DT214510

Overview
NameDT214510
Unique NameDT214510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_MARMM (1-deoxy-D-xylulose-5-phosphate synthase OS=Maricaulis maris (strain MCS10) GN=dxs PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.946e-27
Identity = 62/136 (45.59%), Postives = 83/136 (61.03%), Query Frame = -2
Query:  185 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 592
            EIGKG++  EG  +A+L  G  ++  LKA   L+  G   TVADARF KPLD  L+  L + H  LITVEEG++GGFG+ V H +A  G LD G++ R + LPD + +  +P      AGL   HIAA AL  +G+
Sbjct:  493 EIGKGRIVREGSRIAILSLGTRLEESLKAADALAAQGFSTTVADARFAKPLDEDLILRLAREHEVLITVEEGAVGGFGAFVLHMLADKGALDRGLRIRTLTLPDVFQDQEAPFDMYETAGLNARHIAAKALEAMGK 628          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BARBK (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=dxs PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.946e-27
Identity = 66/142 (46.48%), Postives = 87/142 (61.27%), Query Frame = -2
Query:  170 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG-RTREAL 592
            EIGKG+V  EG  VAL+ +G  +   L A   L+  GI  TVADARF KPLD  L+R L + H   IT+EEG++GGFG+HV  F+A + LL+ G+K R + LPD Y+ H SP + L+  GL    I     + LG  TR+ L
Sbjct:  495 EIGKGRVLREGSRVALVCFGTQLSEVLVAADELAAEGISTTVADARFAKPLDKDLMRRLAREHEVFITIEEGAIGGFGAHVLQFLAQEALLEHGLKVRTLRLPDEYLNHGSPEKILSRVGLDAKGIINAVFTSLGYETRKTL 636          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BARQU (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella quintana GN=dxs PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.731e-27
Identity = 63/136 (46.32%), Postives = 83/136 (61.03%), Query Frame = -2
Query:  185 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 592
            EIGKG+V  EG  VAL+ +G  +   L A   L   G+  TVADARF KPLD  L+R L   H  L+ VEEG++GGFG+H+  F+A +GLL+ G+K R +  PD Y+ H SP + L+  GL    I  T  + LGR
Sbjct:  495 EIGKGRVLREGSRVALVCFGTRMSEVLVAADALIAEGLSTTVADARFAKPLDKDLMRRLACEHEVLVAVEEGAIGGFGAHLLQFLAKEGLLEHGLKVRTLKFPDEYLNHGSPEKVLSRIGLDAVGIVNTVFTALGR 630          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_XANP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=dxs PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.148e-26
Identity = 72/146 (49.32%), Postives = 89/146 (60.96%), Query Frame = -2
Query:  164 IGKGKVFVEGK---DVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSG-VKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTREALLL 589
            IGKG++ V G    D+ALL  G  +  CL A   L   G  VTVADARF KPLD +LV +L   H  L+TVEEGS+GGFGSHV   +  +GLLD G VK R +VLPD YI+  +  +QLA AGL    I A    LLG+ +  + L
Sbjct:  495 IGKGRI-VHGTGEGDIALLSLGTRLAACLDAAERLEAAGFTVTVADARFAKPLDRELVLKLAAGHGALVTVEEGSVGGFGSHVLQLVTDEGLLDRGAVKVRAMVLPDIYIDQETQARQLAAAGLDADAIVAKVEGLLGKAKAGVSL 639          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_CAUSK (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter sp. (strain K31) GN=dxs PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.148e-26
Identity = 63/135 (46.67%), Postives = 83/135 (61.48%), Query Frame = -2
Query:  188 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 592
            EIGKG++  EG  VA++  G  +  CLKA  LL+  G+  TVADARF KPLD+ ++  L + H  +ITVEEG++GGFG+ V   +A  G LD G+K R +VLPD + +   P    A AGL    I   ALS LG
Sbjct:  493 EIGKGRIVREGTSVAIVSLGTRLAECLKAADLLAARGLSATVADARFAKPLDVDMLLRLAREHEAIITVEEGAMGGFGAFVLQALATHGALDRGLKIRTLVLPDVFQDQDKPDLMYAQAGLDAEGILRGALSALG 627          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS2_JANSC (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Jannaschia sp. (strain CCS1) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.148e-26
Identity = 64/135 (47.41%), Postives = 83/135 (61.48%), Query Frame = -2
Query:  188 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 592
            EIGKG+V  +G DVA+L +GA ++    A   L   G+ VTVADARF KPLD  L+ +L   H+ LITVE+G++ GFG  V H +A  G LD     R + LPD +I+ ASP +  A AGLT   IA  AL  +G
Sbjct:  494 EIGKGRVIQDGHDVAILSFGAHLEEAKDAATALEARGLSVTVADARFAKPLDTTLIDDLMTKHSALITVEQGAVLGFGGLVLHHLAATGQLDGRCAVRTLHLPDRFIDQASPAEMYADAGLTADDIAQAALEAMG 628          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_NOVAD (1-deoxy-D-xylulose-5-phosphate synthase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=dxs PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.499e-26
Identity = 61/134 (45.52%), Postives = 82/134 (61.19%), Query Frame = -2
Query:  191 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 592
            EIGKG++  +G  VALL  G  +   LKA   L   G+  TVAD RF KPLD+ L+R+L   H  ++TVEEGS+GG G+HV    + +GL+D G+K R + LPD + +H +P +Q   AGL   HI  T L  L
Sbjct:  495 EIGKGRIIRQGSKVALLSLGTRLAEALKAADQLDARGLSTTVADLRFAKPLDVALIRQLMTTHDVIVTVEEGSIGGLGAHVLTMASDEGLVDGGLKIRTMRLPDLFQDHDAPEKQYDEAGLNAPHIVDTVLKAL 628          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS2_RHOS4 (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.958e-26
Identity = 62/135 (45.93%), Postives = 83/135 (61.48%), Query Frame = -2
Query:  188 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 592
            +IG+G+V  EG  +ALL +G  +     A   L+  GI  TVADARF KPLD  L+ +L  +H  LIT+EEG++GGFGSHV+  +A  G+ D G ++R +VLPD +I+H S     A AGL    I   AL  LG
Sbjct:  495 QIGRGRVVSEGTRIALLSFGTRLAEVQVAAEALAARGISPTVADARFAKPLDRDLILQLAAHHEALITIEEGAIGGFGSHVAQLLAEAGVFDRGFRYRSMVLPDTFIDHNSAEVMYATAGLNAADIERKALETLG 629          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PHEZH (1-deoxy-D-xylulose-5-phosphate synthase OS=Phenylobacterium zucineum (strain HLK1) GN=dxs PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.698e-26
Identity = 62/135 (45.93%), Postives = 82/135 (60.74%), Query Frame = -2
Query:  188 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 592
            EIG+G++  EG  VA+L +G  +   LKA  +L+  G+  TVADARF KPLD+ L+  L + H  LITVEEG++GGFG  V H +A  G LD G+K R + LPD + +   P    A AGL    I   AL+ LG
Sbjct:  493 EIGRGRIVREGTAVAILSFGTRLGESLKAADMLAARGLSATVADARFAKPLDVDLLLRLAREHEALITVEEGAVGGFGGFVLHALAEHGALDRGLKIRTLTLPDIFQDQDKPEAMYAQAGLDAEGIVRAALAALG 627          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SPHWW (1-deoxy-D-xylulose-5-phosphate synthase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=dxs PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.442e-26
Identity = 62/140 (44.29%), Postives = 84/140 (60.00%), Query Frame = -2
Query:  170 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTREAL 589
            IGKG++  EGK VALL  G  +   L+A   L  LG+  TVAD RF KPLD  +++ L  +H   +T+EEG++GG G+HV    +  GL+D G+K R + LPD + EH  P +Q A AGL    I AT L+ L R  + L
Sbjct:  496 IGKGRIVREGKTVALLSLGTRLGEALRAADQLDALGLSTTVADLRFAKPLDEAMIQTLLTSHEVAVTIEEGAIGGLGAHVLTLASDLGLIDGGLKLRTMRLPDAFQEHDKPEKQYAEAGLDAESIVATVLAALHRNSKGL 635          
The following BLAST results are available for this feature:
BLAST of DT214510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
DXS_MARMM3.946e-2745.591-deoxy-D-xylulose-5-phosphate synthase OS=Maricau... [more]
DXS_BARBK3.946e-2746.481-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_BARQU6.731e-2746.321-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_XANP21.148e-2649.321-deoxy-D-xylulose-5-phosphate synthase OS=Xanthob... [more]
DXS_CAUSK1.148e-2646.671-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]
DXS2_JANSC1.148e-2647.411-deoxy-D-xylulose-5-phosphate synthase 2 OS=Janna... [more]
DXS_NOVAD1.499e-2645.521-deoxy-D-xylulose-5-phosphate synthase OS=Novosph... [more]
DXS2_RHOS41.958e-2645.931-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodo... [more]
DXS_PHEZH5.698e-2645.931-deoxy-D-xylulose-5-phosphate synthase OS=Phenylo... [more]
DXS_SPHWW7.442e-2644.291-deoxy-D-xylulose-5-phosphate synthase OS=Sphingo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_21F06_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-21F06-K11-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214510 ID=DT214510; Name=DT214510; organism=Citrus sinensis; type=EST; length=722bp
TTAATTTACAATGACGTACCCAACATTAAGAAAAACAGTTGATCTATATT
TGGTTCTTGCCCTCTCTTATGTTTTTGTTGTTCCCTCATCCTTTCTAATA
AGTGAATTTACCAATCTGGGAAACTCAAATGCCAAAAAGAAAACTCGGGG
GTTTCTAGCACATTAAAAGGAGGGCTTCACGGGTGCGCCCGAGCAAACTT
AATGCTGTAGCAGCAATGTGATGTCCAGTGAGTCCCGCAAGAGCAAGCTG
TTGGGTTGGTGATGCATGTTCAATATAGTTGTCTGGTAAAACAATTGGTC
TCCACTTAACTCCTGAATCAAGCAGTCCGTCAAGGGCAATGAAGTGTGAA
ACATGTGAACCAAATCCTCCAAGGGAGCCTTCCTCAACTGTTATCAAAAA
TGTATGGTTTTGACAAAGCTCCCTGACCAGCTTAATATCTAGGGGCTTGC
AAAATCTTGCATCAGCCACAGTAACATCAATGCCAAGCTTTGAAAGAAGG
GCCCGAGCTTTCAGGCAGTTCTGAACCATTGCCCCATATCCAAGCAAAGC
AACATCTTTGCCCTCTACAAAAACTTTCCCTTTTCCAATCTCCTCAAATC
AAATTCAAGCAAAGTTTGAAAATGACTAATGAAGAATAATAAAAAAGCAA
AATGGAATATGCAAGTAAGTCATAAAATTGATAAAAATAACTTAATATTT
TGGACAATGTTTACCTTAACCC
back to top