DT214504

Overview
NameDT214504
Unique NameDT214504
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12192 contig Csv1_Contig12192:190..1015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA1_HUMAN (Proteasome subunit alpha type-1 OS=Homo sapiens GN=PSMA1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.101e-17
Identity = 48/137 (35.04%), Postives = 78/137 (56.93%), Query Frame = -2
Query:  415 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNY 825
            Q+EYAMEA+    + +G+ SK   VLV  K+  S+L   +   +K+  +D+H+  ++AG+ +DA +L N  R +     + +  P+PV +LV  +    Q  TQ  G RP+GV  L AG+D + G  ++ + PS NY
Sbjct:   21 QIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANY 153          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA1_BOVIN (Proteasome subunit alpha type-1 OS=Bos taurus GN=PSMA1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.101e-17
Identity = 48/137 (35.04%), Postives = 78/137 (56.93%), Query Frame = -2
Query:  415 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNY 825
            Q+EYAMEA+    + +G+ SK   VLV  K+  S+L   +   +K+  +D+H+  ++AG+ +DA +L N  R +     + +  P+PV +LV  +    Q  TQ  G RP+GV  L AG+D + G  ++ + PS NY
Sbjct:   21 QIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANY 153          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA1_RAT (Proteasome subunit alpha type-1 OS=Rattus norvegicus GN=Psma1 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.744e-17
Identity = 48/137 (35.04%), Postives = 78/137 (56.93%), Query Frame = -2
Query:  415 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNY 825
            Q+EYAMEA+    + +G+ SK   VLV  K+  S+L   +   +K+  +D+H+  ++AG+ +DA +L N  R +     + +  P+PV +LV  +    Q  TQ  G RP+GV  L AG+D + G  ++ + PS NY
Sbjct:   21 QIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHVFQTCPSANY 153          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.275e-14
Identity = 51/186 (27.42%), Postives = 92/186 (49.46%), Query Frame = -2
Query:  238 SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVE---QLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 786
            + +GI  KDGVV   E++ +   L    +T+K++KID+H+A  +AG ++DA  L+   + +A  Y     E + +E    L  ++  + + Y       PF V  L  G D+N G ++Y  DPSG     K             +L+  Y D++  +EAV +A++ +   M+  + + + + +A V
Sbjct:   11 TTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFY-------PFIVQTLLGGVDEN-GAKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDRYSDELYVDEAVDVAIRAIKSAMERDTYSGNGILVATV 188          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA6_YEAST (Proteasome component C7-alpha OS=Saccharomyces cerevisiae GN=SCL1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.174e-14
Identity = 61/226 (26.99%), Postives = 104/226 (46.02%), Query Frame = -2
Query:  169 QVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYK----DDISREEAVQLALKVLSKTMDS--TSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLV 825
            QVEYA +A      +++ +  KD  V++ +KKV  KLL  +T    ++ I   +   V G + DA      A+ +A  + Y Y   MP + L + + +  Q YTQ   +RP GV   F   D+  G  +Y +DP+G Y G+K            + L+  +K    D I+ E   ++    ++  +D+  T  + + LE+       + K K+   S E + + LV
Sbjct:   27 QVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTT-VSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVG-----VATKDKFFTLSAENIEERLV 246          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.193e-12
Identity = 50/176 (28.41%), Postives = 86/176 (48.86%), Query Frame = -2
Query:  259 SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSD 786
            + +GI+ KDGVVL  +++ +   +  + +  K++KID+H+A A AG + D   L+   R +A+ Y     + M V+ L   L +   G   F    P+   FL  G+D+    +LY  D  G     K            SIL  +YKD+++ EE ++LA+K ++  +     + D
Sbjct:   12 TTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALATLLANIMNGAKYF----PYLAWFLVGGYDEKP--KLYSVDMVGGITEDKYATAGSGMEFAYSILDSEYKDNLTLEEGIKLAVKAINTAIKRDVFSGD 181          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBB (Proteasome subunit alpha type-1 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.035e-12
Identity = 47/141 (33.33%), Postives = 69/141 (48.94%), Query Frame = -2
Query:  421 QVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKN-----YGFQLYMSDPSG 825
            QVEYA +A+  AG   + I  KD V++  +  V  KL++  T T  +Y ++D+    + G   D   L+  AR +A  Y Y Y  PM V  L +   D  Q  TQ  G+R  G    F G ++N     +  Q+Y  DP+G
Sbjct:   21 QVEYAFKAVTYAGLLTVAIRCKDAVLVFTQHSVPDKLMRPETIT-SLYNVNDNTGVCITGRAPDGKALVQKARNEASEYKYRYGMPMLVSVLAKPWQDMAQVRTQQAGMRLMGTIMTFVGMEQNDEDGAWIPQIYCVDPAG 160          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSMB_ARCFU (Proteasome subunit beta OS=Archaeoglobus fulgidus GN=psmB PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.734e-12
Identity = 53/215 (24.65%), Postives = 94/215 (43.72%), Query Frame = -2
Query:  166 EAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWK-XXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVK 807
            E I    + +G++ KDGVV+  EK+ T      S + +K+Y+I D +A   AG + DA  L    +++A  Y    +    V  +     +    Y  F    P+ V  L  G D   G  +Y  DP G     K              +L+  +  +I  +EAV+LA++ +   M   S + D +++ ++      + ++   SPE + ++L K
Sbjct:    6 EKIYKGTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYF----PYLVQLLIGGIDSE-GKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKI-----TEDEFYQYSPEEVEQILAK 210          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSMB_METJA (Proteasome subunit beta OS=Methanocaldococcus jannaschii GN=psmB PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.723e-11
Identity = 45/184 (24.46%), Postives = 80/184 (43.48%), Query Frame = -2
Query:  238 SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWK-XXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 786
            + +G++  D V+L  +K+ +   L      +K+YKIDD++A  +AG + DA  ++     +A+ Y       +P       L +       F    PF    +  G+D   G +L+  DP G     K              +L+  Y  D+S EE ++LAL  L   M+  + + + + LA +
Sbjct:    8 TTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMF----PFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISLAVI 187          
The following BLAST results are available for this feature:
BLAST of DT214504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PSA1_HUMAN2.101e-1735.04Proteasome subunit alpha type-1 OS=Homo sapiens GN... [more]
PSA1_BOVIN2.101e-1735.04Proteasome subunit alpha type-1 OS=Bos taurus GN=P... [more]
PSA1_RAT2.744e-1735.04Proteasome subunit alpha type-1 OS=Rattus norvegic... [more]
PSMB_METTH1.275e-1427.42Proteasome subunit beta OS=Methanobacterium thermo... [more]
PSA6_YEAST2.174e-1426.99Proteasome component C7-alpha OS=Saccharomyces cer... [more]
PSMB_PYRHO1.193e-1228.41Proteasome subunit beta OS=Pyrococcus horikoshii G... [more]
PSA1_TRYBB2.035e-1233.33Proteasome subunit alpha type-1 OS=Trypanosoma bru... [more]
PSMB_ARCFU7.734e-1224.65Proteasome subunit beta OS=Archaeoglobus fulgidus ... [more]
PSMB_METJA1.723e-1124.46Proteasome subunit beta OS=Methanocaldococcus jann... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F08_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-13F08-K15-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214504 ID=DT214504; Name=DT214504; organism=Citrus sinensis; type=EST; length=826bp
AATACAAGCTTCTGATCTCACATCAAACACATCGATCTGCAGTTCTTTGG
GCAAACTCACTGGAGTAATACAAGTACTGTCCAAATTGCTTTGAAATTTA
GTTATAATGAAAGCATGGAAGATCTTCATTCAAGAAGTCTCAGCAGCAGG
TTGGGTTACTCCATGCTTCACCAACAACTTGCTCAGAGCTTCGGGTGAGC
AAACTTGGTACTTCACTTTGCCAGAAGGCATCAGGAAAACCTCAGCTAAT
TCAAGCTTATCAGAAGTAAGACTGGTGCTGTCCATGGTTTTGCTGAGCAC
CTTCAGTGCTAGTTGAACTGCTTCTTCCCTTGAAATATCATCCTTGTAAT
CTTGTTTGAGGATTGATTGTGCAGCCTGGTTATTTGCACCAATAGCAGCA
GCTTTCCAACCACCATAGTTTCCACTAGGATCACTCATGTAAAGTTGGAA
GCCATAATTTTTGTCCCACCCTGCAAAAAGAAATGAAACACCAAAGGGGC
GGAGACCGCCAAACTGGGTGTAACCTTGCTTTGTATCACAAAGAGATTGA
ACAAGCTGCTCAACAGGCATTGGCTCTTGGTAGGCATATGTGTAACGTTG
GGCTTGGACCCTGGCAGTGTTGATTAGGATGTTGGCATCAGACATTATTC
CAGCTACGGCACAAGCAACATGATCATCAATCTTGTACATCTTCTCAGTG
GAAGTTGAGGTTTGCAGGAGCTTCGAAGTAACCTTCTTTTCACCAACCAA
GACAACCCCATCTTTCGATAATATTCCAATTGCACTACCAGCATTTCCAA
TGGCCTCCATTGCATACTCAACTTGA
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