CX308527

Overview
NameCX308527
Unique NameCX308527
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length446
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308527 vs. ExPASy Swiss-Prot
Match: HBL_HORVU (Non-symbiotic hemoglobin OS=Hordeum vulgare GN=HB PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.224e-44
Identity = 85/119 (71.43%), Postives = 105/119 (88.24%), Query Frame = 1
Query:   88 FTEE*EALVVRSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 444
            F+EE EALV++SW +MKK++  LGL+FFL+IFEIAPSA+++F FLRDS+VPLE N KLK HA+SVFVMTCE+A QLRKAGK+TVRE+TLK+LG  H KYGV + HFEVT+F+LLETIKE
Sbjct:   10 FSEEKEALVLKSWAIMKKDSANLGLRFFLKIFEIAPSARQMFPFLRDSDVPLETNPKLKTHAVSVFVMTCEAAAQLRKAGKITVRETTLKRLGGTHLKYGVADGHFEVTRFALLETIKE 128          
BLAST of CX308527 vs. ExPASy Swiss-Prot
Match: HBL1_ORYSJ (Non-symbiotic hemoglobin 1 OS=Oryza sativa subsp. japonica GN=HB1 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 2.308e-43
Identity = 82/120 (68.33%), Postives = 106/120 (88.33%), Query Frame = 1
Query:   85 AFTEE*EALVVRSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 444
            +F+EE EALV++SW ++KK++  + L+FFL+IFE+APSA ++FSFLR+S+VPLE+N KLK HAMSVFVMTCE+A QLRKAGKVTVR++TLK+LGA H KYGV + HFEV KF+LL+TIKE
Sbjct:   13 SFSEEQEALVLKSWAILKKDSANIALRFFLKIFEVAPSASQMFSFLRNSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRDTTLKRLGATHLKYGVGDAHFEVVKFALLDTIKE 132          
BLAST of CX308527 vs. ExPASy Swiss-Prot
Match: HBL3_ORYSJ (Non-symbiotic hemoglobin 3 OS=Oryza sativa subsp. japonica GN=HB3 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 7.426e-42
Identity = 80/119 (67.23%), Postives = 104/119 (87.39%), Query Frame = 1
Query:   88 FTEE*EALVVRSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 444
            FTEE EALV++SW +MK ++  +G +FFL+IFE+APSA++LFSFLR+S+VPLE+N KLK HAM+VFVMTCE+A QLRK G+VTVR++T+K+LG+ HFK GV + HFEV KF+LLETIKE
Sbjct:   16 FTEEQEALVLKSWAIMKNDSAHIGHRFFLKIFEVAPSARQLFSFLRNSDVPLEKNPKLKIHAMAVFVMTCEAAAQLRKTGRVTVRDTTIKRLGSTHFKNGVSDAHFEVAKFALLETIKE 134          
BLAST of CX308527 vs. ExPASy Swiss-Prot
Match: HBL4_ORYSJ (Non-symbiotic hemoglobin 4 OS=Oryza sativa subsp. japonica GN=HB4 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.829e-40
Identity = 77/119 (64.71%), Postives = 102/119 (85.71%), Query Frame = 1
Query:   88 FTEE*EALVVRSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 444
            FTEE EALV++SW +MK ++  +G +FFL+IFE+APSA+ LFSFLR+S+VPLE+N  LK HAM+VFVMTCE+A QLRK G+VTVR++T+K+LG+ HFK GV + HFEV +F+LLETIK+
Sbjct:   13 FTEEQEALVLKSWAIMKDDSANIGHRFFLKIFEVAPSARHLFSFLRNSDVPLEKNPNLKKHAMAVFVMTCEAAAQLRKTGRVTVRDTTIKRLGSTHFKNGVSDTHFEVARFALLETIKD 131          
BLAST of CX308527 vs. ExPASy Swiss-Prot
Match: HBL2_ARATH (Non-symbiotic hemoglobin 2 OS=Arabidopsis thaliana GN=AHB2 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.314e-30
Identity = 65/119 (54.62%), Postives = 88/119 (73.95%), Query Frame = 1
Query:   88 FTEE*EALVVRSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 444
            FTE+ EALV  SW ++K++  +  L FF +I EIAP+A+ LFSFLRDS+     N KLK HA+ VF MTCE+A+QLR+ GKV V ++TL+ LG++H K GV++ HFEV K +LL T+KE
Sbjct:    6 FTEKQEALVKESWEILKQDIPKYSLHFFSQILEIAPAAKGLFSFLRDSDEVPHNNPKLKAHAVKVFKMTCETAIQLREEGKVVVADTTLQYLGSIHLKSGVIDPHFEVVKEALLRTLKE 124          
BLAST of CX308527 vs. ExPASy Swiss-Prot
Match: HBL2_BRANA (Non-symbiotic hemoglobin 2 OS=Brassica napus GN=HB2 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.241e-30
Identity = 64/119 (53.78%), Postives = 89/119 (74.79%), Query Frame = 1
Query:   88 FTEE*EALVVRSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 444
            FTE+ EALV  SW ++K++  +  L FF +I EIAP+A+ +FSFLRD++     N KLK HA+ VF MTCE+A+QLR+ GKV V ++TL+ LG+VHFK GV++ HFEV K +L+ T+KE
Sbjct:    6 FTEKQEALVKESWEILKQDIPKYSLHFFSQILEIAPAAKDMFSFLRDTDEVPHNNPKLKAHAVKVFKMTCETAIQLREKGKVVVADTTLQYLGSVHFKSGVLDPHFEVVKEALVRTLKE 124          
BLAST of CX308527 vs. ExPASy Swiss-Prot
Match: HBL2_SOLLC (Non-symbiotic hemoglobin 2 OS=Solanum lycopersicum GN=HB2 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 7.209e-29
Identity = 64/119 (53.78%), Postives = 86/119 (72.27%), Query Frame = 1
Query:   88 FTEE*EALVVRSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 444
            FT++ EALV  SW  MK++  +L L+FF  I EIAP A+ +FSFL+DS+   E N KL+ HA+ VF MTCESA+QLR+ G+V V E+TLK LG++H +  V + HFEV K +LL T+KE
Sbjct:    3 FTDKQEALVRDSWEFMKQDIPQLSLRFFSLILEIAPVAKNMFSFLKDSDELPENNPKLRAHAVKVFKMTCESAIQLREKGEVVVGETTLKYLGSIHLQKRVADPHFEVVKEALLRTVKE 121          
BLAST of CX308527 vs. ExPASy Swiss-Prot
Match: HBL2_GOSHI (Non-symbiotic hemoglobin 2 OS=Gossypium hirsutum GN=HB2 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 7.209e-29
Identity = 65/119 (54.62%), Postives = 83/119 (69.75%), Query Frame = 1
Query:   88 FTEE*EALVVRSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 444
            FTE+ E LV  SW V+K++     L+FF  I EIAP A+ +FSFLR+S    + N KLK HA+ VF MTCESA+QLR+ G+V V ++TLK LG VH K GV + HFEV K +LL TI+E
Sbjct:    3 FTEKQEGLVKESWEVLKQDIPHSSLRFFSLILEIAPGAKNMFSFLRESEEIPQNNPKLKAHAVKVFKMTCESAIQLREKGEVVVADTTLKYLGTVHVKSGVKDPHFEVVKEALLRTIEE 121          
BLAST of CX308527 vs. ExPASy Swiss-Prot
Match: HBL0_PHYPA (Non-symbiotic hemoglobin 0 OS=Physcomitrella patens GN=GLB0 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.273e-25
Identity = 55/120 (45.83%), Postives = 83/120 (69.17%), Query Frame = 1
Query:   82 RAFTEE*EALVVRSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            + +++E E LV +SW ++KK+A   G+ FF ++FEIAP A+ ++SFLRDS +P E+N K+K HA  VF+MT ++AVQL + G   V ES L+KL A H   GV ++ FE+ K ++L  I+
Sbjct:   22 KTYSKENEQLVKQSWEILKKDAQRNGINFFRKVFEIAPGAKAMYSFLRDSTIPFEENPKVKNHARYVFMMTGDAAVQLGEKGAYQVLESKLQKLAATHVNAGVTDDQFEIVKEAILYAIE 141          
BLAST of CX308527 vs. ExPASy Swiss-Prot
Match: HBPA_CASGL (Hemoglobin A OS=Casuarina glauca GN=SYMA PE=2 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 6.982e-24
Identity = 57/120 (47.50%), Postives = 77/120 (64.17%), Query Frame = 1
Query:   85 AFTEE*EALVVRSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 444
            A TE  EAL+ +SW V+K+N     L+ F  I E AP ++ +FSFL+DSN   E N KLK HA  +F   CESA +LR+ G+     +TLK+LG++H K  + + HFEV K +LL TIKE
Sbjct:    2 ALTERQEALLKQSWEVLKQNIPGHSLRLFALIIEAAPESKYVFSFLKDSNEIPENNPKLKAHAAVIFKTICESATELRQKGQAVWDNNTLKRLGSIHLKNKITDPHFEVMKGALLGTIKE 121          
The following BLAST results are available for this feature:
BLAST of CX308527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
HBL_HORVU1.224e-4471.43Non-symbiotic hemoglobin OS=Hordeum vulgare GN=HB ... [more]
HBL1_ORYSJ2.308e-4368.33Non-symbiotic hemoglobin 1 OS=Oryza sativa subsp. ... [more]
HBL3_ORYSJ7.426e-4267.23Non-symbiotic hemoglobin 3 OS=Oryza sativa subsp. ... [more]
HBL4_ORYSJ1.829e-4064.71Non-symbiotic hemoglobin 4 OS=Oryza sativa subsp. ... [more]
HBL2_ARATH1.314e-3054.62Non-symbiotic hemoglobin 2 OS=Arabidopsis thaliana... [more]
HBL2_BRANA2.241e-3053.78Non-symbiotic hemoglobin 2 OS=Brassica napus GN=HB... [more]
HBL2_SOLLC7.209e-2953.78Non-symbiotic hemoglobin 2 OS=Solanum lycopersicum... [more]
HBL2_GOSHI7.209e-2954.62Non-symbiotic hemoglobin 2 OS=Gossypium hirsutum G... [more]
HBL0_PHYPA1.273e-2545.83Non-symbiotic hemoglobin 0 OS=Physcomitrella paten... [more]
HBPA_CASGL6.982e-2447.50Hemoglobin A OS=Casuarina glauca GN=SYMA PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC21001A01Rv AbsLeaSub1 Citrus clementina cDNA clone C21001A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308527 ID=CX308527; Name=CX308527; organism=Citrus clementina; type=EST; length=446bp
GCGGGGATTCAACAACATTTTGTGTATCACATTCAATCCTCAGGTGTCCA
AAAGAAATCAATGGCCAACATTAACGAAGGTAGAGCCTTTACTGAAGAGT
AAGAAGCTTTAGTTGTCAGGTCATGGAATGTAATGAAGAAGAATGCTGGA
GAATTGGGTCTTAAATTCTTCTTGAGGATCTTTGAGATTGCACCATCAGC
CCAAAAGCTGTTCTCATTCTTGAGAGACTCAAATGTGCCTCTAGAGCAGA
ACCAGAAGCTCAAGCCCCACGCCATGTCTGTTTTTGTTATGACGTGTGAA
TCAGCAGTGCAACTGAGGAAAGCAGGCAAAGTGACAGTAAGAGAATCAAC
TCTAAAAAAATTAGGAGCTGTCCACTTCAAATATGGTGTTGTTAATGAGC
ATTTTGAGGTCACAAAATTTTCACTACTGGAAACCATAAAAGAGGC
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