DT214506

Overview
NameDT214506
Unique NameDT214506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4323 contig Csv1_Contig4323:43..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: GBLP_HUMAN (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Homo sapiens GN=GNB2L1 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 34/109 (31.19%), Postives = 58/109 (53.21%), Query Frame = -2
Query:  210 RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV 536
            R   GH   +  + +S DG++  SG  DGT+ +WDL +G      +GHT  V ++A+S +   + SGS D T+KLW+ T        +++S +  +  ++  P  S P+
Sbjct:   57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 164          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: GBLP_CHICK (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Gallus gallus GN=GNB2L1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 34/109 (31.19%), Postives = 58/109 (53.21%), Query Frame = -2
Query:  210 RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV 536
            R   GH   +  + +S DG++  SG  DGT+ +WDL +G      +GHT  V ++A+S +   + SGS D T+KLW+ T        +++S +  +  ++  P  S P+
Sbjct:   57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 164          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: GBLP_BOVIN (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Bos taurus GN=GNB2L1 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 34/109 (31.19%), Postives = 58/109 (53.21%), Query Frame = -2
Query:  210 RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV 536
            R   GH   +  + +S DG++  SG  DGT+ +WDL +G      +GHT  V ++A+S +   + SGS D T+KLW+ T        +++S +  +  ++  P  S P+
Sbjct:   57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 164          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: TUP1_CANAL (Transcriptional repressor TUP1 OS=Candida albicans GN=TUP1 PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.294e-11
Identity = 46/132 (34.85%), Postives = 67/132 (50.76%), Query Frame = -2
Query:  150 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV--LKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 539
            ++I  GH   I SL   PDG  + SG  D ++ +WDL + +C   L      V T+A S +G L+A+GS D TV++WD TT   V  L +  ++G     S          VYS+ FS      A+G+L +T
Sbjct:  292 IKILRGHEQDIYSLDFFPDGDRLVSGSGDRSVRIWDLRTSQCSLTLSIEDG-VTTVAVSPDGKLIAAGSLDRTVRVWDSTTGFLVERLDSGNENGNGHEDS----------VYSVAFSNNGEQIASGSLDRT 412          

HSP 2 Score: 67.0106 bits (162), Expect = 6.423e-11
Identity = 40/120 (33.33%), Postives = 62/120 (51.67%), Query Frame = -2
Query:  150 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 509
            I S+  SPDG+ +A+G ED  I +WDL++ R +  L GH   +++L +  +G  L SGS D +V++WD+ TS   L    + G                V ++  S    L AAG+L +T
Sbjct:  260 IRSVCFSPDGKLLATGAEDKLIRIWDLSTKRIIKILRGHEQDIYSLDFFPDGDRLVSGSGDRSVRIWDLRTSQCSLTLSIEDG----------------VTTVAVSPDGKLIAAGSLDRT 363          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: WDR5B_MOUSE (WD repeat-containing protein 5B OS=Mus musculus GN=Wdr5b PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.690e-11
Identity = 37/121 (30.58%), Postives = 61/121 (50.41%), Query Frame = -2
Query:  162 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 524
            GH   I  +A S D   + S  +D T+ +WD+ SG+C+  L GH+  V+   ++   +L+ SGS D +VK+W+V T                + LKTL   S P+ ++ F+    L  +G+
Sbjct:   79 GHSLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTG---------------KCLKTLSAHSDPISAVNFNCNGSLIVSGS 184          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: GBLP_CHLRE (Guanine nucleotide-binding protein subunit beta-like protein OS=Chlamydomonas reinhardtii GN=GBLP PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.690e-11
Identity = 32/105 (30.48%), Postives = 55/105 (52.38%), Query Frame = -2
Query:  210 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV 524
            GH   +  + +S DG++  +G  DGT+ +WDL +G      +GHT  V ++A+S +   + SGS D T+KLW+     K    E +  T  +  ++  P  + P+
Sbjct:   62 GHSHFVQDVVISSDGQFCLTGSWDGTLRLWDLNTGTTTRRFVGHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLGECKYTIGEPEGHTEWVSCVRFSPMTTNPI 166          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: UTP13_SCHPO (Probable U3 small nucleolar RNA-associated protein 13 OS=Schizosaccharomyces pombe GN=utp13 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.207e-11
Identity = 35/91 (38.46%), Postives = 44/91 (48.35%), Query Frame = -2
Query:  267 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK 539
            V+   GH   IL L     G  + S   DG + +W L+SG CV  L  H   VW LA   +GSLL SG AD  V +W   T   + K  E+
Sbjct:  542 VQTLEGHTGAILKLIYISQGTQVVSAAADGLVKVWSLSSGECVATLDNHEDRVWALASRFDGSLLVSGGADAVVSVWKDVTEEYIAKQAEE 632          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: TG125_CAEEL (WD repeat-containing protein tag-125 OS=Caenorhabditis elegans GN=tag-125 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.207e-11
Identity = 38/125 (30.40%), Postives = 64/125 (51.20%), Query Frame = -2
Query:  162 RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 536
            R   GH+  +  +A S D R + S  +D T+ ++++ + R    L GH + V+   ++ + SL+ SGS D +V++WDV T                  +KTLP  S PV ++ F+R   L A+G+
Sbjct:  123 RTLTGHKLGVNDIAWSSDSRCVVSASDDKTLKIFEIVTSRMTKTLKGHNNYVFCCNFNPQSSLVVSGSFDESVRIWDVKTG---------------MCIKTLPAHSDPVSAVSFNRDGSLIASGS 232          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: KTNB1_ARATH (Katanin p80 WD40 repeat-containing subunit B1 homolog 1 OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 2.883e-11
Identity = 38/104 (36.54%), Postives = 54/104 (51.92%), Query Frame = -2
Query:  228 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLP 539
            VR   GHRS  +S+   P G + ASG  D  + +WD+    C+    GHT  V  L ++ +G  + SG  D  VK+WD+T     L TE KS   +++SL   P
Sbjct:   94 VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGK--LLTEFKSHEGQIQSLDFHP 195          

HSP 2 Score: 67.781 bits (164), Expect = 3.765e-11
Identity = 31/81 (38.27%), Postives = 47/81 (58.02%), Query Frame = -2
Query:  297 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 539
            +  + GH   +  L  +PDGR++ SG ED  + +WDL +G+ +T    H   + +L +     LLA+GSAD TVK WD+ T
Sbjct:  136 IHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWDLET 216          
BLAST of DT214506 vs. ExPASy Swiss-Prot
Match: GBLP_ORENI (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Oreochromis niloticus GN=gnb2l1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.883e-11
Identity = 33/105 (31.43%), Postives = 56/105 (53.33%), Query Frame = -2
Query:  210 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV 524
            GH   +  + +S DG++  SG  DGT+ +WDL +G      +GHT  V ++A+S +   + SGS D T+KLW+ T        +++  T  +  ++  P  S P+
Sbjct:   61 GHSHFVSDVVISSDGQFALSGAWDGTLRLWDLTTGLTTRRFVGHTKDVLSVAFSADNRQIVSGSRDKTIKLWN-TLGVCKYTIQDEGHTEWVSCVRFSPNSSNPI 164          
The following BLAST results are available for this feature:
BLAST of DT214506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
GBLP_HUMAN9.909e-1231.19Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_CHICK9.909e-1231.19Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_BOVIN9.909e-1231.19Guanine nucleotide-binding protein subunit beta-2-... [more]
TUP1_CANAL1.294e-1134.85Transcriptional repressor TUP1 OS=Candida albicans... [more]
WDR5B_MOUSE1.690e-1130.58WD repeat-containing protein 5B OS=Mus musculus GN... [more]
GBLP_CHLRE1.690e-1130.48Guanine nucleotide-binding protein subunit beta-li... [more]
UTP13_SCHPO2.207e-1138.46Probable U3 small nucleolar RNA-associated protein... [more]
TG125_CAEEL2.207e-1130.40WD repeat-containing protein tag-125 OS=Caenorhabd... [more]
KTNB1_ARATH2.883e-1136.54Katanin p80 WD40 repeat-containing subunit B1 homo... [more]
GBLP_ORENI2.883e-1131.43Guanine nucleotide-binding protein subunit beta-2-... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_16C03_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-16C03-F6-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214506 ID=DT214506; Name=DT214506; organism=Citrus sinensis; type=EST; length=540bp
TTTCTCGTTTCTTAATACGTGTTACAATATAGAACACAGAAAGTTATCAA
GCCCAATCGTTGACAAAGGATTCTGATTTTACATCCAAGACTTTGCCTGC
ACTGCTGTTGTTGAACTCGCCCATCCCGCTCAGCATAAATCTTCTATGAA
GTTTTTGAGAGAGCCCCCGCAGCAAATAGGAGATTTCTTCGAGAAAACTG
TAAAGAATAGACTGGCGTCGACTTGGTTGGCAGAGTTTTCAACGATCTCA
GTCTGTTTGTTCCACTCTTCTCTTCGGTTTTCAGCACCTTCGTGCTAGTA
GTGACATCCCATAATTTTACGGTGCAATCAGCAGATCCAGATGCGAGAAG
CGAACCTTCACAACTGTAGGCTAGTGTCCACACGCATGAGGTGTGACCCA
TCAAAGGGGTGACACAACGACCACTAGCAAGATCCCACATCATGATCGTG
CCATCTTCATCACCAGATGCCATGTACCGACCATCGGGTGACATTGCTAA
TGACAAAATCATACTCCTATGTCCAATAAAAATCCGGACA
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