DT214510

Overview
NameDT214510
Unique NameDT214510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BART1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=dxs PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.506e-29
Identity = 62/136 (45.59%), Postives = 88/136 (64.71%), Query Frame = -2
Query:  185 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 592
            EIGKG+V  EG  +AL+ +G  +   L+A   L   G+  TVADARF KPLD  L+R L + H  L+T+EEG++GGFG+H+  F+A +GLL+ G+K R +  PD Y+ H SP + L+  GL    I  T L+++GR
Sbjct:  495 EIGKGRVLREGNRIALVCFGTRMSEVLRAADRLGAKGLSTTVADARFAKPLDKDLMRRLAREHEVLVTIEEGAIGGFGAHLLQFLAQEGLLEHGLKVRTLKFPDEYLNHGSPEKVLSTIGLDAMGIVNTVLTVVGR 630          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BRASB (1-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=dxs PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.191e-29
Identity = 63/135 (46.67%), Postives = 86/135 (63.70%), Query Frame = -2
Query:  185 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 589
            IGKG++  +GK VALL +G  +  C KA   L+  G+  ++ADARF KPLD +LV +L + H  LIT+EEGS+GGFGSHV  ++A  G+LD G+K R +VLPD + +H +P    A AGL    I       LG+
Sbjct:  497 IGKGRMIRQGKQVALLSFGTRLAECEKAADELAAHGLSASIADARFMKPLDEELVLKLAREHEILITIEEGSIGGFGSHVMQYLADQGMLDGGLKMRSMVLPDEFQDHDTPAAMYARAGLDAKGIVRKVFEALGK 631          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SILST (1-deoxy-D-xylulose-5-phosphate synthase OS=Silicibacter sp. (strain TM1040) GN=dxs PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.392e-29
Identity = 63/138 (45.65%), Postives = 87/138 (63.04%), Query Frame = -2
Query:  179 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTR 592
            EIGKG++  EG  VALL +G  +    KA   L+  GI  TVADARF KPLD  ++  L + H  LIT+EEG++GGFGSHV+  ++ + + D+G+K+R +VLPD +I+ ASP      A +   HI A  L +LG  R
Sbjct:  499 EIGKGRIIEEGSRVALLSFGTRLGEVRKAAEALAARGITPTVADARFAKPLDRDMILSLAEKHEALITIEEGAVGGFGSHVAQLLSEEAVFDTGLKFRSMVLPDTFIDQASPKDMYDSAAMNAEHIEAKVLDVLGVAR 636          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SILPO (1-deoxy-D-xylulose-5-phosphate synthase OS=Silicibacter pomeroyi GN=dxs PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.602e-28
Identity = 63/135 (46.67%), Postives = 88/135 (65.19%), Query Frame = -2
Query:  188 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 592
            EIGKG++  +G  VALL +G  +    KA   L+  GI  T+ADARF KPLD  L+  L  +H  LIT+EEG++GGFGSHV+  +A +G+ D G+K+R +VLPD +I+ +SP    A+AG+    I A  L +LG
Sbjct:  499 EIGKGRMIQKGARVALLSFGTRLTEVQKAAEALAARGITPTIADARFAKPLDRDLILNLAHDHEALITIEEGAVGGFGSHVAQLLADEGVFDHGLKFRSMVLPDIFIDQSSPADMYAVAGMNAPQIEAKVLDVLG 633          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS1_RHORT (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.733e-28
Identity = 63/133 (47.37%), Postives = 85/133 (63.91%), Query Frame = -2
Query:  191 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 589
            IGKG++  EGK VALL  G  +Q+CL+A  +L+  G+  TVADARF KP D +LV +L   H  LI VEEG++GGFG+HV+ ++   GLLD G+K R + +PD + EH +P  Q A AG+    I    L  L
Sbjct:  498 IGKGRIVREGKGVALLSIGTRLQSCLEACEILAARGLTPTVADARFLKPFDEELVADLAARHEVLIVVEEGAIGGFGAHVATWLTNQGLLDGGLKLRALHIPDRFFEHDAPEVQCAKAGIDAQAITTAVLDAL 630          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PELUB (1-deoxy-D-xylulose-5-phosphate synthase OS=Pelagibacter ubique GN=dxs PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.569e-28
Identity = 61/134 (45.52%), Postives = 86/134 (64.18%), Query Frame = -2
Query:  191 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 592
            EIGKG+V  EGK V +L  G  ++ C  A A L   GI+ T+ DARF KPLD +L+ +  + H  +ITVEEGS+GGFGSHV + ++  G+ D G+K+R ++LPD +IE  SP +   +AGL    I+   L +L
Sbjct:  493 EIGKGRVIQEGKQVCILSIGTRLEECKIAAAELKNKGIESTIVDARFAKPLDQELILKCAREHEAMITVEEGSIGGFGSHVENLLSEKGIFDKGLKFRTMILPDIFIEQDSPKKMYDVAGLNASQISKKILDIL 626          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BARHE (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella henselae GN=dxs PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.569e-28
Identity = 63/136 (46.32%), Postives = 86/136 (63.24%), Query Frame = -2
Query:  185 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 592
            EIGKG++  EG  +AL+ +G  +   L A   LS  G+  TVADARF KPLD  L+R L + H  L+T+EEG++GGFG+H+  F+A +GLL+ G+K R + LPD Y+ H S  + L+  GL    I  T  S LGR
Sbjct:  495 EIGKGRILHEGNRIALVCFGTRISEVLVAADELSAEGLSTTVADARFAKPLDKDLMRRLAREHEVLVTIEEGAIGGFGAHLLQFLAQEGLLEHGLKVRTLKLPDEYLNHGSQEKVLSRIGLDAVGIVNTVFSALGR 630          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS2_RHORT (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.661e-28
Identity = 64/133 (48.12%), Postives = 85/133 (63.91%), Query Frame = -2
Query:  191 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 589
            IGKG++  EGK VALL  G  +Q+CL+A  +L+  G+  TVADARF KP D +LV +L   H  LI VEEG++GGF SHV+ ++A  GLLD G+K R + +PD + EH +P  Q A AG+    I    L  L
Sbjct:  498 IGKGRIVREGKGVALLSIGTRLQSCLEACEILAARGLTPTVADARFLKPFDEELVADLAARHEVLIVVEEGAIGGFCSHVATWLANQGLLDGGLKLRALHIPDRFFEHDAPEVQCAKAGIDAQAITTAVLDAL 630          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_NITHX (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=dxs PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.313e-27
Identity = 64/136 (47.06%), Postives = 85/136 (62.50%), Query Frame = -2
Query:  185 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSG-VKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 589
            IGKG++  +G  VALL  G  +  C KA   L+  G+  T+ADARF KPLD+ LV +L ++H  LIT+EEGS+GGFGSHV   +A  G LDSG V+ R +VLPD +++H +P    A  GL    I A     LG+
Sbjct:  523 IGKGRIVRQGSKVALLSLGTRLAECEKAADELAAHGLSTTIADARFMKPLDVDLVLKLARDHDVLITIEEGSIGGFGSHVMQTLAEHGALDSGQVRVRAMVLPDEFLDHDTPNAMYASVGLDDRGIVAKVFEALGK 658          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_NITWN (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=dxs PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.946e-27
Identity = 61/136 (44.85%), Postives = 85/136 (62.50%), Query Frame = -2
Query:  185 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSG-VKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 589
            IGKG++  +G  +ALL +G  +  C KA   L+  G+  T+ADARF KPLD+ L  +L + H  LIT+EEGS+GGFGSHV   +  +G LD G V+ R ++LPD +++H +PT   A AGL    I A     LG+
Sbjct:  521 IGKGRIVRQGSKIALLSFGTRLAECEKAADELAAHGLSTTIADARFMKPLDVDLALKLAREHDVLITIEEGSIGGFGSHVMQTLMDNGALDGGLVRVRSMILPDEFLDHDTPTAMYARAGLDAKGIVAKVFEALGK 656          
The following BLAST results are available for this feature:
BLAST of DT214510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
DXS_BART15.506e-2945.591-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_BRASB7.191e-2946.671-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrh... [more]
DXS_SILST9.392e-2945.651-deoxy-D-xylulose-5-phosphate synthase OS=Silicib... [more]
DXS_SILPO1.602e-2846.671-deoxy-D-xylulose-5-phosphate synthase OS=Silicib... [more]
DXS1_RHORT2.733e-2847.371-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodo... [more]
DXS_PELUB3.569e-2845.521-deoxy-D-xylulose-5-phosphate synthase OS=Pelagib... [more]
DXS_BARHE3.569e-2846.321-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS2_RHORT4.661e-2848.121-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodo... [more]
DXS_NITHX2.313e-2747.061-deoxy-D-xylulose-5-phosphate synthase OS=Nitroba... [more]
DXS_NITWN3.946e-2744.851-deoxy-D-xylulose-5-phosphate synthase OS=Nitroba... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_21F06_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-21F06-K11-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214510 ID=DT214510; Name=DT214510; organism=Citrus sinensis; type=EST; length=722bp
TTAATTTACAATGACGTACCCAACATTAAGAAAAACAGTTGATCTATATT
TGGTTCTTGCCCTCTCTTATGTTTTTGTTGTTCCCTCATCCTTTCTAATA
AGTGAATTTACCAATCTGGGAAACTCAAATGCCAAAAAGAAAACTCGGGG
GTTTCTAGCACATTAAAAGGAGGGCTTCACGGGTGCGCCCGAGCAAACTT
AATGCTGTAGCAGCAATGTGATGTCCAGTGAGTCCCGCAAGAGCAAGCTG
TTGGGTTGGTGATGCATGTTCAATATAGTTGTCTGGTAAAACAATTGGTC
TCCACTTAACTCCTGAATCAAGCAGTCCGTCAAGGGCAATGAAGTGTGAA
ACATGTGAACCAAATCCTCCAAGGGAGCCTTCCTCAACTGTTATCAAAAA
TGTATGGTTTTGACAAAGCTCCCTGACCAGCTTAATATCTAGGGGCTTGC
AAAATCTTGCATCAGCCACAGTAACATCAATGCCAAGCTTTGAAAGAAGG
GCCCGAGCTTTCAGGCAGTTCTGAACCATTGCCCCATATCCAAGCAAAGC
AACATCTTTGCCCTCTACAAAAACTTTCCCTTTTCCAATCTCCTCAAATC
AAATTCAAGCAAAGTTTGAAAATGACTAATGAAGAATAATAAAAAAGCAA
AATGGAATATGCAAGTAAGTCATAAAATTGATAAAAATAACTTAATATTT
TGGACAATGTTTACCTTAACCC
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