CX308539

Overview
NameCX308539
Unique NameCX308539
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length445
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: LGB1_PEA (Leghemoglobin-1 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 8.070e-17
Identity = 52/119 (43.70%), Postives = 76/119 (63.87%), Query Frame = 3
Query:   87 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            FT++QEALV  S +  K+N     + F+  + E AP+A+ LFSFL+D+   +E + KL+ HA  VF +  +SA QLR  G+V +  +TL   GA+H + GV N HF V K +LL+TIK+
Sbjct:    3 FTDKQEALVNSS-SEFKQNLPGYSILFYTIVLEKAPAAKGLFSFLKDT-AGVEDSPKLQAHAEQVFGLVRDSAAQLRTKGEVVLGNATL---GAIHVQKGVTNPHFVVVKEALLQTIKK 116          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: LGB2_PHAVU (Leghemoglobin OS=Phaseolus vulgaris PE=2 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 2.596e-15
Identity = 50/120 (41.67%), Postives = 69/120 (57.50%), Query Frame = 3
Query:   84 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            AFTE+QEALV  SW   K N  +  + F+  I E AP+A+ LFSFL +   P   N KL  HA S+F +  +SA QLR  G V    +    LG++H +  + +  F V K +LL+T+KE
Sbjct:    3 AFTEKQEALVNSSWEAFKGNIPQYSVVFYTSILEKAPAAKNLFSFLANGVDP--TNPKLTAHAESLFGLVRDSAAQLRANGAVVADAA----LGSIHSQKALNDSQFLVVKEALLKTLKE 116          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: LGB2_VICFA (Leghemoglobin 29 OS=Vicia faba GN=LB29 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.870e-14
Identity = 49/120 (40.83%), Postives = 68/120 (56.67%), Query Frame = 3
Query:   87 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSN-VPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            FT  QEALV  SW    +N     + F+  I E AP A+ +FS L+D+N +PL  N  +  H   VF M  ++A QL+  G+V + ++T   LG VH +  V   HF V K +LL+TIKE
Sbjct:    3 FTLRQEALVNSSWEAFNQNLPLFSVLFYTFILEKAPIAKNMFSVLKDANEIPL-ANPSINAHTEMVFEMVRDAAAQLQTTGQVVLGDTT---LGVVHTQKRVDGLHFMVVKEALLKTIKE 118          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: LGB_PSOTE (Leghemoglobin OS=Psophocarpus tetragonolobus PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.395e-14
Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 3
Query:   87 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            FTE+QEALV  S+   K N  +  + F+  I E AP+A+ LF FL +   P   N KL  HA  +F +  +SA QLR  G V    +    LG++H + GV +  F V K +LL+T+KE
Sbjct:    4 FTEKQEALVNSSYEAFKANVPQYSVVFYTSILEKAPAAKDLFPFLANGVDP--TNPKLIGHAEKLFGLVHDSAAQLRAKGAVVADAA----LGSLHAQKGVTDPQFVVVKEALLKTVKE 116          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: LGB2_SOYBN (Leghemoglobin C2 OS=Glycine max PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 6.395e-14
Identity = 48/120 (40.00%), Postives = 68/120 (56.67%), Query Frame = 3
Query:   84 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            AFTE+QEALV  S+   K N  +  + F+  I E AP+A+ LFSFL +   P   N KL  HA  +F +  +SA QL+  G V    +    LG++H +  + +  F V K +LL+TIKE
Sbjct:    3 AFTEKQEALVSSSFEAFKANIPQYSVVFYTSILEKAPAAKDLFSFLSNGVDP--SNPKLTGHAEKLFGLVRDSAGQLKANGTVVADAA----LGSIHAQKAITDPQFVVVKEALLKTIKE 116          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: LGBA_SOYBN (Leghemoglobin A OS=Glycine max GN=LBA PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 8.352e-14
Identity = 48/119 (40.34%), Postives = 68/119 (57.14%), Query Frame = 3
Query:   84 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIK 440
            AFTE+Q+ALV  S+   K N  +  + F+  I E AP+A+ LFSFL +   P   N KL  HA  +F +  +SA QL+ +G V    +    LG+VH +  V +  F V K +LL+TIK
Sbjct:    3 AFTEKQDALVSSSFEAFKANIPQYSVVFYTSILEKAPAAKDLFSFLANGVDP--TNPKLTGHAEKLFALVRDSAGQLKASGTVVADAA----LGSVHAQKAVTDPQFVVVKEALLKTIK 115          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: LGB3_SOYBN (Leghemoglobin C3 OS=Glycine max GN=LGB1 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 8.352e-14
Identity = 47/120 (39.17%), Postives = 69/120 (57.50%), Query Frame = 3
Query:   84 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            AFT++QEALV  S+   K N  +  + F+  I E AP A+ LFSFL +   P   N KL  HA  +F +  +SA QL+ +G V +  +    LG++H +  + +  F V K +LL+TIKE
Sbjct:    3 AFTDKQEALVSSSFEAFKTNIPQYSVVFYTSILEKAPVAKDLFSFLANGVDP--TNPKLTGHAEKLFGLVRDSAGQLKASGTVVIDAA----LGSIHAQKAITDPQFVVVKEALLKTIKE 116          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: LGB1_SOYBN (Leghemoglobin C1 OS=Glycine max PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 5.413e-13
Identity = 48/120 (40.00%), Postives = 67/120 (55.83%), Query Frame = 3
Query:   84 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            AFTE+QEALV  S+   K N  +  + F+  I E AP+A+ LFSFL +   P   N KL  HA  +F +  +SA QL+  G V    +    L ++H +  V +  F V K +LL+TIKE
Sbjct:    3 AFTEKQEALVSSSFEAFKANIPQYSVVFYNSILEKAPAAKDLFSFLANGVDP--TNPKLTGHAEKLFALVRDSAGQLKTNGTVVADAA----LVSIHAQKAVTDPQFVVVKEALLKTIKE 116          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: LGB1_VIGUN (Leghemoglobin-1 OS=Vigna unguiculata GN=LBI PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.575e-12
Identity = 47/120 (39.17%), Postives = 69/120 (57.50%), Query Frame = 3
Query:   84 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            AF+++QEALV  ++   K N  +  + F+  I E AP+A+ LFSFL  +N     N KL  HA  +F +  +SA QLR +G V    +    LGAVH +  V +  F V K +L++T+KE
Sbjct:    3 AFSDKQEALVNGAYEAFKANIPKYSVVFYTTILEKAPAAKNLFSFL--ANGVDATNPKLTGHAEKLFGLVRDSAAQLRASGGVVADAA----LGAVHSQKAVNDAQFVVVKEALVKTLKE 116          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: LGB2_VIGUN (Leghemoglobin-2 OS=Vigna unguiculata GN=LBII PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.741e-11
Identity = 45/120 (37.50%), Postives = 68/120 (56.67%), Query Frame = 3
Query:   84 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            AF+++QE LV  ++   K +  +  + F+  I E AP+A+ LFSFL  +N     N KL  HA  +F +  +SA QLR +G V    +    LGAVH +  V +  F V K +L++T+KE
Sbjct:    3 AFSDKQEGLVNGAYEAFKADIPKYSVVFYTTILEKAPAAKNLFSFL--ANGVDATNPKLTGHAEKLFGLVRDSAAQLRASGGVVADAA----LGAVHSQKAVNDAQFVVVKEALVKTLKE 116          
The following BLAST results are available for this feature:
BLAST of CX308539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
LGB1_PEA8.070e-1743.70Leghemoglobin-1 OS=Pisum sativum PE=1 SV=2[more]
LGB2_PHAVU2.596e-1541.67Leghemoglobin OS=Phaseolus vulgaris PE=2 SV=3[more]
LGB2_VICFA2.870e-1440.83Leghemoglobin 29 OS=Vicia faba GN=LB29 PE=2 SV=1[more]
LGB_PSOTE6.395e-1440.34Leghemoglobin OS=Psophocarpus tetragonolobus PE=2 ... [more]
LGB2_SOYBN6.395e-1440.00Leghemoglobin C2 OS=Glycine max PE=1 SV=2[more]
LGBA_SOYBN8.352e-1440.34Leghemoglobin A OS=Glycine max GN=LBA PE=1 SV=2[more]
LGB3_SOYBN8.352e-1439.17Leghemoglobin C3 OS=Glycine max GN=LGB1 PE=2 SV=2[more]
LGB1_SOYBN5.413e-1340.00Leghemoglobin C1 OS=Glycine max PE=2 SV=2[more]
LGB1_VIGUN1.575e-1239.17Leghemoglobin-1 OS=Vigna unguiculata GN=LBI PE=2 S... [more]
LGB2_VIGUN1.741e-1137.50Leghemoglobin-2 OS=Vigna unguiculata GN=LBII PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionC21001B02Rv AbsLeaSub1 Citrus clementina cDNA clone C21001B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308539 ID=CX308539; Name=CX308539; organism=Citrus clementina; type=EST; length=445bp
ACGGGATTCAACAACATTTTGTGTATCACATTCAATCCTCAGGTGTCCAA
AAGAAATCAATGGCCAACATTAACGAAGGTAGAGCCTTTACTGAAGAGCA
AGAAGCTTTAGTTGTCAAGTCATGGAATGTAATGAAGAAGAATGCTGGAG
AATTGGGTCTTAAATTCTTCTTGAGGATCTTTGAGATTGCACCATCAGCC
CAAAAGCTGTTCTCATTCTTGAGAGACTCAAATGTGCCTCTAGAGCAGAA
CCAGAAGCTCAAGCCCCACGCCATGTCTGTTTTTGTTATGACGTGTGAAT
CAGCAGTGCAACTGAGGAAAGCAGGCAAAGTGACAGTAAGAGAATCAACT
CTAAAAAAATTAGGAGCTGTCCACTTCAAATATGGTGTTGTTAATGAGCA
TTTTGAGGTCACAAAATTTTCACTACTGGAAACCATAAAAGAGGC
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