DT214510

Overview
NameDT214510
Unique NameDT214510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_AZOC5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=dxs PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.235e-30
Identity = 67/133 (50.38%), Postives = 87/133 (65.41%), Query Frame = -2
Query:  191 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 589
            IGKG+V  EG+D+A L  G  +  CL     LS LGI  TVADARF KP+D +L+  L + H  L+ VEEGS+GGFGS V  F++ +GL+D G+K R + LPD YI+H +P  QLA AGL    I   AL+L+
Sbjct:  495 IGKGRVVREGQDIAFLSLGTRLAACLDVAERLSSLGISATVADARFAKPIDRELIAHLARTHAALVVVEEGSVGGFGSQVLQFLSDEGLMDGGLKVRALTLPDTYIDHDTPAAQLAEAGLDADGIYKRALALV 627          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_RHOPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisB5) GN=dxs PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.813e-30
Identity = 68/140 (48.57%), Postives = 87/140 (62.14%), Query Frame = -2
Query:  173 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTREA 592
            EIGKG+V  +G  VALL +G  +  C KA   L+ LG+  TVADARF KPLD+ LV +L   H  LIT+EEGS+GGFG+HV   +A  G LD  VK R +VLPD +++H +PT   A AGL    I       LG+  +A
Sbjct:  493 EIGKGRVIRQGNKVALLSFGTRLAECEKAAEELAALGLSTTVADARFMKPLDVDLVLKLANEHEILITIEEGSIGGFGTHVMQTLAEHGKLDGEVKMRAMVLPDVFLDHDTPTAMYANAGLDAKAIVKKVFEALGKEHKA 632          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_RHIME (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium meliloti GN=dxs PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.813e-30
Identity = 65/135 (48.15%), Postives = 89/135 (65.93%), Query Frame = -2
Query:  185 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 589
            IGKG++  +G  VALL +G  + +CL A   L   G+  TVADARF KPLD  L+R+L ++H  LIT+EEG++GGF SHV  F+A +GL+D G+K RP+V+PD ++E A P    A AGL    I +T    LG+
Sbjct:  501 IGKGRIVKQGNKVALLSFGTRLADCLLAAEDLDAAGLSTTVADARFAKPLDHDLIRQLARHHEVLITIEEGAVGGFASHVLQFLAEEGLIDGGLKVRPMVMPDIWMEQAKPEAMYARAGLDRAGIVSTVFKALGQ 635          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_MAGSA (1-deoxy-D-xylulose-5-phosphate synthase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=dxs PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.813e-30
Identity = 69/140 (49.29%), Postives = 87/140 (62.14%), Query Frame = -2
Query:  170 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTREAL 589
            IGKG+V  EG  VA+L  G  +   LKA   L+  G+  TV DARF KPLD +L+  L + H  LITVEEGS+GGFGSHV H +A  G LD+G+K RP+ LPD ++EH +P  Q    GL    I AT L+ LG  R  +
Sbjct:  503 IGKGRVVREGNRVAILSLGTRLAEALKAADELAARGLAPTVVDARFMKPLDEELILRLAREHEVLITVEEGSVGGFGSHVLHLLASKGALDNGLKVRPLALPDVFVEHDAPAIQYEKIGLNASGIVATVLATLGEARSVV 642          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BRUO2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=dxs PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.813e-30
Identity = 68/136 (50.00%), Postives = 83/136 (61.03%), Query Frame = -2
Query:  185 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 592
            EIGKG++  EG  VALL +G  +Q CL A   L   G+  TV DARF KPLD  L+R L + H  L+ VEEG++GGFGSHV  F+A DGLLD G+K R + LPD Y +H  P    A AGL    I  T  + L R
Sbjct:  494 EIGKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVVDARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGLKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAALHR 629          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_RHOP5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisA53) GN=dxs PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.980e-30
Identity = 66/138 (47.83%), Postives = 88/138 (63.77%), Query Frame = -2
Query:  179 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTR 592
            EIGKG+V  +G  +ALL +G  +  C KA   L+ LG+  TVADARF KPLD++LV +L + H  LITVEEGS+GGFGSHV   +A  G+LD  V+ R +VLPD +++H +P    A AGL    I       LG+ +
Sbjct:  496 EIGKGRVVRQGNKIALLSFGTRLAECEKAADELATLGLSTTVADARFMKPLDVELVLKLAREHEVLITVEEGSIGGFGSHVMQTLAEHGMLDGEVRMRSLVLPDEFMDHDTPAVMYARAGLDAKGIVKKVFEALGKDK 633          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_RHIE6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium etli (strain CIAT 652) GN=dxs PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.980e-30
Identity = 67/136 (49.26%), Postives = 90/136 (66.18%), Query Frame = -2
Query:  185 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 592
            +IGKG++  EG  VALL +G  + +CL A   L   G+  TVADARF KPLD  L+R+L ++H  LITVEEGS+GGFGS V  +++ +GLLD+G+K R +V+PD ++E A P    A AGL    I +T    LGR
Sbjct:  495 QIGKGRIVKEGTKVALLSFGTRLADCLLAAEDLEAAGLSTTVADARFAKPLDHDLIRQLARHHEMLITVEEGSVGGFGSQVMQYLSSEGLLDNGLKIRSLVMPDIWMEQAKPEAMNAHAGLDRAGIVSTVFRALGR 630          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BRUAB (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella abortus GN=dxs PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.980e-30
Identity = 68/136 (50.00%), Postives = 84/136 (61.76%), Query Frame = -2
Query:  185 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 592
            EIGKG++  EG  VALL +G  +Q CL A   L   G+  TVADARF KPLD  L+R L + H  L+ VEEG++GGF SHV  F+A DGLLD G+K R ++LPD Y +H  P    A AGL    I  T  + L R
Sbjct:  494 EIGKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFSSHVLQFLATDGLLDRGLKVRALMLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAALHR 629          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BRUA1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella abortus (strain S19) GN=dxs PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.980e-30
Identity = 68/136 (50.00%), Postives = 84/136 (61.76%), Query Frame = -2
Query:  185 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 592
            EIGKG++  EG  VALL +G  +Q CL A   L   G+  TVADARF KPLD  L+R L + H  L+ VEEG++GGF SHV  F+A DGLLD G+K R ++LPD Y +H  P    A AGL    I  T  + L R
Sbjct:  494 EIGKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFSSHVLQFLATDGLLDRGLKVRALMLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAALHR 629          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_AGRRK (1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=dxs PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.980e-30
Identity = 67/137 (48.91%), Postives = 89/137 (64.96%), Query Frame = -2
Query:  182 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRT 592
            EIGKG++  +G  VALL +G  + + L A   L   G+  TVADARF KPLD  L+R+L  +H  LIT+EEGS+GGFGS V  F+A +GLLD+G+K R +V+PD ++E A P    A+AGL    I  T    LGR+
Sbjct:  495 EIGKGRIVKQGSKVALLSFGTRLADSLAAAEDLDAAGLPTTVADARFAKPLDHDLIRQLASHHEVLITIEEGSVGGFGSQVMQFLASEGLLDNGLKIRTLVMPDIWVEQAKPEVMNAMAGLDRAGIVQTVFKALGRS 631          
The following BLAST results are available for this feature:
BLAST of DT214510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
DXS_AZOC52.235e-3050.381-deoxy-D-xylulose-5-phosphate synthase OS=Azorhiz... [more]
DXS_RHOPS3.813e-3048.571-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_RHIME3.813e-3048.151-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_MAGSA3.813e-3049.291-deoxy-D-xylulose-5-phosphate synthase OS=Magneto... [more]
DXS_BRUO23.813e-3050.001-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_RHOP54.980e-3047.831-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_RHIE64.980e-3049.261-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_BRUAB4.980e-3050.001-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUA14.980e-3050.001-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_AGRRK4.980e-3048.911-deoxy-D-xylulose-5-phosphate synthase OS=Agrobac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_21F06_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-21F06-K11-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214510 ID=DT214510; Name=DT214510; organism=Citrus sinensis; type=EST; length=722bp
TTAATTTACAATGACGTACCCAACATTAAGAAAAACAGTTGATCTATATT
TGGTTCTTGCCCTCTCTTATGTTTTTGTTGTTCCCTCATCCTTTCTAATA
AGTGAATTTACCAATCTGGGAAACTCAAATGCCAAAAAGAAAACTCGGGG
GTTTCTAGCACATTAAAAGGAGGGCTTCACGGGTGCGCCCGAGCAAACTT
AATGCTGTAGCAGCAATGTGATGTCCAGTGAGTCCCGCAAGAGCAAGCTG
TTGGGTTGGTGATGCATGTTCAATATAGTTGTCTGGTAAAACAATTGGTC
TCCACTTAACTCCTGAATCAAGCAGTCCGTCAAGGGCAATGAAGTGTGAA
ACATGTGAACCAAATCCTCCAAGGGAGCCTTCCTCAACTGTTATCAAAAA
TGTATGGTTTTGACAAAGCTCCCTGACCAGCTTAATATCTAGGGGCTTGC
AAAATCTTGCATCAGCCACAGTAACATCAATGCCAAGCTTTGAAAGAAGG
GCCCGAGCTTTCAGGCAGTTCTGAACCATTGCCCCATATCCAAGCAAAGC
AACATCTTTGCCCTCTACAAAAACTTTCCCTTTTCCAATCTCCTCAAATC
AAATTCAAGCAAAGTTTGAAAATGACTAATGAAGAATAATAAAAAAGCAA
AATGGAATATGCAAGTAAGTCATAAAATTGATAAAAATAACTTAATATTT
TGGACAATGTTTACCTTAACCC
back to top