DT214526

Overview
NameDT214526
Unique NameDT214526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214526 vs. ExPASy Swiss-Prot
Match: RS26_NEUCR (40S ribosomal protein S26E OS=Neurospora crassa GN=rps-26 PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 5.112e-28
Identity = 57/106 (53.77%), Postives = 69/106 (65.09%), Query Frame = -2
Query:  212 MTFKRRNGGLNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHSHXXXXXXXXXXXXREPPKRFMRRRD 529
            M  KR+N G NK GRGHV  IRCSNC +C PKDKAIKRF +RN+VE AA+RD+ DA ++  Y +PK+Y K+QYCVSCAIH              R PP R    +D
Sbjct:    1 MVKKRKNNGRNKKGRGHVKPIRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYTVPKMYLKLQYCVSCAIHGKIVRVRSREGRRNRAPPPRVRYNKD 106          
BLAST of DT214526 vs. ExPASy Swiss-Prot
Match: RS26L_HUMAN (Putative 40S ribosomal protein S26-like 1 OS=Homo sapiens GN=RPS26P11 PE=5 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.139e-27
Identity = 64/120 (53.33%), Postives = 75/120 (62.50%), Query Frame = -2
Query:  170 MTFKRRNGGLNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHSHXXXXXXXXXXXXREPPKRFMRRRDDLPKPGQPGQAPRP 529
            MT KRRN    K GRGHV  IRC+NC +C P DKAIK+F++RNIVE AAVRD+ +  ++D YVLPKLY K+ YCVSCAIHS             R PP RF        +P   G APRP
Sbjct:    1 MTKKRRNNSHAKKGRGHVQPIRCTNCVRCVPTDKAIKKFVIRNIVEAAAVRDISEVSVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRSREACKDRTPPPRF--------RPA--GAAPRP 110          
BLAST of DT214526 vs. ExPASy Swiss-Prot
Match: RS26B_YEAST (40S ribosomal protein S26-B OS=Saccharomyces cerevisiae GN=RPS26B PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.290e-25
Identity = 57/111 (51.35%), Postives = 67/111 (60.36%), Query Frame = -2
Query:  197 MTFKRRNGGLNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHSHXXXXXXXXXXXXREPPKRFMRRRDDLPKP 529
            M  KR + G NK GRGHV  +RC NC K  PKDKAIKR  +RNIVE AAVRD+ +A +Y  Y LPK Y K+ YCVSCAIH+             R PP+R    RD+   P
Sbjct:    1 MPKKRASNGRNKKGRGHVKPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVRDLSEASVYPEYALPKTYNKLHYCVSCAIHARIVRVRSREDRKNRAPPQRPRFNRDNKVSP 111          
BLAST of DT214526 vs. ExPASy Swiss-Prot
Match: RS26_DICDI (40S ribosomal protein S26 OS=Dictyostelium discoideum GN=rps26 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.178e-24
Identity = 50/84 (59.52%), Postives = 63/84 (75.00%), Query Frame = -2
Query:  284 MTFKRRNGGLNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD--NYVLPKLYAKMQYCVSCAIHSH 529
            MT KRRN G +KHGRG V +IRC+NC +C PKDKA+KRF +R IVE AAV+D+ D  +++   Y  P+ Y K QYC+SCAIHSH
Sbjct:    1 MTQKRRNHGRSKHGRGSVPYIRCTNCARCVPKDKAVKRFYIRPIVENAAVKDISDQGVFNVKGYKFPRTYVKSQYCISCAIHSH 84          
BLAST of DT214526 vs. ExPASy Swiss-Prot
Match: RS26A_YEAST (40S ribosomal protein S26-A OS=Saccharomyces cerevisiae GN=RPS26A PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.539e-24
Identity = 56/111 (50.45%), Postives = 67/111 (60.36%), Query Frame = -2
Query:  197 MTFKRRNGGLNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHSHXXXXXXXXXXXXREPPKRFMRRRDDLPKP 529
            M  KR + G NK GRGHV  +RC NC K  PKDKAIKR  +RNIVE AAVRD+ +A +Y  Y LPK Y K+ YCVSCAIH+             R PP+R    R++   P
Sbjct:    1 MPKKRASNGRNKKGRGHVKPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVRDLSEASVYPEYALPKTYNKLHYCVSCAIHARIVRVRSREDRKNRAPPQRPRFNRENKVSP 111          
BLAST of DT214526 vs. ExPASy Swiss-Prot
Match: RS26_OXYNO (40S ribosomal protein S26 OS=Oxytricha nova GN=RPS26 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.491e-19
Identity = 42/83 (50.60%), Postives = 59/83 (71.08%), Query Frame = -2
Query:  287 MTFKRRNGGLNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIY--DNYVLPKLYAKMQYCVSCAIHS 529
            M  KRRN G NK  +GH + +RC+NCG+   KDKAIKRF  RN+V+ ++ RD+Q+   Y   ++ +PK+Y K+ YCVSCAIH+
Sbjct:    1 MPSKRRNNGRNKKNKGHADTVRCTNCGRVVSKDKAIKRFQQRNMVDASSKRDIQENYAYAQSDFTMPKIYVKLSYCVSCAIHA 83          
BLAST of DT214526 vs. ExPASy Swiss-Prot
Match: RS26_ENCCU (40S ribosomal protein S26 OS=Encephalitozoon cuniculi GN=RPS26 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.489e-16
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = -2
Query:  287 RRNGGLNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHS 517
            RRN G  K  RG    I+C  CG   PKDKAIKRF +++++EQA+  D++ A IYD + +P++  K Q+CVSCA H+
Sbjct:    2 RRNHGRGKKNRGSAGSIQCDKCGSVTPKDKAIKRFRIQSLIEQASFDDLKQATIYDVFEVPRMGYKSQFCVSCACHA 78          
The following BLAST results are available for this feature:
BLAST of DT214526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RS26_NEUCR5.112e-2853.7740S ribosomal protein S26E OS=Neurospora crassa GN... [more]
RS26L_HUMAN1.139e-2753.33Putative 40S ribosomal protein S26-like 1 OS=Homo ... [more]
RS26B_YEAST5.290e-2551.3540S ribosomal protein S26-B OS=Saccharomyces cerev... [more]
RS26_DICDI1.178e-2459.5240S ribosomal protein S26 OS=Dictyostelium discoid... [more]
RS26A_YEAST1.539e-2450.4540S ribosomal protein S26-A OS=Saccharomyces cerev... [more]
RS26_OXYNO1.491e-1950.6040S ribosomal protein S26 OS=Oxytricha nova GN=RPS... [more]
RS26_ENCCU4.489e-1648.0540S ribosomal protein S26 OS=Encephalitozoon cunic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_57D08_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-57D08-G16-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214526 ID=DT214526; Name=DT214526; organism=Citrus sinensis; type=EST; length=575bp
GAATTAAAAATCCCAAAATTTTAACAATAATTCTTAAGACTTTGAAAAAG
AATAATGCGGCACATATTGAAACTTCCTACACAAAATTCAAGTGCTTGTA
GATATCTAAAAGCATAATAGCAGATTAAGAATGGAATAGACTTCATGGGC
GAACTGGAACTCCGATGGCTGGGCGTGGCGCTTGACCAGGCTGACCAGGC
TTTGGCAAATCATCCCTGCGTCTCATAAAACGCTTTGGTGGTTCACGGTT
CCTGCGGTCAGTGCGCGAGCGAACCCTCACCACATGCGAGTGAATTGCAC
AGGAGACACAGTACTGCATCTTTGCATACAACTTAGGCAGAACATAGTTA
TCATAGATGCAGGCATCCTGCACGTCTCTGACAGCAGCTTGCTCAACAAT
GTTCCTCACAAGGAACCTCTTGATGGCCTTGTCTTTGGGGCAGCATTTGC
CGCAGTTGGAGCAGCGGATGAAGTTGACGTGGCCACGGCCGTGCTTGTTG
AGGCCGCCGTTCCGGCGCTTGAAGGTCATTCTGTTTTCTTCAAGGGATGA
AGGCGGCGACAGGCGAGATTTGCCT
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