DT214506

Overview
NameDT214506
Unique NameDT214506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4323 contig Csv1_Contig4323:43..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: NLE1_BOVIN (Notchless protein homolog 1 OS=Bos taurus GN=NLE1 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.529e-12
Identity = 41/124 (33.06%), Postives = 66/124 (53.23%), Query Frame = -2
Query:  153 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 524
            GH+++I  +  SPD R +AS   D +I +WD  +G+ +  L GH + V+ +A+S +  LL SGS+D T+K+WDV    + L T+             LP  +  VY++ +S      A+G   K
Sbjct:  370 GHQALINQVVFSPDSRVIASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDV--KAQKLSTD-------------LPGHADEVYAVDWSPDGQRVASGGKDK 478          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: Y1491_SYNY3 (Uncharacterized WD repeat-containing protein sll1491 OS=Synechocystis sp. (strain PCC 6803) GN=sll1491 PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.997e-12
Identity = 33/70 (47.14%), Postives = 55/70 (78.57%), Query Frame = -2
Query:  300 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 509
            I ++A+SP+ R++A+ +++GTIM++DLA+G+ VT L GH   V +LA+S +G+ L SG+ D TVK+WD++
Sbjct:  275 INTIAVSPNNRWVATANKEGTIMIFDLANGKQVTTLRGHQGWVLSLAFSPDGNTLYSGAEDKTVKIWDLS 344          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: NLE1_MOUSE (Notchless protein homolog 1 OS=Mus musculus GN=Nle1 PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 1.997e-12
Identity = 41/124 (33.06%), Postives = 66/124 (53.23%), Query Frame = -2
Query:  153 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 524
            GH+++I  +  SPD R +AS   D +I +WD  +G+ +  L GH + V+ +A+S +  LL SGS+D T+K+WDV          +K  T+       LP  +  VY++ +S      A+G   K
Sbjct:  370 GHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKA--------QKLATD-------LPGHADEVYAVDWSPDGQRVASGGKDK 478          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: GBLP_DROME (Guanine nucleotide-binding protein subunit beta-like protein OS=Drosophila melanogaster GN=Rack1 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.997e-12
Identity = 36/105 (34.29%), Postives = 55/105 (52.38%), Query Frame = -2
Query:  210 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV 524
            GH   I  + +S DG Y  SG  D T+ +WDLA+G+      GHT  V ++A+S +   + SGS D T+KLW+     K    +E   T+ +  ++  P  S P+
Sbjct:   62 GHSHFISDVVLSSDGNYALSGSWDQTLRLWDLAAGKTTRRFEGHTKDVLSVAFSADNRQIVSGSRDKTIKLWNTLAECK-FTIQEDGHTDWVSCVRFSPNHSNPI 165          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: TUP12_SCHPO (Transcriptional repressor tup12 OS=Schizosaccharomyces pombe GN=tup12 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.406e-12
Identity = 43/119 (36.13%), Postives = 59/119 (49.58%), Query Frame = -2
Query:  153 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 509
            + S+A SPDG+Y+A+G ED  I +WD+A  R    L GH   +++L +S +G  L SGS D TV LWDV    + L      G                V ++ FS      AAG+L K
Sbjct:  337 VRSVAFSPDGKYLATGVEDQQIRIWDIAQKRVYRLLTGHEQEIYSLDFSKDGKTLVSGSGDRTVCLWDVEAGEQKLILHTDDG----------------VTTVMFSPDGQFIAAGSLDK 439          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: NLE1_PONAB (Notchless protein homolog 1 OS=Pongo abelii GN=NLE1 PE=2 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 3.406e-12
Identity = 39/124 (31.45%), Postives = 63/124 (50.81%), Query Frame = -2
Query:  153 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 524
            GH+++I  +  SPD R +AS   D +I +WD  +G+ +  L GH + V+ +A+S +  LL SGS+D T+K+WDV      +                LP  +  VY++ +S      A+G   K
Sbjct:  370 GHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAM---------------DLPGHADEVYAVDWSPDGQRVASGGKDK 478          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: NLE1_HUMAN (Notchless protein homolog 1 OS=Homo sapiens GN=NLE1 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 3.406e-12
Identity = 39/124 (31.45%), Postives = 63/124 (50.81%), Query Frame = -2
Query:  153 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK 524
            GH+++I  +  SPD R +AS   D +I +WD  +G+ +  L GH + V+ +A+S +  LL SGS+D T+K+WDV      +                LP  +  VY++ +S      A+G   K
Sbjct:  370 GHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAM---------------DLPGHADEVYAVDWSPDGQRVASGGKDK 478          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: WDR5B_HUMAN (WD repeat-containing protein 5B OS=Homo sapiens GN=WDR5B PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.448e-12
Identity = 39/121 (32.23%), Postives = 62/121 (51.24%), Query Frame = -2
Query:  162 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 524
            GH   I  +A S D   + S  +D T+ +WD+ SG+C+  L GH++ V+   ++   +L+ SGS D TVK+W+V T                + LKTL   S PV ++ F+    L  +G+
Sbjct:   81 GHNLEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDETVKIWEVKTG---------------KCLKTLSAHSDPVSAVHFNCSGSLIVSGS 186          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: YCW2_YEAST (WD repeat-containing protein YCR072C OS=Saccharomyces cerevisiae GN=YCR072C PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 5.809e-12
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = -2
Query:  297 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 524
            GH+ ++  +A SPDGRY+ S   D +I +WD   G+ ++   GH + V+ +A+S +  LL S S D T+K+WDV T
Sbjct:  400 GHQKLVNHVAFSPDGRYIVSASFDNSIKLWDGRDGKFISTFRGHVASVYQVAWSSDCRLLVSCSKDTTLKVWDVRT 475          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: TUP1_DICDI (General transcriptional corepressor tupA OS=Dictyostelium discoideum GN=tupA PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.809e-12
Identity = 32/78 (41.03%), Postives = 52/78 (66.67%), Query Frame = -2
Query:  294 IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 527
            +G ++ + S+AMSPDGR +A+G  D  + +WD  +G  +    GH   V+++A+S +G  LASGS D ++KLWD++ S
Sbjct:  412 VGPKNGVTSVAMSPDGRLVAAGSLDNIVRLWDAQTGYFLERYEGHLDSVYSVAFSPDGKSLASGSLDKSLKLWDLSGS 489          
The following BLAST results are available for this feature:
BLAST of DT214506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
NLE1_BOVIN1.529e-1233.06Notchless protein homolog 1 OS=Bos taurus GN=NLE1 ... [more]
Y1491_SYNY31.997e-1247.14Uncharacterized WD repeat-containing protein sll14... [more]
NLE1_MOUSE1.997e-1233.06Notchless protein homolog 1 OS=Mus musculus GN=Nle... [more]
GBLP_DROME1.997e-1234.29Guanine nucleotide-binding protein subunit beta-li... [more]
TUP12_SCHPO3.406e-1236.13Transcriptional repressor tup12 OS=Schizosaccharom... [more]
NLE1_PONAB3.406e-1231.45Notchless protein homolog 1 OS=Pongo abelii GN=NLE... [more]
NLE1_HUMAN3.406e-1231.45Notchless protein homolog 1 OS=Homo sapiens GN=NLE... [more]
WDR5B_HUMAN4.448e-1232.23WD repeat-containing protein 5B OS=Homo sapiens GN... [more]
YCW2_YEAST5.809e-1240.79WD repeat-containing protein YCR072C OS=Saccharomy... [more]
TUP1_DICDI5.809e-1241.03General transcriptional corepressor tupA OS=Dictyo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_16C03_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-16C03-F6-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214506 ID=DT214506; Name=DT214506; organism=Citrus sinensis; type=EST; length=540bp
TTTCTCGTTTCTTAATACGTGTTACAATATAGAACACAGAAAGTTATCAA
GCCCAATCGTTGACAAAGGATTCTGATTTTACATCCAAGACTTTGCCTGC
ACTGCTGTTGTTGAACTCGCCCATCCCGCTCAGCATAAATCTTCTATGAA
GTTTTTGAGAGAGCCCCCGCAGCAAATAGGAGATTTCTTCGAGAAAACTG
TAAAGAATAGACTGGCGTCGACTTGGTTGGCAGAGTTTTCAACGATCTCA
GTCTGTTTGTTCCACTCTTCTCTTCGGTTTTCAGCACCTTCGTGCTAGTA
GTGACATCCCATAATTTTACGGTGCAATCAGCAGATCCAGATGCGAGAAG
CGAACCTTCACAACTGTAGGCTAGTGTCCACACGCATGAGGTGTGACCCA
TCAAAGGGGTGACACAACGACCACTAGCAAGATCCCACATCATGATCGTG
CCATCTTCATCACCAGATGCCATGTACCGACCATCGGGTGACATTGCTAA
TGACAAAATCATACTCCTATGTCCAATAAAAATCCGGACA
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