CX308527

Overview
NameCX308527
Unique NameCX308527
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length446
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308527 vs. ExPASy Swiss-Prot
Match: HBP1_CASGL (Hemoglobin-1 OS=Casuarina glauca PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 6.982e-24
Identity = 57/120 (47.50%), Postives = 77/120 (64.17%), Query Frame = 1
Query:   85 AFTEE*EALVVRSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 444
            A TE+ EAL+ +SW V+K+N     L+ F  I E AP ++ +FSFL+DSN   E N KLK HA  +F   CESA +LR+ G      +TLK+LG++H K  + + HFEV K +LL TIKE
Sbjct:    2 ALTEKQEALLKQSWEVLKQNIPAHSLRLFALIIEAAPESKYVFSFLKDSNEIPENNPKLKAHAAVIFKTICESATELRQKGHAVWDNNTLKRLGSIHLKNKITDPHFEVMKGALLGTIKE 121          
BLAST of CX308527 vs. ExPASy Swiss-Prot
Match: LGB_CANLI (Leghemoglobin OS=Canavalia lineata PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.780e-19
Identity = 56/120 (46.67%), Postives = 74/120 (61.67%), Query Frame = 1
Query:   85 AFTEE*EALVVRSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 444
            AF+E+ E+LV  SW   K+N       F+  I E AP+AQ +FSFL +   P   N KLK HA  VF MT +SAVQLR  G+V + + T   LG+VH + GV++ HF V K +LL+T KE
Sbjct:    3 AFSEKQESLVKSSWEAFKQNVPHHSAVFYTLILEKAPAAQNMFSFLSNGVDP--NNPKLKAHAEKVFKMTVDSAVQLRAKGEVVLADPT---LGSVHVQKGVLDPHFLVVKEALLKTFKE 117          
BLAST of CX308527 vs. ExPASy Swiss-Prot
Match: LGB2_MEDTR (Leghemoglobin 2 OS=Medicago truncatula GN=LB2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.324e-19
Identity = 57/119 (47.90%), Postives = 79/119 (66.39%), Query Frame = 1
Query:   88 FTEE*EALVVRSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 444
            FTE+ EALV  SW + K+N G   L F+  I E AP+A+ +FSFL+D+   ++ + KL+ HA  VF M  +SAVQLR  G V + ++TL   GA+H + GVV+ HF V K +LL+TIKE
Sbjct:    3 FTEKQEALVNSSWELFKQNPGNSVL-FYTIILEKAPAAKGMFSFLKDT-AGVQDSPKLQSHAEKVFGMVRDSAVQLRATGGVVLGDATL---GAIHIQKGVVDPHFVVVKEALLKTIKE 116          
BLAST of CX308527 vs. ExPASy Swiss-Prot
Match: LGB3_PEA (Leghemoglobin Lb120-1 OS=Pisum sativum PE=2 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 3.036e-19
Identity = 56/119 (47.06%), Postives = 79/119 (66.39%), Query Frame = 1
Query:   88 FTEE*EALVVRSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 444
            FTE+ EALV  SW + K+N     + F+  I + AP+A+ +FSFL+DS   +  + KL+ HA  VF M  +SA+QLR +G+V V ++TL   GA+H + GVV+ HF V K +LLETIKE
Sbjct:    3 FTEKQEALVNSSWELFKQNPS-YSVLFYTIILKKAPAAKGMFSFLKDS-AEVVDSPKLQAHAEKVFGMVHDSAIQLRASGEVVVGDATL---GAIHIQKGVVDPHFVVVKEALLETIKE 116          
BLAST of CX308527 vs. ExPASy Swiss-Prot
Match: LGB2_LUPLU (Leghemoglobin-2 OS=Lupinus luteus PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 3.036e-19
Identity = 52/120 (43.33%), Postives = 75/120 (62.50%), Query Frame = 1
Query:   85 AFTEE*EALVVRSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 444
            A TE   ALV  SW     N  +   +FF+ + EIAP+A+ LFSFL+ ++   + N +L+ HA  VF +  E+A+QL+  G V V ++TLK LG+VH   GV + HF V K ++L+TIKE
Sbjct:    3 ALTESQAALVKSSWEEFNANIPKHTHRFFILVLEIAPAAKDLFSFLKGTSEVPQNNPELQAHAGKVFKLVYEAAIQLQVTG-VVVTDATLKNLGSVHVSKGVADAHFPVVKEAILKTIKE 121          
BLAST of CX308527 vs. ExPASy Swiss-Prot
Match: LGB6_PEA (Leghemoglobin Lb120-34 OS=Pisum sativum PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 6.763e-19
Identity = 55/119 (46.22%), Postives = 79/119 (66.39%), Query Frame = 1
Query:   88 FTEE*EALVVRSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 444
            FTE+ EALV  SW + K+N     + F+  I + AP+A+ +FSFL+DS   +  + KL+ HA  VF M  +SA+QLR +G+V + ++TL   GA+H + GVV+ HF V K +LLETIKE
Sbjct:    3 FTEKQEALVNSSWELFKQNPS-YSVLFYTIILKKAPAAKGMFSFLKDS-AEVVDSPKLQAHAEKVFGMVHDSAIQLRASGEVVLGDATL---GAIHIQKGVVDPHFVVVKEALLETIKE 116          
BLAST of CX308527 vs. ExPASy Swiss-Prot
Match: LGB3_MEDSA (Leghemoglobin-3 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.154e-18
Identity = 56/119 (47.06%), Postives = 77/119 (64.71%), Query Frame = 1
Query:   88 FTEE*EALVVRSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 444
            FT++ EALV  SW   K+N G   L F+  I E AP+A+ +FSFL+DS   ++ + KL+ HA  VF M  +SA QLR  G V + ++TL   GA+H + GVV+ HF V K +LL+TIKE
Sbjct:    3 FTDKQEALVNSSWESFKQNPGNSVL-FYTIILEKAPAAKGMFSFLKDS-AGVQDSPKLQSHAEKVFGMVRDSAAQLRATGGVVLGDATL---GAIHIQKGVVDPHFAVVKEALLKTIKE 116          
BLAST of CX308527 vs. ExPASy Swiss-Prot
Match: LGB5_PEA (Leghemoglobin Lb120-29 OS=Pisum sativum PE=2 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 1.507e-18
Identity = 55/119 (46.22%), Postives = 79/119 (66.39%), Query Frame = 1
Query:   88 FTEE*EALVVRSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 444
            FT++ EALV  SW + K+N G   + F+  I + AP+ + +FSFL+DS   +  + KL+ HA  VF M  +SAVQLR +G+V + ++TL   GA+H + GVV+ HF V K +LLETIKE
Sbjct:    3 FTDKQEALVNSSWELFKQNPG-YSVLFYNIILKKAPATKGMFSFLKDS-AGVVDSPKLQAHAEKVFGMVHDSAVQLRVSGEVVLGDATL---GAIHIQKGVVDSHFVVVKEALLETIKE 116          
BLAST of CX308527 vs. ExPASy Swiss-Prot
Match: LGB4_MEDSA (Leghemoglobin OS=Medicago sativa GN=LB3 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.507e-18
Identity = 53/119 (44.54%), Postives = 77/119 (64.71%), Query Frame = 1
Query:   88 FTEE*EALVVRSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 444
            FT + EALV  SW   K+N     + F+  I E AP+A+ +FSFL+DS   ++ + +L+ HA  VF M  +SAVQLR  G+V + ++T   LG++H + GVV+ HF V K +LL+TIKE
Sbjct:    3 FTADQEALVNSSWESFKQNLPGYSVFFYTTILEKAPAAKGMFSFLKDS-AGVQDSPQLQAHAEKVFGMVRDSAVQLRATGEVVLGDAT---LGSIHIQKGVVDPHFVVVKEALLKTIKE 117          
BLAST of CX308527 vs. ExPASy Swiss-Prot
Match: LGB1_MEDSA (Leghemoglobin-1 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.968e-18
Identity = 52/120 (43.33%), Postives = 78/120 (65.00%), Query Frame = 1
Query:   85 AFTEE*EALVVRSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 444
            +FT++ EALV  SW   K+N     + F+  + E AP+A+ LFSFL++S   ++ + +L+ HA  VF +  +SAVQLR  G V + ++T   LGA+H + GVV+ HF V K +LL+TIKE
Sbjct:    2 SFTDKQEALVNSSWEAFKQNLPRYSVFFYTVVLEKAPAAKGLFSFLKNS-AEVQDSPQLQAHAEKVFGLVRDSAVQLRATGGVVLGDAT---LGAIHVRKGVVDPHFVVVKEALLKTIKE 117          
The following BLAST results are available for this feature:
BLAST of CX308527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
HBP1_CASGL6.982e-2447.50Hemoglobin-1 OS=Casuarina glauca PE=1 SV=2[more]
LGB_CANLI1.780e-1946.67Leghemoglobin OS=Canavalia lineata PE=2 SV=1[more]
LGB2_MEDTR2.324e-1947.90Leghemoglobin 2 OS=Medicago truncatula GN=LB2 PE=2... [more]
LGB3_PEA3.036e-1947.06Leghemoglobin Lb120-1 OS=Pisum sativum PE=2 SV=3[more]
LGB2_LUPLU3.036e-1943.33Leghemoglobin-2 OS=Lupinus luteus PE=1 SV=2[more]
LGB6_PEA6.763e-1946.22Leghemoglobin Lb120-34 OS=Pisum sativum PE=2 SV=3[more]
LGB3_MEDSA1.154e-1847.06Leghemoglobin-3 OS=Medicago sativa PE=2 SV=1[more]
LGB5_PEA1.507e-1846.22Leghemoglobin Lb120-29 OS=Pisum sativum PE=2 SV=3[more]
LGB4_MEDSA1.507e-1844.54Leghemoglobin OS=Medicago sativa GN=LB3 PE=2 SV=1[more]
LGB1_MEDSA1.968e-1843.33Leghemoglobin-1 OS=Medicago sativa PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC21001A01Rv AbsLeaSub1 Citrus clementina cDNA clone C21001A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308527 ID=CX308527; Name=CX308527; organism=Citrus clementina; type=EST; length=446bp
GCGGGGATTCAACAACATTTTGTGTATCACATTCAATCCTCAGGTGTCCA
AAAGAAATCAATGGCCAACATTAACGAAGGTAGAGCCTTTACTGAAGAGT
AAGAAGCTTTAGTTGTCAGGTCATGGAATGTAATGAAGAAGAATGCTGGA
GAATTGGGTCTTAAATTCTTCTTGAGGATCTTTGAGATTGCACCATCAGC
CCAAAAGCTGTTCTCATTCTTGAGAGACTCAAATGTGCCTCTAGAGCAGA
ACCAGAAGCTCAAGCCCCACGCCATGTCTGTTTTTGTTATGACGTGTGAA
TCAGCAGTGCAACTGAGGAAAGCAGGCAAAGTGACAGTAAGAGAATCAAC
TCTAAAAAAATTAGGAGCTGTCCACTTCAAATATGGTGTTGTTAATGAGC
ATTTTGAGGTCACAAAATTTTCACTACTGGAAACCATAAAAGAGGC
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