DT214504

Overview
NameDT214504
Unique NameDT214504
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12192 contig Csv1_Contig12192:190..1015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA5_SOYBN (Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.038e-32
Identity = 79/199 (39.70%), Postives = 123/199 (61.81%), Query Frame = -2
Query:  238 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGY---TQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 825
            QVEYA+EAI    +AIG+ +K+GVVL  EK++TS LL+ S S EK+ +ID+H+ CA++G+++DA  L+  ARV+ Q + ++Y EPM VE   Q+LCD    +    +    RPFGVS L AG D+N G  LY +DPSG +                S L++ +  D++ +EA  +AL +L + M+   +T + +++A+V
Sbjct:   23 QVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPS-SVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDEN-GPSLYYTDPSGTFWQCNGKAIGSGSEGADSSLQEQFNKDLTLQEAETIALSILKQVMEE-KVTPNNVDIAKV 218          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSMA_METBF (Proteasome subunit alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=psmA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.356e-32
Identity = 80/229 (34.93%), Postives = 134/229 (58.52%), Query Frame = -2
Query:  151 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEA----LSKLLVKHGVTQ 825
            QVEYA EA+    +A+GI + DGVVL+ +K++TS+L++   S EK+++IDDH+  A +G+++DA  L++ ARV+AQ    +Y EP+ VE + + +CD KQ YTQ+GG+RP+G + L AG D N   +L+ +DPSG    +K             + + +Y+ D++ + A+ L +  L +  +     +  LE+  V L      K++   PE     + ++L KH  T+
Sbjct:   24 QVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAE-SIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDNLP-RLFETDPSGALLEYKATAIGAGRNAVVEVFEAEYRQDMNMDAAILLGMDALYRAAEG-KFDASTLEVGIVSLQDK---KFRKLVPEEVENYVQQILEKHKETE 246          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSMA_METTE (Proteasome subunit alpha OS=Methanosarcina thermophila GN=psmA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.771e-32
Identity = 82/229 (35.81%), Postives = 133/229 (58.08%), Query Frame = -2
Query:  151 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEA----LSKLLVKHGVTQ 825
            QVEYA EA+    +A+GI + DGVVL+ +K++TS+L++   S EK+++IDDH+  A +G+++DA  L++ ARV+AQ    +Y E + VE + + +CD KQ YTQ+GG+RP+G + L AG D     +L+ +DPSG    +K             + + DYK+D++ E A+ L +  L K  +     +  LE+  V L      K++   PE     + ++L KH  T+
Sbjct:   22 QVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAE-SIEKIFQIDDHIGAATSGLVADARALVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDKRP-RLFETDPSGALLEYKATAIGAGRNAVVEVFEADYKEDMNIEAAILLGMDALYKAAEG-KFDAGTLEVGVVSLQDK---KFRKLEPEEVGNYVQQILEKHKETE 244          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA7_SOLLC (Proteasome subunit alpha type-7 OS=Solanum lycopersicum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.771e-32
Identity = 74/184 (40.22%), Postives = 113/184 (61.41%), Query Frame = -2
Query:  277 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGF-QLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDS 825
            QVEYAMEA+    +A+G+   D VVL  EKK T KL Q S S  K+  +DDH+A A AG+ +DA +L+N AR++ Q +    ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +  WK           +  L+++YK + S +E V+LA++ L + ++S
Sbjct:   19 QVEYAMEAVRKGNAAVGVRGTDTVVLGVEKKSTPKL-QDSRSVRKIVNLDDHIALACAGLKADARVLVNKARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIIGFDPHTGVPSLYQTDPSGTFSAWKANATGRNSNSTREFLEKNYK-ETSGQETVKLAIRALLEVVES 200          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSMA_METMA (Proteasome subunit alpha OS=Methanosarcina mazei GN=psmA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.787e-32
Identity = 80/225 (35.56%), Postives = 132/225 (58.67%), Query Frame = -2
Query:  163 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALS----KLLVKH 825
            QVEYA EA+    +A+GI + DGVVL+ +K++TS+L++   S EK+++IDDH+  A +G+++DA  L++ ARV+AQ    +Y E + VE + + +CD KQ YTQ+GG+RP+G + L AG D N   +L+ +DPSG    +K             + + DY++D++ + A+ L +  L K  +     +  LE+  V L      K++   PE +     ++L KH
Sbjct:   24 QVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAE-SIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDNKP-RLFETDPSGALLEYKATAIGAGRNAVVEVFEADYREDMNIDAAILLGMDALYKAAEG-KFDAGTLEVGVVSLEDK---KFRKLGPEEVENYVHQILEKH 242          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSMA_AERPE (Proteasome subunit alpha OS=Aeropyrum pernix GN=psmA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.787e-32
Identity = 77/204 (37.75%), Postives = 118/204 (57.84%), Query Frame = -2
Query:  238 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVL----SKTMD----STSLTSDKLELAEV 825
            QV YA EA+    +++GI + +GVV+  EK+    L+      +K+YKIDDH+  A AG+  D  ILI+ ARV   R+   Y EP PVE + + + D KQ YTQ GG+RPFGV+ +FAG + +   ++Y +DP G Y  +K             + ++ Y+ D+S EEA +LALK+L     KT++    + +   D++ELA +
Sbjct:   27 QVRYAFEAVKKGWTSLGIKTNEGVVIAAEKRFIGPLVDID-DIDKIYKIDDHIGVAFAGMGGDGRILIDYARVFTVRHRLLYGEPPPVELVAKVVADVKQAYTQHGGVRPFGVALIFAGVNPDGTTKVYRTDPGGQYFSFKAIAIGSGEQVANEMFEKHYRSDMSLEEATKLALKILYAIIRKTVEDKEKAIATLPDQVELAYI 229          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA5_SCHPO (Probable proteasome subunit alpha type-5 OS=Schizosaccharomyces pombe GN=SPAC323.02c PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.787e-32
Identity = 84/202 (41.58%), Postives = 124/202 (61.39%), Query Frame = -2
Query:  238 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCD--TKQGYTQFGG----LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 825
            QVEYA+EAI    +AIG+ +KD VVL  EK++TS L++ S S EK+++ID H+ CA++G+ +DA  +I  ARVQ Q + + Y EP  +E   QS+CD   + G  + G      RPFGV+ L AG D+ +G QLY S+PSG Y  ++           +S L +++  D++ EEA  L LKVL + M+   L S  ++LA+V
Sbjct:   23 QVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLME-SHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRPFGVALLIAGIDE-HGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFHKDMTLEEAEVLILKVLRQVMEE-KLDSKNVQLAKV 221          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSMA_METS5 (Proteasome subunit alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=psmA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.148e-31
Identity = 70/181 (38.67%), Postives = 112/181 (61.88%), Query Frame = -2
Query:  283 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTM 825
            QV+YA EA+    + +G+ +K+ VV++GEKK  S+LL    S EK++ +DDHV C+ AG+ SD  ILI+ AR  + ++   Y EP+ ++ L + + D KQ YTQ GG+RPFGV+ +  G D+    +L+M++PSG +  ++              L+++YK+D+S EE + LAL  L  T+
Sbjct:   25 QVDYAFEAVKKGWTTLGVKTKNAVVILGEKKKASQLLDVD-SIEKVFLLDDHVGCSFAGLASDGRILIDYARNSSLQHRLVYDEPISIDYLTKLISDVKQMYTQHGGVRPFGVALIVGGVDRGV-TKLFMTEPSGQFMPYQAVAIGQGGYNATDYLEKNYKEDLSVEETILLALNALKVTL 203          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA7_CICAR (Proteasome subunit alpha type-7 OS=Cicer arietinum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.148e-31
Identity = 73/184 (39.67%), Postives = 113/184 (61.41%), Query Frame = -2
Query:  277 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGF-QLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDS 825
            QVEYA+EA+    +A+G+   D VVL  EKK T+KL Q + S  K+  +DDH+A A AG+ +DA +LIN ARV+ Q +    ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D   G   LY +DPSG +  WK           +  L++++K + S +E V+LA++ L + ++S
Sbjct:   19 QVEYALEAVRKGNAAVGVRGTDNVVLGVEKKSTAKL-QDTRSVRKIVNLDDHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGSPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNFK-ETSGQETVKLAIRALLEVVES 200          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA2_TRYBB (Proteasome subunit alpha type-2 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.148e-31
Identity = 75/196 (38.27%), Postives = 109/196 (55.61%), Query Frame = -2
Query:  238 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 825
            Q+EYA  A     +A+G+ + DGVV+  EKK TS L  + T   K++ +DDHV C  +GI  D  +L++ AR   QRY   Y EPMP+ QLV+ +    Q +TQ GG+RPFG S L AG D   G  LY  DPSG +  WK           ++ L++ Y +++  E+AV  AL  L +  D   +T++  ++  V
Sbjct:   19 QIEYATTAASKGTTALGVKATDGVVIAAEKKTTSPLADSLT-LHKVFALDDHVGCTYSGIGPDCRVLVDAARRACQRYRLTYHEPMPISQLVRQISFLFQEFTQSGGVRPFGCSLLVAGADSR-GNHLYQLDPSGTFWTWKATSIGKGSPDARTFLEKRYTNEMEIEDAVHTALLTLKEGFDG-RMTAENTQVGRV 211          
The following BLAST results are available for this feature:
BLAST of DT214504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PSA5_SOYBN1.038e-3239.70Proteasome subunit alpha type-5 OS=Glycine max GN=... [more]
PSMA_METBF1.356e-3234.93Proteasome subunit alpha OS=Methanosarcina barkeri... [more]
PSMA_METTE1.771e-3235.81Proteasome subunit alpha OS=Methanosarcina thermop... [more]
PSA7_SOLLC1.771e-3240.22Proteasome subunit alpha type-7 OS=Solanum lycoper... [more]
PSMA_METMA8.787e-3235.56Proteasome subunit alpha OS=Methanosarcina mazei G... [more]
PSMA_AERPE8.787e-3237.75Proteasome subunit alpha OS=Aeropyrum pernix GN=ps... [more]
PSA5_SCHPO8.787e-3241.58Probable proteasome subunit alpha type-5 OS=Schizo... [more]
PSMA_METS51.148e-3138.67Proteasome subunit alpha OS=Metallosphaera sedula ... [more]
PSA7_CICAR1.148e-3139.67Proteasome subunit alpha type-7 OS=Cicer arietinum... [more]
PSA2_TRYBB1.148e-3138.27Proteasome subunit alpha type-2 OS=Trypanosoma bru... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F08_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-13F08-K15-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214504 ID=DT214504; Name=DT214504; organism=Citrus sinensis; type=EST; length=826bp
AATACAAGCTTCTGATCTCACATCAAACACATCGATCTGCAGTTCTTTGG
GCAAACTCACTGGAGTAATACAAGTACTGTCCAAATTGCTTTGAAATTTA
GTTATAATGAAAGCATGGAAGATCTTCATTCAAGAAGTCTCAGCAGCAGG
TTGGGTTACTCCATGCTTCACCAACAACTTGCTCAGAGCTTCGGGTGAGC
AAACTTGGTACTTCACTTTGCCAGAAGGCATCAGGAAAACCTCAGCTAAT
TCAAGCTTATCAGAAGTAAGACTGGTGCTGTCCATGGTTTTGCTGAGCAC
CTTCAGTGCTAGTTGAACTGCTTCTTCCCTTGAAATATCATCCTTGTAAT
CTTGTTTGAGGATTGATTGTGCAGCCTGGTTATTTGCACCAATAGCAGCA
GCTTTCCAACCACCATAGTTTCCACTAGGATCACTCATGTAAAGTTGGAA
GCCATAATTTTTGTCCCACCCTGCAAAAAGAAATGAAACACCAAAGGGGC
GGAGACCGCCAAACTGGGTGTAACCTTGCTTTGTATCACAAAGAGATTGA
ACAAGCTGCTCAACAGGCATTGGCTCTTGGTAGGCATATGTGTAACGTTG
GGCTTGGACCCTGGCAGTGTTGATTAGGATGTTGGCATCAGACATTATTC
CAGCTACGGCACAAGCAACATGATCATCAATCTTGTACATCTTCTCAGTG
GAAGTTGAGGTTTGCAGGAGCTTCGAAGTAACCTTCTTTTCACCAACCAA
GACAACCCCATCTTTCGATAATATTCCAATTGCACTACCAGCATTTCCAA
TGGCCTCCATTGCATACTCAACTTGA
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