DT214510

Overview
NameDT214510
Unique NameDT214510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_ERYLH (1-deoxy-D-xylulose-5-phosphate synthase OS=Erythrobacter litoralis (strain HTCC2594) GN=dxs PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.269e-25
Identity = 58/134 (43.28%), Postives = 83/134 (61.94%), Query Frame = -2
Query:  191 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 592
            EIGKG++   G  VALL  G  ++   +A   L   G+  T+AD RF KPLD +L+ +L +NH  ++T+EE S+GG G+HV  + + +GL D+G+K R + LPD +IE  +P +Q   AGLT  HI  T L  L
Sbjct:  495 EIGKGRIVKHGSKVALLSLGTRLEEAKRAADELEAKGLSTTIADMRFAKPLDTELIAQLMKNHEVVVTIEEASIGGLGAHVLTYASDEGLTDAGLKIRTMRLPDAFIEQDAPEKQYDEAGLTAPHIVDTVLKAL 628          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_CAUCR (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter crescentus GN=dxs PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.828e-25
Identity = 61/135 (45.19%), Postives = 81/135 (60.00%), Query Frame = -2
Query:  188 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 592
            EIGKG++  EG  VA++ +G  +   LKA  LL+  G+  TV DARF KPLD+ L+  L + H  +ITVEEGS+GGFG+ V   +A  G LD G+K R + LPD + +   P    A AGL    I   ALS +G
Sbjct:  493 EIGKGRIVREGTSVAIVSFGTRLSESLKAADLLAARGLSATVCDARFAKPLDLDLLLRLAREHEAIITVEEGSMGGFGAFVLQALAQHGALDRGLKIRTLCLPDVFQDQDKPDAMYAQAGLDAEGILRGALSAMG 627          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_CAUCN (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=dxs PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.828e-25
Identity = 61/135 (45.19%), Postives = 81/135 (60.00%), Query Frame = -2
Query:  188 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 592
            EIGKG++  EG  VA++ +G  +   LKA  LL+  G+  TV DARF KPLD+ L+  L + H  +ITVEEGS+GGFG+ V   +A  G LD G+K R + LPD + +   P    A AGL    I   ALS +G
Sbjct:  493 EIGKGRIVREGTSVAIVSFGTRLSESLKAADLLAARGLSATVCDARFAKPLDLDLLLRLAREHEAIITVEEGSMGGFGAFVLQALAQHGALDRGLKIRTLCLPDVFQDQDKPDAMYAQAGLDAEGILRGALSAMG 627          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS1_ROSDO (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.693e-25
Identity = 62/144 (43.06%), Postives = 88/144 (61.11%), Query Frame = -2
Query:  164 EIGKGKVFVEGK-DVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTREALLL 592
            EIGKG++  EG  +VA+L  G ++ +C  A  +L   GI+ T+ADARF KPLD+ L+  L Q H  LITVE+G++ GFG+ V   +A +GLLD G K R + LPD +I+ A+P +    AGL    I      +LGR  + + L
Sbjct:  497 EIGKGRMIREGDGEVAILSLGTLLSDCEAAARILEAEGINATIADARFAKPLDMALIANLVQTHKALITVEQGAMAGFGAMVLQSMAAEGLLDLGCKVRTMCLPDRFIDQAAPAEMYRDAGLDTMGIVEQVTRVLGRDLKVVTL 640          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_GLUOX (1-deoxy-D-xylulose-5-phosphate synthase OS=Gluconobacter oxydans GN=dxs PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 65/142 (45.77%), Postives = 84/142 (59.15%), Query Frame = -2
Query:  188 EIGKGKVFVEGK-------DVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 592
            EIGKG++  E +        VA+L  G  +   L+A   L+  G+ VTVADARF KP+D  LV +L + H   IT+EEG++GGF S V   +A  GLLD  VK+RP+ LPD YI+H +   Q   AGLT  HI  TA   LG
Sbjct:  512 EIGKGRIVREARRAPNARGGVAILSLGPRMHESLRAADQLAAQGVPVTVADARFAKPIDKALVEDLARQHEVFITIEEGAIGGFSSLVVQHLAETGLLDK-VKFRPMALPDRYIDHNTQDAQYEDAGLTAPHIVRTAADALG 652          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SPHAL (1-deoxy-D-xylulose-5-phosphate synthase OS=Sphingopyxis alaskensis GN=dxs PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.896e-23
Identity = 58/134 (43.28%), Postives = 76/134 (56.72%), Query Frame = -2
Query:  191 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 592
            EIGKG+V  EGK VA+L  G  +   LKA   L   G+  +V D RF KPLD +L+R     H   +TVEEGS+GG G+HV    + +GL+D+G+K R + LPD + +   P  Q   AGL    I  T L  L
Sbjct:  495 EIGKGRVVREGKTVAILSLGTRLAEALKAADTLEARGLSTSVIDLRFAKPLDEELIRRTLAAHEVCVTVEEGSIGGLGAHVLTLASDEGLIDAGLKLRTLRLPDMFQDQDKPELQYDAAGLNAPQIVDTVLKAL 628          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS1_ZYMMO (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Zymomonas mobilis GN=dxs1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.241e-22
Identity = 57/135 (42.22%), Postives = 79/135 (58.52%), Query Frame = -2
Query:  185 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 589
            IGKG++   GK VA+L  G  ++  LKA   L   G+  +VAD RF KPLD  L R+L ++H  +IT+EEG+LGGF + V    + +GL+D G+K R + LPD +       +Q A AGL    I A  +S L R
Sbjct:  496 IGKGRLIRRGKKVAILSLGTRLEESLKAADRLDAQGLSTSVADMRFAKPLDEALTRQLLKSHQVIITIEEGALGGFATQVLTMASDEGLMDDGLKIRTLRLPDRFQPQDKQERQYAEAGLDADGIVAAVISALHR 630          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS2_ZYMMO (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Zymomonas mobilis GN=dxs2 PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.112e-21
Identity = 56/135 (41.48%), Postives = 78/135 (57.78%), Query Frame = -2
Query:  185 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 589
            IGKG++   GK VA+L  G  ++  LKA   L   G+  +VAD RF KPLD  L R+L ++H  +IT+EEG+LGGF + V    + +GL+D G+K R + LPD +       +Q A AGL    I A   + L R
Sbjct:  496 IGKGRLIRRGKKVAILSLGTRLEESLKAADRLDAQGLSTSVADMRFAKPLDEALTRQLLKSHQVIITIEEGALGGFATQVLTMASDEGLMDDGLKIRTLRLPDRFQPQDKQERQYAEAGLDADGIVAAVTAALQR 630          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_ANAVT (1-deoxy-D-xylulose-5-phosphate synthase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dxs PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.041e-19
Identity = 58/134 (43.28%), Postives = 82/134 (61.19%), Query Frame = -2
Query:  200 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSG--VKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATAL 592
            EIGKG++   G DV ++GYG MV   ++A  +LS+ GI+ TV +ARF KPLD +L+  L Q    ++T+EEG  +GGFGS V+     + LLD+   V  + I +PD  +EHA+P +  A  GLT   IA   L
Sbjct:  495 EIGKGEILRNGDDVLIIGYGTMVYPSMQAAEILSEHGIEATVINARFVKPLDTELIVPLAQKIGRVVTLEEGCVMGGFGSAVA-----EALLDADVVVPVKRIGIPDVLVEHATPDESKAELGLTSRQIAERVL 623          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_ANASP (1-deoxy-D-xylulose-5-phosphate synthase OS=Anabaena sp. (strain PCC 7120) GN=dxs PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.041e-19
Identity = 58/134 (43.28%), Postives = 82/134 (61.19%), Query Frame = -2
Query:  200 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSG--VKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATAL 592
            EIGKG++   G DV ++GYG MV   ++A  +LS+ GI+ TV +ARF KPLD +L+  L Q    ++T+EEG  +GGFGS V+     + LLD+   V  + I +PD  +EHA+P +  A  GLT   IA   L
Sbjct:  495 EIGKGEILRNGDDVLIIGYGTMVYPSMQAAEILSEHGIEATVINARFVKPLDTELIVPLAQKIGRVVTLEEGCVMGGFGSAVA-----EALLDADVVVPVKRIGIPDVLVEHATPDESKAELGLTSRQIAERVL 623          
The following BLAST results are available for this feature:
BLAST of DT214510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
DXS_ERYLH1.269e-2543.281-deoxy-D-xylulose-5-phosphate synthase OS=Erythro... [more]
DXS_CAUCR2.828e-2545.191-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]
DXS_CAUCN2.828e-2545.191-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]
DXS1_ROSDO3.693e-2543.061-deoxy-D-xylulose-5-phosphate synthase 1 OS=Roseo... [more]
DXS_GLUOX8.228e-2545.771-deoxy-D-xylulose-5-phosphate synthase OS=Glucono... [more]
DXS_SPHAL5.896e-2343.281-deoxy-D-xylulose-5-phosphate synthase OS=Sphingo... [more]
DXS1_ZYMMO2.241e-2242.221-deoxy-D-xylulose-5-phosphate synthase 1 OS=Zymom... [more]
DXS2_ZYMMO1.112e-2141.481-deoxy-D-xylulose-5-phosphate synthase 2 OS=Zymom... [more]
DXS_ANAVT1.041e-1943.281-deoxy-D-xylulose-5-phosphate synthase OS=Anabaen... [more]
DXS_ANASP1.041e-1943.281-deoxy-D-xylulose-5-phosphate synthase OS=Anabaen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_21F06_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-21F06-K11-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214510 ID=DT214510; Name=DT214510; organism=Citrus sinensis; type=EST; length=722bp
TTAATTTACAATGACGTACCCAACATTAAGAAAAACAGTTGATCTATATT
TGGTTCTTGCCCTCTCTTATGTTTTTGTTGTTCCCTCATCCTTTCTAATA
AGTGAATTTACCAATCTGGGAAACTCAAATGCCAAAAAGAAAACTCGGGG
GTTTCTAGCACATTAAAAGGAGGGCTTCACGGGTGCGCCCGAGCAAACTT
AATGCTGTAGCAGCAATGTGATGTCCAGTGAGTCCCGCAAGAGCAAGCTG
TTGGGTTGGTGATGCATGTTCAATATAGTTGTCTGGTAAAACAATTGGTC
TCCACTTAACTCCTGAATCAAGCAGTCCGTCAAGGGCAATGAAGTGTGAA
ACATGTGAACCAAATCCTCCAAGGGAGCCTTCCTCAACTGTTATCAAAAA
TGTATGGTTTTGACAAAGCTCCCTGACCAGCTTAATATCTAGGGGCTTGC
AAAATCTTGCATCAGCCACAGTAACATCAATGCCAAGCTTTGAAAGAAGG
GCCCGAGCTTTCAGGCAGTTCTGAACCATTGCCCCATATCCAAGCAAAGC
AACATCTTTGCCCTCTACAAAAACTTTCCCTTTTCCAATCTCCTCAAATC
AAATTCAAGCAAAGTTTGAAAATGACTAATGAAGAATAATAAAAAAGCAA
AATGGAATATGCAAGTAAGTCATAAAATTGATAAAAATAACTTAATATTT
TGGACAATGTTTACCTTAACCC
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