CX308539

Overview
NameCX308539
Unique NameCX308539
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length445
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: LGB4_PEA (Leghemoglobin Lb120-8 OS=Pisum sativum PE=2 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 2.964e-19
Identity = 54/119 (45.38%), Postives = 79/119 (66.39%), Query Frame = 3
Query:   87 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            FTE+QEALV  SW + K+N     + F+  I + AP+A+ +FSFL+DS   +  + KL+ HA  VF M  +SA+QLR +G+V + + TL   GA+H + GV++ HF V K +LL+TIKE
Sbjct:    3 FTEKQEALVNSSWELFKQNPS-YSVLFYTIILKKAPAAKGMFSFLKDS-AEVVDSPKLQAHAEKVFGMVHDSAIQLRASGEVVLGDVTL---GAIHIQKGVIDPHFVVVKEALLDTIKE 116          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: LGB2_PEA (Leghemoglobin Lb5-10 OS=Pisum sativum PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 6.602e-19
Identity = 53/119 (44.54%), Postives = 76/119 (63.87%), Query Frame = 3
Query:   87 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            FT++QEALV  SW   K+N     + F+  I E AP+A+ LFSFL+D+   +E + KL+ HA  VF +  +SA QLR  G+V +  +T   LGA+H + GV + HF V K +LL+TIK+
Sbjct:    3 FTDKQEALVNSSWESFKQNLSGNSILFYTIILEKAPAAKGLFSFLKDT-AGVEDSPKLQAHAEQVFGLVRDSAAQLRTKGEVVLGNAT---LGAIHVQRGVTDPHFVVVKEALLQTIKK 117          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: LGB3_VICFA (Leghemoglobin 49 OS=Vicia faba PE=2 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 1.921e-18
Identity = 53/119 (44.54%), Postives = 77/119 (64.71%), Query Frame = 3
Query:   87 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            FT++QEALV  SW   K+N     + F+  I E AP+A+ +FSFL+DS   +  + KL+ HA  VF M  +SA+QL+  G+V ++  +L   GA+H + GVV+ HF V K +LL+TIKE
Sbjct:    3 FTQQQEALVNSSWESFKQNPS-YSVLFYTIILEKAPAAKGMFSFLKDS-AGVVDSPKLQAHAEQVFGMVRDSAIQLQATGEVVLKNGSL---GAIHIQKGVVDPHFVVVKEALLKTIKE 116          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: LGB2_SESRO (Leghemoglobin 2 OS=Sesbania rostrata GN=GLB2 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 5.589e-18
Identity = 51/119 (42.86%), Postives = 76/119 (63.87%), Query Frame = 3
Query:   87 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            FTE+QEALV  S+   K+N     + F+  I E AP+A+ +FSFL+DS+   + N  L+ HA  VF +  +SA QLR  G V + +++   LG+VH + GV++ HF V K +LL+T+KE
Sbjct:    3 FTEKQEALVNASYEAFKQNLPGNSVLFYSFILEKAPAAKGMFSFLKDSDGVPQNNPSLQAHAEKVFGLVRDSAAQLRATGVVVLADAS---LGSVHVQKGVLDPHFVVVKEALLKTLKE 118          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: LGB1_LUPLU (Leghemoglobin-1 OS=Lupinus luteus PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 5.589e-18
Identity = 52/118 (44.07%), Postives = 73/118 (61.86%), Query Frame = 3
Query:   90 TEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            T+ Q ALV  S+     N  +   +FF  + EIAP A+ LFSFL+ S+   + N  L+ HA  VF +T E+A+QL+  G V   ++TLK LG+VH   GVV+ HF V K ++L+TIKE
Sbjct:    5 TDVQVALVKSSFEEFNANIPKNTHRFFTLVLEIAPGAKDLFSFLKGSSEVPQNNPDLQAHAGKVFKLTYEAAIQLQVNGAV-ASDATLKSLGSVHVSKGVVDAHFPVVKEAILKTIKE 121          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: LGB1_MEDTR (Leghemoglobin 1 OS=Medicago truncatula GN=LB1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 7.299e-18
Identity = 52/120 (43.33%), Postives = 77/120 (64.17%), Query Frame = 3
Query:   84 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            +FT++QEALV  S+   K+N     + F+  I E AP+A+ LFSFL+DS   ++ + +L+ HA  VF +  +SA QLR  G V + ++    LGA+H + GVV+ HF V K +LL+TIKE
Sbjct:    2 SFTDKQEALVNSSYEAFKQNLSGYSVFFYTVILEKAPAAKGLFSFLKDS-AGVQDSPQLQAHAEKVFGLVRDSASQLRATGGVVLGDAA---LGAIHIQKGVVDPHFVVVKEALLKTIKE 117          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: LGB_LOTJA (Leghemoglobin OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.124e-17
Identity = 50/119 (42.02%), Postives = 76/119 (63.87%), Query Frame = 3
Query:   87 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            FT +QEALV  S+   KKN     + F+  I EIAP+A+ +FSFL++S    + + +L+ HA  VF +T ++A QL   G+VT+ +++   LGAVH +  V + HF V K +LL+T+KE
Sbjct:    3 FTAQQEALVGSSYETFKKNLPTNSVLFYTVILEIAPTAKDMFSFLKESGP--KHSPQLQAHAEKVFALTRDAATQLVAKGEVTLADAS---LGAVHVQKAVTDPHFVVVKEALLQTVKE 116          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: LGB3_SESRO (Leghemoglobin 3 OS=Sesbania rostrata GN=GLB3 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 2.124e-17
Identity = 50/119 (42.02%), Postives = 75/119 (63.03%), Query Frame = 3
Query:   87 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            FTE+QEALV  S+   K+N     + F+  I E AP+A+ +FSFL+D +   + N  L+ HA  VF +  +SA QLR  G V + +++   LG+VH + GV++ HF V K +LL+T+KE
Sbjct:    3 FTEKQEALVNASYEAFKQNLPGNSVLFYSFILEKAPAAKGMFSFLKDFDEVPQNNPSLQAHAEKVFGLVRDSAAQLRATGVVVLADAS---LGSVHVQKGVLDPHFVVVKEALLKTLKE 118          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: LGBA_PHAVU (Leghemoglobin A OS=Phaseolus vulgaris PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 6.179e-17
Identity = 52/120 (43.33%), Postives = 71/120 (59.17%), Query Frame = 3
Query:   84 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            AFTE+QEALV  SW   K N  +  + F+  I E AP+A+ LFSFL +   P   N KL  HA S+F +  +SA QLR  G V    +    LG++H + GV N+ F V K +LL+T+K+
Sbjct:    3 AFTEKQEALVNSSWEAFKGNIPQYSVVFYTSILEKAPAAKNLFSFLANGVDP--TNPKLTAHAESLFGLVRDSAAQLRANGAVVADAA----LGSIHSQKGVSNDQFLVVKEALLKTLKQ 116          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: LGB1_VICFA (Leghemoglobin-1 OS=Vicia faba PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 8.070e-17
Identity = 52/119 (43.70%), Postives = 74/119 (62.18%), Query Frame = 3
Query:   87 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            FTE+QEALV  S  + K+N     + F+  I + AP+A+ +FSFL+DS   +  + KL  HA  VF M  +SAVQLR  G+V +      K G++H + GV++ HF V K +LL+TIKE
Sbjct:    3 FTEKQEALVNSSSQLFKQNPSNYSVLFYTIILQKAPTAKAMFSFLKDS-AGVVDSPKLGAHAEKVFGMVRDSAVQLRATGEVVLD----GKDGSIHIQKGVLDPHFVVVKEALLKTIKE 116          
The following BLAST results are available for this feature:
BLAST of CX308539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
LGB4_PEA2.964e-1945.38Leghemoglobin Lb120-8 OS=Pisum sativum PE=2 SV=3[more]
LGB2_PEA6.602e-1944.54Leghemoglobin Lb5-10 OS=Pisum sativum PE=2 SV=3[more]
LGB3_VICFA1.921e-1844.54Leghemoglobin 49 OS=Vicia faba PE=2 SV=3[more]
LGB2_SESRO5.589e-1842.86Leghemoglobin 2 OS=Sesbania rostrata GN=GLB2 PE=1 ... [more]
LGB1_LUPLU5.589e-1844.07Leghemoglobin-1 OS=Lupinus luteus PE=1 SV=3[more]
LGB1_MEDTR7.299e-1843.33Leghemoglobin 1 OS=Medicago truncatula GN=LB1 PE=2... [more]
LGB_LOTJA2.124e-1742.02Leghemoglobin OS=Lotus japonicus PE=2 SV=1[more]
LGB3_SESRO2.124e-1742.02Leghemoglobin 3 OS=Sesbania rostrata GN=GLB3 PE=2 ... [more]
LGBA_PHAVU6.179e-1743.33Leghemoglobin A OS=Phaseolus vulgaris PE=1 SV=2[more]
LGB1_VICFA8.070e-1743.70Leghemoglobin-1 OS=Vicia faba PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC21001B02Rv AbsLeaSub1 Citrus clementina cDNA clone C21001B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308539 ID=CX308539; Name=CX308539; organism=Citrus clementina; type=EST; length=445bp
ACGGGATTCAACAACATTTTGTGTATCACATTCAATCCTCAGGTGTCCAA
AAGAAATCAATGGCCAACATTAACGAAGGTAGAGCCTTTACTGAAGAGCA
AGAAGCTTTAGTTGTCAAGTCATGGAATGTAATGAAGAAGAATGCTGGAG
AATTGGGTCTTAAATTCTTCTTGAGGATCTTTGAGATTGCACCATCAGCC
CAAAAGCTGTTCTCATTCTTGAGAGACTCAAATGTGCCTCTAGAGCAGAA
CCAGAAGCTCAAGCCCCACGCCATGTCTGTTTTTGTTATGACGTGTGAAT
CAGCAGTGCAACTGAGGAAAGCAGGCAAAGTGACAGTAAGAGAATCAACT
CTAAAAAAATTAGGAGCTGTCCACTTCAAATATGGTGTTGTTAATGAGCA
TTTTGAGGTCACAAAATTTTCACTACTGGAAACCATAAAAGAGGC
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