postives = 66/81 (81.48%), Query Frame = -2

Query:  287 MTFKRRNGGLNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHS 529
            MT KRRN G NK GRGHV  IRC+NCG+C PKDKAIK+F+VRNIV  AAVRD+ DA  YD+Y LPKLY K+ YCVSCAIHS
Sbjct:    1 MTTKRRNHGRNKKGRGHVRPIRCTNCGRCAPKDKAIKKFVVRNIVVAAAVRDISDASAYDSYALPKLYHKLHYCVSCAIHS 81

[Close]

BLAST of DT214526 vs. ExPASy Swiss-Prot
Match: RS26A_SCHPO (40S ribosomal protein S26-A OS=Schizosaccharomyces pombe GN=rps26a PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.295e-28
Identity = 57/106 (53.77%), Postives = 70/106 (66.04%), Query Frame = -2

Query:  212 MTFKRRNGGLNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHSHXXXXXXXXXXXXREPPKRFMRRRD 529
            MT KRRN G NKHGRGH  F+RC NC +  PKDKAIKR+ +RN+VE AA+RD+ +A +Y  Y +PK+Y K+QYCVSCAIH+             R PP R    RD
Sbjct:    1 MTQKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYSEYAIPKIYVKLQYCVSCAIHARVVRVRSREGRRIRTPPPRVRYNRD 106

The following BLAST results are available for this feature:

BLAST of DT214526 vs. ExPASy Swiss-Prot

BLAST of DT214526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27


Match Name	E-value	Identity	Description
RS26_PIG	5.462e-30	55.83	40S ribosomal protein S26 OS=Sus scrofa GN=RPS26 P...	[more]
RS26_MOUSE	5.462e-30	55.83	40S ribosomal protein S26 OS=Mus musculus GN=Rps26...	[more]
RS26_MACFA	5.462e-30	55.83	40S ribosomal protein S26 OS=Macaca fascicularis G...	[more]
RS26_HUMAN	5.462e-30	55.83	40S ribosomal protein S26 OS=Homo sapiens GN=RPS26...	[more]
RS26_BOVIN	5.462e-30	55.83	40S ribosomal protein S26 OS=Bos taurus GN=RPS26 P...	[more]
RS26B_SCHPO	7.133e-30	56.60	40S ribosomal protein S26-B OS=Schizosaccharomyces...	[more]
RS26_SHEEP	9.316e-30	55.83	40S ribosomal protein S26 OS=Ovis aries GN=RPS26 P...	[more]
RS26_CRICR	1.589e-29	55.00	40S ribosomal protein S26 OS=Cricetus cricetus GN=...	[more]
RS26_BRUPA	2.075e-29	72.84	40S ribosomal protein S26 (Fragment) OS=Brugia pah...	[more]
RS26A_SCHPO	2.295e-28	53.77	40S ribosomal protein S26-A OS=Schizosaccharomyces...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS08_57D08_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-57D08-G16-1-5.d-polyt, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DT214526 ID=DT214526; Name=DT214526; organism=Citrus sinensis; type=EST; length=575bp
GAATTAAAAATCCCAAAATTTTAACAATAATTCTTAAGACTTTGAAAAAG
AATAATGCGGCACATATTGAAACTTCCTACACAAAATTCAAGTGCTTGTA
GATATCTAAAAGCATAATAGCAGATTAAGAATGGAATAGACTTCATGGGC
GAACTGGAACTCCGATGGCTGGGCGTGGCGCTTGACCAGGCTGACCAGGC
TTTGGCAAATCATCCCTGCGTCTCATAAAACGCTTTGGTGGTTCACGGTT
CCTGCGGTCAGTGCGCGAGCGAACCCTCACCACATGCGAGTGAATTGCAC
AGGAGACACAGTACTGCATCTTTGCATACAACTTAGGCAGAACATAGTTA
TCATAGATGCAGGCATCCTGCACGTCTCTGACAGCAGCTTGCTCAACAAT
GTTCCTCACAAGGAACCTCTTGATGGCCTTGTCTTTGGGGCAGCATTTGC
CGCAGTTGGAGCAGCGGATGAAGTTGACGTGGCCACGGCCGTGCTTGTTG
AGGCCGCCGTTCCGGCGCTTGAAGGTCATTCTGTTTTCTTCAAGGGATGA
AGGCGGCGACAGGCGAGATTTGCCT