DT214506

Overview
NameDT214506
Unique NameDT214506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4323 contig Csv1_Contig4323:43..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: RCO1_NEUCR (Transcriptional repressor rco-1 OS=Neurospora crassa GN=rco-1 PE=4 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 5.809e-12
Identity = 35/82 (42.68%), Postives = 51/82 (62.20%), Query Frame = -2
Query:  270 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT--STKVLKTEE 509
            I S+  SPDG+Y+A+G ED  I +WD+ S        GH   +++L +S +G  +ASGS D TV+LWD+ T  +T VL  E+
Sbjct:  347 IRSVCFSPDGKYLATGAEDKLIRVWDIQSRTIRNTFHGHEQDIYSLDFSRDGRTIASGSGDRTVRLWDIETGQNTSVLSIED 428          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: KTNB1_CHICK (Katanin p80 WD40-containing subunit B1 OS=Gallus gallus GN=KATNB1 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 5.809e-12
Identity = 42/130 (32.31%), Postives = 62/130 (47.69%), Query Frame = -2
Query:  150 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 539
            +R  +GH++ I SL   P G ++ASG  D  I +WD+    C+     HT  V  L +S +G  LAS + D TVKLWD+T    + +    SG               PV  ++F     L A+G+  +T
Sbjct:   98 LRTLLGHKANICSLDFHPYGSFVASGSLDTDIKLWDVRRKGCIFKYKSHTQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKVMFEFTGHSG---------------PVNVVEFHPSEYLLASGSSDRT 212          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: GBLP_DANRE (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Danio rerio GN=gnb2l1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.809e-12
Identity = 35/109 (32.11%), Postives = 57/109 (52.29%), Query Frame = -2
Query:  210 RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV 536
            R   GH   +  + +S DG++  SG  DGT+ +WDL +G      +GHT  V ++A+S +   + SGS D T+KLW+ T        ++ S T  +  ++  P  S P+
Sbjct:   57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSADNRQIVSGSRDKTIKLWN-TLGVCKYTIQDDSHTEWVSCVRFSPNSSNPI 164          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: LIS1_DROME (Lissencephaly-1 homolog OS=Drosophila melanogaster GN=Lis-1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 7.587e-12
Identity = 35/83 (42.17%), Postives = 46/83 (55.42%), Query Frame = -2
Query:  276 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 524
            GHR+ I  +   P    M S  ED TI +WD  +G     L GHT  V  +A+  +G LLAS SAD ++KLWD   S + +KT
Sbjct:  106 GHRASITRVIFHPIFALMVSASEDATIRIWDFETGEYERSLKGHTDSVQDVAFDAQGKLLASCSADLSIKLWDFQQSYECIKT 188          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: LIS1_DICDI (Lissencephaly-1 homolog OS=Dictyostelium discoideum GN=lis1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.587e-12
Identity = 36/79 (45.57%), Postives = 44/79 (55.70%), Query Frame = -2
Query:  297 IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 533
            I  GHR+ I S+   P    M S  ED TI +WD  SG     L GHT+ V  + +   G+LLAS SAD T+KLWD  T
Sbjct:  101 ILTGHRNCINSVKFHPSFSLMVSASEDATIKVWDFESGEFERTLKGHTNAVQDIDFDKTGNLLASCSADLTIKLWDFQT 179          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: WDR5_DICDI (WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 39/129 (30.23%), Postives = 62/129 (48.06%), Query Frame = -2
Query:  150 RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 536
            R   GH+  I  +A S D + + S  +D TI +WD+ SG+ V  L GH   V+ ++++ + +L+ SGS D  V++WDV T                   K +   S PV  + F+R   L  +G+   T
Sbjct:   82 RTLEGHKEGISDIAWSQDSKLICSASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNLIVSGSFDENVRIWDVNTG---------------ECTKMISAHSDPVTGVHFNRDGTLVVSGSYDGT 195          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: GBLP_RAT (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Rattus norvegicus GN=Gnb2l1 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 34/109 (31.19%), Postives = 58/109 (53.21%), Query Frame = -2
Query:  210 RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV 536
            R   GH   +  + +S DG++  SG  DGT+ +WDL +G      +GHT  V ++A+S +   + SGS D T+KLW+ T        +++S +  +  ++  P  S P+
Sbjct:   57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 164          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: GBLP_PIG (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Sus scrofa GN=GNB2L1 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 34/109 (31.19%), Postives = 58/109 (53.21%), Query Frame = -2
Query:  210 RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV 536
            R   GH   +  + +S DG++  SG  DGT+ +WDL +G      +GHT  V ++A+S +   + SGS D T+KLW+ T        +++S +  +  ++  P  S P+
Sbjct:   57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 164          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: GBLP_MOUSE (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Mus musculus GN=Gnb2l1 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 34/109 (31.19%), Postives = 58/109 (53.21%), Query Frame = -2
Query:  210 RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV 536
            R   GH   +  + +S DG++  SG  DGT+ +WDL +G      +GHT  V ++A+S +   + SGS D T+KLW+ T        +++S +  +  ++  P  S P+
Sbjct:   57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 164          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: GBLP_MACFA (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Macaca fascicularis GN=GNB2L1 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 34/109 (31.19%), Postives = 58/109 (53.21%), Query Frame = -2
Query:  210 RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV 536
            R   GH   +  + +S DG++  SG  DGT+ +WDL +G      +GHT  V ++A+S +   + SGS D T+KLW+ T        +++S +  +  ++  P  S P+
Sbjct:   57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 164          
The following BLAST results are available for this feature:
BLAST of DT214506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
RCO1_NEUCR5.809e-1242.68Transcriptional repressor rco-1 OS=Neurospora cras... [more]
KTNB1_CHICK5.809e-1232.31Katanin p80 WD40-containing subunit B1 OS=Gallus g... [more]
GBLP_DANRE5.809e-1232.11Guanine nucleotide-binding protein subunit beta-2-... [more]
LIS1_DROME7.587e-1242.17Lissencephaly-1 homolog OS=Drosophila melanogaster... [more]
LIS1_DICDI7.587e-1245.57Lissencephaly-1 homolog OS=Dictyostelium discoideu... [more]
WDR5_DICDI9.909e-1230.23WD repeat-containing protein 5 homolog OS=Dictyost... [more]
GBLP_RAT9.909e-1231.19Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_PIG9.909e-1231.19Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_MOUSE9.909e-1231.19Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_MACFA9.909e-1231.19Guanine nucleotide-binding protein subunit beta-2-... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_16C03_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-16C03-F6-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214506 ID=DT214506; Name=DT214506; organism=Citrus sinensis; type=EST; length=540bp
TTTCTCGTTTCTTAATACGTGTTACAATATAGAACACAGAAAGTTATCAA
GCCCAATCGTTGACAAAGGATTCTGATTTTACATCCAAGACTTTGCCTGC
ACTGCTGTTGTTGAACTCGCCCATCCCGCTCAGCATAAATCTTCTATGAA
GTTTTTGAGAGAGCCCCCGCAGCAAATAGGAGATTTCTTCGAGAAAACTG
TAAAGAATAGACTGGCGTCGACTTGGTTGGCAGAGTTTTCAACGATCTCA
GTCTGTTTGTTCCACTCTTCTCTTCGGTTTTCAGCACCTTCGTGCTAGTA
GTGACATCCCATAATTTTACGGTGCAATCAGCAGATCCAGATGCGAGAAG
CGAACCTTCACAACTGTAGGCTAGTGTCCACACGCATGAGGTGTGACCCA
TCAAAGGGGTGACACAACGACCACTAGCAAGATCCCACATCATGATCGTG
CCATCTTCATCACCAGATGCCATGTACCGACCATCGGGTGACATTGCTAA
TGACAAAATCATACTCCTATGTCCAATAAAAATCCGGACA
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