DT214506

Overview
NameDT214506
Unique NameDT214506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4323 contig Csv1_Contig4323:43..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: WDS_DROME (Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.358e-13
Identity = 39/121 (32.23%), Postives = 67/121 (55.37%), Query Frame = -2
Query:  162 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 524
            GH+  I  +A S D R + SG +D T+ +W+L++G+ +  L GH++ V+   ++ + +L+ SGS D +V++WDV T                + LKTLP  S PV ++ F+R   L  + +
Sbjct:  112 GHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG---------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSS 217          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: KTNB1_XENLA (Katanin p80 WD40-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.358e-13
Identity = 43/130 (33.08%), Postives = 63/130 (48.46%), Query Frame = -2
Query:  150 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 539
            +R  +GH++ + SL   P G ++ASG  D  I +WD+    CV    GHT  V  L +S +G  LAS S D +VKLWD+T    + +  E  G               PV  ++F     L A+G+  +T
Sbjct:   98 LRTLMGHKANVSSLDFHPYGEFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAELSEHKG---------------PVNIIEFHPNEYLLASGSADRT 212          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: KTNB1_MOUSE (Katanin p80 WD40-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.358e-13
Identity = 42/130 (32.31%), Postives = 64/130 (49.23%), Query Frame = -2
Query:  150 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 539
            +R  +GH++ I SL   P G ++ASG +D  I +WD+    CV    GH+  V  L +S +G  LAS + D TVKLWD+T                 + +   P  + PV  ++F     L A+G+  +T
Sbjct:   98 LRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAG---------------KMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRT 212          

HSP 2 Score: 67.3958 bits (163), Expect = 4.918e-11
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = -2
Query:  252 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNR 524
            GH   +  L  SPDG+++AS  +D T+ +WDL +G+ ++   GHT  V  + +     LLASGS+D T++ WD+     V   E + G  R
Sbjct:  145 GHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVR 235          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: KTNB1_HUMAN (Katanin p80 WD40-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.358e-13
Identity = 42/130 (32.31%), Postives = 64/130 (49.23%), Query Frame = -2
Query:  150 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 539
            +R  +GH++ I SL   P G ++ASG +D  I +WD+    CV    GH+  V  L +S +G  LAS + D TVKLWD+T                 + +   P  + PV  ++F     L A+G+  +T
Sbjct:   98 LRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAG---------------KMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRT 212          

HSP 2 Score: 67.3958 bits (163), Expect = 4.918e-11
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = -2
Query:  252 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNR 524
            GH   +  L  SPDG+++AS  +D T+ +WDL +G+ ++   GHT  V  + +     LLASGS+D T++ WD+     V   E + G  R
Sbjct:  145 GHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVR 235          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: KTNB1_XENTR (Katanin p80 WD40-containing subunit B1 OS=Xenopus tropicalis GN=katnb1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.080e-13
Identity = 43/130 (33.08%), Postives = 63/130 (48.46%), Query Frame = -2
Query:  150 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 539
            +R  +GH++ + SL   P G ++ASG  D  I +WD+    CV    GHT  V  L +S +G  LAS S D +VKLWD+T    + +  E  G               PV  ++F     L A+G+  +T
Sbjct:   98 LRTLMGHKANVCSLDFHPYGDFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAELSEHKG---------------PVNIIEFHPNEYLLASGSADRT 212          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: WDR38_HUMAN (WD repeat-containing protein 38 OS=Homo sapiens GN=WDR38 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.862e-13
Identity = 39/94 (41.49%), Postives = 55/94 (58.51%), Query Frame = -2
Query:  264 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS--TKVLKTEEKS 539
            V+ F  H   + S A SPDG+ + +G EDG +  W+  SG+ +  L GHT  V    +S +G L AS S DCTV+LWDV  +   +VLK  ++S
Sbjct:   14 VKFFGQHGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLFASASCDCTVRLWDVARAKCLRVLKGHQRS 107          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: TUP11_SCHPO (Transcriptional repressor tup11 OS=Schizosaccharomyces pombe GN=tup11 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.862e-13
Identity = 42/145 (28.97%), Postives = 69/145 (47.59%), Query Frame = -2
Query:  150 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRL-------------------------RSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 509
            + ++A SPDG+Y+ +G ED  I +WDL++ +      GH   +++L +S  G  + SGS D T +LWDV T   +LK E ++G   +                           ++ L      VYS+ FS  + +  +G+L KT
Sbjct:  363 VRTIAFSPDGKYLVTGTEDRQIKLWDLSTQKVRYVFSGHEQDIYSLDFSHNGRFIVSGSGDRTARLWDVETGQCILKLEIENGVTAIAISPNDQFIAVGSLDQIIRVWSVSGTLVERLEGHKESVYSIAFSPDSSILLSGSLDKT 507          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: MUT11_CHLRE (Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut11 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.962e-13
Identity = 43/117 (36.75%), Postives = 63/117 (53.85%), Query Frame = -2
Query:  192 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY-SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFS 539
            V    GH   +  +A +P+GRY+A+  +D ++ +WD  +G C+  L GHT+ V+   +    G LLASGS D T++LWDV           +SG    R L+ +P  S PV S  FS
Sbjct:   75 VNTLAGHSCGVSDVAWNPNGRYLATAADDHSLKLWDAETGACLRTLTGHTNYVFCCNFDGAAGHLLASGSFDETLRLWDV-----------RSG----RCLREVPAHSDPVTSAAFS 176          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: WDR5B_PONAB (WD repeat-containing protein 5B OS=Pongo abelii PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.529e-12
Identity = 40/125 (32.00%), Postives = 63/125 (50.40%), Query Frame = -2
Query:  162 RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 536
            R   GH   I  +A S D   + S  +D T+ +WD+ SG+C+  L GH++ V+   ++   +L+ SGS D TVK+W+V T                + LKTL   S PV ++ F+    L  +G+
Sbjct:   77 RTLYGHNLEISDVAWSSDSSRLVSASDDKTLKLWDMRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDETVKIWEVKTG---------------KCLKTLSAHSDPVSAVHFNCSGSLIVSGS 186          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: TUP1_KLULA (General transcriptional corepressor TUP1 OS=Kluyveromyces lactis GN=TUP1 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.529e-12
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = -2
Query:  261 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG 509
            I S+  SPDG+++A+G ED  I +WDL + + V  L GH   +++L Y   G+ L SGS D TV++WD+TT T  L    + G
Sbjct:  409 IRSVCFSPDGKFLATGAEDKLIRIWDLETKKIVMTLKGHEQDIYSLDYFPSGNKLVSGSGDRTVRIWDLTTGTCSLTLSIEDG 491          
The following BLAST results are available for this feature:
BLAST of DT214506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
WDS_DROME2.358e-1332.23Protein will die slowly OS=Drosophila melanogaster... [more]
KTNB1_XENLA2.358e-1333.08Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]
KTNB1_MOUSE2.358e-1332.31Katanin p80 WD40-containing subunit B1 OS=Mus musc... [more]
KTNB1_HUMAN2.358e-1332.31Katanin p80 WD40-containing subunit B1 OS=Homo sap... [more]
KTNB1_XENTR3.080e-1333.08Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]
WDR38_HUMAN6.862e-1341.49WD repeat-containing protein 38 OS=Homo sapiens GN... [more]
TUP11_SCHPO6.862e-1328.97Transcriptional repressor tup11 OS=Schizosaccharom... [more]
MUT11_CHLRE8.962e-1336.75Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut1... [more]
WDR5B_PONAB1.529e-1232.00WD repeat-containing protein 5B OS=Pongo abelii PE... [more]
TUP1_KLULA1.529e-1242.17General transcriptional corepressor TUP1 OS=Kluyve... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_16C03_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-16C03-F6-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214506 ID=DT214506; Name=DT214506; organism=Citrus sinensis; type=EST; length=540bp
TTTCTCGTTTCTTAATACGTGTTACAATATAGAACACAGAAAGTTATCAA
GCCCAATCGTTGACAAAGGATTCTGATTTTACATCCAAGACTTTGCCTGC
ACTGCTGTTGTTGAACTCGCCCATCCCGCTCAGCATAAATCTTCTATGAA
GTTTTTGAGAGAGCCCCCGCAGCAAATAGGAGATTTCTTCGAGAAAACTG
TAAAGAATAGACTGGCGTCGACTTGGTTGGCAGAGTTTTCAACGATCTCA
GTCTGTTTGTTCCACTCTTCTCTTCGGTTTTCAGCACCTTCGTGCTAGTA
GTGACATCCCATAATTTTACGGTGCAATCAGCAGATCCAGATGCGAGAAG
CGAACCTTCACAACTGTAGGCTAGTGTCCACACGCATGAGGTGTGACCCA
TCAAAGGGGTGACACAACGACCACTAGCAAGATCCCACATCATGATCGTG
CCATCTTCATCACCAGATGCCATGTACCGACCATCGGGTGACATTGCTAA
TGACAAAATCATACTCCTATGTCCAATAAAAATCCGGACA
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