CX308539

Overview
NameCX308539
Unique NameCX308539
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length445
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: HBL_HORVU (Non-symbiotic hemoglobin OS=Hordeum vulgare GN=HB PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.411e-45
Identity = 86/119 (72.27%), Postives = 106/119 (89.08%), Query Frame = 3
Query:   87 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            F+EE+EALV+KSW +MKK++  LGL+FFL+IFEIAPSA+++F FLRDS+VPLE N KLK HA+SVFVMTCE+A QLRKAGK+TVRE+TLK+LG  H KYGV + HFEVT+F+LLETIKE
Sbjct:   10 FSEEKEALVLKSWAIMKKDSANLGLRFFLKIFEIAPSARQMFPFLRDSDVPLETNPKLKTHAVSVFVMTCEAAAQLRKAGKITVRETTLKRLGGTHLKYGVADGHFEVTRFALLETIKE 128          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: HBL1_ORYSJ (Non-symbiotic hemoglobin 1 OS=Oryza sativa subsp. japonica GN=HB1 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 9.149e-45
Identity = 84/120 (70.00%), Postives = 107/120 (89.17%), Query Frame = 3
Query:   84 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            +F+EEQEALV+KSW ++KK++  + L+FFL+IFE+APSA ++FSFLR+S+VPLE+N KLK HAMSVFVMTCE+A QLRKAGKVTVR++TLK+LGA H KYGV + HFEV KF+LL+TIKE
Sbjct:   13 SFSEEQEALVLKSWAILKKDSANIALRFFLKIFEVAPSASQMFSFLRNSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRDTTLKRLGATHLKYGVGDAHFEVVKFALLDTIKE 132          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: HBL3_ORYSJ (Non-symbiotic hemoglobin 3 OS=Oryza sativa subsp. japonica GN=HB3 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.943e-43
Identity = 82/119 (68.91%), Postives = 105/119 (88.24%), Query Frame = 3
Query:   87 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            FTEEQEALV+KSW +MK ++  +G +FFL+IFE+APSA++LFSFLR+S+VPLE+N KLK HAM+VFVMTCE+A QLRK G+VTVR++T+K+LG+ HFK GV + HFEV KF+LLETIKE
Sbjct:   16 FTEEQEALVLKSWAIMKNDSAHIGHRFFLKIFEVAPSARQLFSFLRNSDVPLEKNPKLKIHAMAVFVMTCEAAAQLRKTGRVTVRDTTIKRLGSTHFKNGVSDAHFEVAKFALLETIKE 134          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: HBL4_ORYSJ (Non-symbiotic hemoglobin 4 OS=Oryza sativa subsp. japonica GN=HB4 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 7.249e-42
Identity = 79/119 (66.39%), Postives = 103/119 (86.55%), Query Frame = 3
Query:   87 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            FTEEQEALV+KSW +MK ++  +G +FFL+IFE+APSA+ LFSFLR+S+VPLE+N  LK HAM+VFVMTCE+A QLRK G+VTVR++T+K+LG+ HFK GV + HFEV +F+LLETIK+
Sbjct:   13 FTEEQEALVLKSWAIMKDDSANIGHRFFLKIFEVAPSARHLFSFLRNSDVPLEKNPNLKKHAMAVFVMTCEAAAQLRKTGRVTVRDTTIKRLGSTHFKNGVSDTHFEVARFALLETIKD 131          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: HBL2_ARATH (Non-symbiotic hemoglobin 2 OS=Arabidopsis thaliana GN=AHB2 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 8.882e-32
Identity = 66/119 (55.46%), Postives = 90/119 (75.63%), Query Frame = 3
Query:   87 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            FTE+QEALV +SW ++K++  +  L FF +I EIAP+A+ LFSFLRDS+     N KLK HA+ VF MTCE+A+QLR+ GKV V ++TL+ LG++H K GV++ HFEV K +LL T+KE
Sbjct:    6 FTEKQEALVKESWEILKQDIPKYSLHFFSQILEIAPAAKGLFSFLRDSDEVPHNNPKLKAHAVKVFKMTCETAIQLREEGKVVVADTTLQYLGSIHLKSGVIDPHFEVVKEALLRTLKE 124          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: HBL2_BRANA (Non-symbiotic hemoglobin 2 OS=Brassica napus GN=HB2 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.515e-31
Identity = 65/119 (54.62%), Postives = 91/119 (76.47%), Query Frame = 3
Query:   87 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            FTE+QEALV +SW ++K++  +  L FF +I EIAP+A+ +FSFLRD++     N KLK HA+ VF MTCE+A+QLR+ GKV V ++TL+ LG+VHFK GV++ HFEV K +L+ T+KE
Sbjct:    6 FTEKQEALVKESWEILKQDIPKYSLHFFSQILEIAPAAKDMFSFLRDTDEVPHNNPKLKAHAVKVFKMTCETAIQLREKGKVVVADTTLQYLGSVHFKSGVLDPHFEVVKEALVRTLKE 124          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: HBL2_SOLLC (Non-symbiotic hemoglobin 2 OS=Solanum lycopersicum GN=HB2 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.874e-30
Identity = 65/119 (54.62%), Postives = 87/119 (73.11%), Query Frame = 3
Query:   87 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            FT++QEALV  SW  MK++  +L L+FF  I EIAP A+ +FSFL+DS+   E N KL+ HA+ VF MTCESA+QLR+ G+V V E+TLK LG++H +  V + HFEV K +LL T+KE
Sbjct:    3 FTDKQEALVRDSWEFMKQDIPQLSLRFFSLILEIAPVAKNMFSFLKDSDELPENNPKLRAHAVKVFKMTCESAIQLREKGEVVVGETTLKYLGSIHLQKRVADPHFEVVKEALLRTVKE 121          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: HBL2_GOSHI (Non-symbiotic hemoglobin 2 OS=Gossypium hirsutum GN=HB2 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.874e-30
Identity = 66/119 (55.46%), Postives = 85/119 (71.43%), Query Frame = 3
Query:   87 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            FTE+QE LV +SW V+K++     L+FF  I EIAP A+ +FSFLR+S    + N KLK HA+ VF MTCESA+QLR+ G+V V ++TLK LG VH K GV + HFEV K +LL TI+E
Sbjct:    3 FTEKQEGLVKESWEVLKQDIPHSSLRFFSLILEIAPGAKNMFSFLRESEEIPQNNPKLKAHAVKVFKMTCESAIQLREKGEVVVADTTLKYLGTVHVKSGVKDPHFEVVKEALLRTIEE 121          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: HBL0_PHYPA (Non-symbiotic hemoglobin 0 OS=Physcomitrella patens GN=GLB0 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.269e-26
Identity = 55/120 (45.83%), Postives = 83/120 (69.17%), Query Frame = 3
Query:   81 RAFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIK 440
            + +++E E LV +SW ++KK+A   G+ FF ++FEIAP A+ ++SFLRDS +P E+N K+K HA  VF+MT ++AVQL + G   V ES L+KL A H   GV ++ FE+ K ++L  I+
Sbjct:   22 KTYSKENEQLVKQSWEILKKDAQRNGINFFRKVFEIAPGAKAMYSFLRDSTIPFEENPKVKNHARYVFMMTGDAAVQLGEKGAYQVLESKLQKLAATHVNAGVTDDQFEIVKEAILYAIE 141          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: HBPA_CASGL (Hemoglobin A OS=Casuarina glauca GN=SYMA PE=2 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 6.165e-25
Identity = 58/120 (48.33%), Postives = 78/120 (65.00%), Query Frame = 3
Query:   84 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            A TE QEAL+ +SW V+K+N     L+ F  I E AP ++ +FSFL+DSN   E N KLK HA  +F   CESA +LR+ G+     +TLK+LG++H K  + + HFEV K +LL TIKE
Sbjct:    2 ALTERQEALLKQSWEVLKQNIPGHSLRLFALIIEAAPESKYVFSFLKDSNEIPENNPKLKAHAAVIFKTICESATELRQKGQAVWDNNTLKRLGSIHLKNKITDPHFEVMKGALLGTIKE 121          
The following BLAST results are available for this feature:
BLAST of CX308539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HBL_HORVU1.411e-4572.27Non-symbiotic hemoglobin OS=Hordeum vulgare GN=HB ... [more]
HBL1_ORYSJ9.149e-4570.00Non-symbiotic hemoglobin 1 OS=Oryza sativa subsp. ... [more]
HBL3_ORYSJ2.943e-4368.91Non-symbiotic hemoglobin 3 OS=Oryza sativa subsp. ... [more]
HBL4_ORYSJ7.249e-4266.39Non-symbiotic hemoglobin 4 OS=Oryza sativa subsp. ... [more]
HBL2_ARATH8.882e-3255.46Non-symbiotic hemoglobin 2 OS=Arabidopsis thaliana... [more]
HBL2_BRANA1.515e-3154.62Non-symbiotic hemoglobin 2 OS=Brassica napus GN=HB... [more]
HBL2_SOLLC4.874e-3054.62Non-symbiotic hemoglobin 2 OS=Solanum lycopersicum... [more]
HBL2_GOSHI4.874e-3055.46Non-symbiotic hemoglobin 2 OS=Gossypium hirsutum G... [more]
HBL0_PHYPA4.269e-2645.83Non-symbiotic hemoglobin 0 OS=Physcomitrella paten... [more]
HBPA_CASGL6.165e-2548.33Hemoglobin A OS=Casuarina glauca GN=SYMA PE=2 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21001B02Rv AbsLeaSub1 Citrus clementina cDNA clone C21001B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308539 ID=CX308539; Name=CX308539; organism=Citrus clementina; type=EST; length=445bp
ACGGGATTCAACAACATTTTGTGTATCACATTCAATCCTCAGGTGTCCAA
AAGAAATCAATGGCCAACATTAACGAAGGTAGAGCCTTTACTGAAGAGCA
AGAAGCTTTAGTTGTCAAGTCATGGAATGTAATGAAGAAGAATGCTGGAG
AATTGGGTCTTAAATTCTTCTTGAGGATCTTTGAGATTGCACCATCAGCC
CAAAAGCTGTTCTCATTCTTGAGAGACTCAAATGTGCCTCTAGAGCAGAA
CCAGAAGCTCAAGCCCCACGCCATGTCTGTTTTTGTTATGACGTGTGAAT
CAGCAGTGCAACTGAGGAAAGCAGGCAAAGTGACAGTAAGAGAATCAACT
CTAAAAAAATTAGGAGCTGTCCACTTCAAATATGGTGTTGTTAATGAGCA
TTTTGAGGTCACAAAATTTTCACTACTGGAAACCATAAAAGAGGC
back to top